* [gentoo-commits] proj/sci:master commit in: sci-biology/align_to_scf/
@ 2011-02-14 20:42 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2011-02-14 20:42 UTC (permalink / raw
To: gentoo-commits
commit: 85932e8e961c58e5db2250324427a77d498bff56
Author: Martin Mokrejs <mmokrejs <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 14 20:42:11 2011 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Feb 14 20:42:11 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=85932e8e
sci-biology/align_to_scf: fix sed trickery
(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit)
---
sci-biology/align_to_scf/align_to_scf-1.06.ebuild | 10 ++++++----
1 files changed, 6 insertions(+), 4 deletions(-)
diff --git a/sci-biology/align_to_scf/align_to_scf-1.06.ebuild b/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
index cb6cc78..f494140 100644
--- a/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
+++ b/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
@@ -4,6 +4,8 @@
EAPI=3
+inherit eutils
+
DESCRIPTION="Provide data to staden to view trace information at a given position missing from Roche .ace files"
HOMEPAGE="http://genome.imb-jena.de/software/roche454ace2caf"
SRC_URI="http://genome.imb-jena.de/software/roche454ace2caf/download/src/align_to_scf-1.06.tgz"
@@ -17,10 +19,10 @@ DEPEND=""
RDEPEND="${DEPEND}"
src_prepare(){
- sed -i 's:^CC :#CC :' Makefile
- sed -i 's:^LD :#LD :' Makefile
- sed -i 's:^CFLAGS.*:CFLAGS+= -D__LINUX__ -Wcast-align:' Makefile
- sed -i 's:^LDFLAGS=:#LDFLAGS=:' Makefile
+ sed -i "s:^CC :CC=$(tc-getCC) #:" Makefile || die "sed failed"
+ sed -i "s:^LD :LD=$(tc-getCC) #:" Makefile || die "sed failed"
+ sed -i 's:^CFLAGS.*:CFLAGS+= -D__LINUX__ -Wcast-align:' Makefile || die "sed failed"
+ sed -i 's:^LDFLAGS =:#LDFLAGS =:' Makefile || die "sed failed"
}
src_install(){
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/align_to_scf/
@ 2015-09-21 19:44 Justin Lecher
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2015-09-21 19:44 UTC (permalink / raw
To: gentoo-commits
commit: 1fef098316105722536e11c330c942d843d5bc35
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 19:42:04 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 19:42:04 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1fef0983
sci-biology/align_to_scf: Bump EAPI to 5
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/align_to_scf/align_to_scf-1.06.ebuild | 13 +++++--------
1 file changed, 5 insertions(+), 8 deletions(-)
diff --git a/sci-biology/align_to_scf/align_to_scf-1.06.ebuild b/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
index 68dad98..e9fb134 100644
--- a/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
+++ b/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
@@ -1,12 +1,12 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=3
+EAPI=5
inherit eutils
-DESCRIPTION="Provide data to staden to view trace information at a given position missing from Roche .ace files"
+DESCRIPTION="View trace information at a given position missing from Roche .ace files"
HOMEPAGE="http://genome.imb-jena.de/software/roche454ace2caf"
SRC_URI="http://genome.imb-jena.de/software/roche454ace2caf/download/src/align_to_scf-1.06.tgz"
@@ -15,9 +15,6 @@ SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
-DEPEND=""
-RDEPEND="${DEPEND}"
-
src_prepare(){
sed -i "s:^CC :CC=$(tc-getCC) #:" Makefile || die "sed failed"
sed -i "s:^LD :LD=$(tc-getCC) #:" Makefile || die "sed failed"
@@ -26,6 +23,6 @@ src_prepare(){
}
src_install(){
- dobin align_to_scf || die
- dodoc "${FILESDIR}"/README || die
+ dobin align_to_scf
+ dodoc "${FILESDIR}"/README
}
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/align_to_scf/
@ 2021-01-19 16:26 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-01-19 16:26 UTC (permalink / raw
To: gentoo-commits
commit: 5dedf2749c7dee0485dd2e1e058ca48f54dd809a
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 16:14:20 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 16:14:20 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5dedf274
sci-biology/align_to_scf: use PV in SRC_URI
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/align_to_scf/align_to_scf-1.06.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/align_to_scf/align_to_scf-1.06.ebuild b/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
index f9564900c..5a75d5224 100644
--- a/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
+++ b/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -7,7 +7,7 @@ inherit eutils
DESCRIPTION="View trace information at a given position missing from Roche .ace files"
HOMEPAGE="http://genome.imb-jena.de/software/roche454ace2caf"
-SRC_URI="http://genome.imb-jena.de/software/roche454ace2caf/download/src/align_to_scf-1.06.tgz"
+SRC_URI="http://genome.imb-jena.de/software/roche454ace2caf/download/src/align_to_scf-${PV}.tgz"
LICENSE="FLI-Jena"
SLOT="0"
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/align_to_scf/
@ 2021-03-05 21:44 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-03-05 21:44 UTC (permalink / raw
To: gentoo-commits
commit: 746e53c83ab8c2eb8bb2d5fe43dbf03b024cdd94
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Mar 5 21:27:27 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Mar 5 21:27:27 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=746e53c8
sci-biology/align_to_scf: EAPI bump, fix build
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/align_to_scf/align_to_scf-1.06.ebuild | 8 ++------
1 file changed, 2 insertions(+), 6 deletions(-)
diff --git a/sci-biology/align_to_scf/align_to_scf-1.06.ebuild b/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
index 5a75d5224..86ce20a83 100644
--- a/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
+++ b/sci-biology/align_to_scf/align_to_scf-1.06.ebuild
@@ -1,9 +1,7 @@
# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
-
-inherit eutils
+EAPI=7
DESCRIPTION="View trace information at a given position missing from Roche .ace files"
HOMEPAGE="http://genome.imb-jena.de/software/roche454ace2caf"
@@ -12,11 +10,9 @@ SRC_URI="http://genome.imb-jena.de/software/roche454ace2caf/download/src/align_t
LICENSE="FLI-Jena"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
src_prepare(){
- sed -i "s:^CC :CC=$(tc-getCC) #:" Makefile || die "sed failed"
- sed -i "s:^LD :LD=$(tc-getCC) #:" Makefile || die "sed failed"
+ default
sed -i 's:^CFLAGS.*:CFLAGS+= -D__LINUX__ -Wcast-align:' Makefile || die "sed failed"
sed -i 's:^LDFLAGS =:#LDFLAGS =:' Makefile || die "sed failed"
}
^ permalink raw reply related [flat|nested] 4+ messages in thread
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