From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 6B1021382C5 for ; Tue, 19 Jan 2021 13:21:02 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id B775AE0896; Tue, 19 Jan 2021 13:21:01 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 9C7FEE0896 for ; Tue, 19 Jan 2021 13:21:01 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id E1485340E02 for ; Tue, 19 Jan 2021 13:20:59 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 6045D309 for ; Tue, 19 Jan 2021 13:20:58 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1611062454.8cb5fae65ab7f750a2c573f6c7d742de567e7239.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: profiles/, sci-biology/graf-bin/ X-VCS-Repository: proj/sci X-VCS-Files: profiles/package.mask sci-biology/graf-bin/graf-bin-2.4.ebuild sci-biology/graf-bin/graf-bin-20171212.ebuild X-VCS-Directories: sci-biology/graf-bin/ profiles/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: 8cb5fae65ab7f750a2c573f6c7d742de567e7239 X-VCS-Branch: master Date: Tue, 19 Jan 2021 13:20:58 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: d5dcd9ad-d4eb-4026-a5e3-aa24508739ae X-Archives-Hash: 6779f0d4694fc985f99899d3574fcd11 commit: 8cb5fae65ab7f750a2c573f6c7d742de567e7239 Author: Andrew Ammerlaan riseup net> AuthorDate: Tue Jan 19 13:20:44 2021 +0000 Commit: Andrew Ammerlaan riseup net> CommitDate: Tue Jan 19 13:20:54 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8cb5fae6 sci-biology/graf-bin: fix fetch, fix install, EAPI bump Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> profiles/package.mask | 1 - ...raf-bin-20171212.ebuild => graf-bin-2.4.ebuild} | 22 ++++++++-------------- 2 files changed, 8 insertions(+), 15 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index db8b97d63..7b4aeba0c 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -67,4 +67,3 @@ sci-biology/generecon sci-biology/genomeview-bin sci-biology/gfftools sci-biology/glean -sci-biology/graf-bin diff --git a/sci-biology/graf-bin/graf-bin-20171212.ebuild b/sci-biology/graf-bin/graf-bin-2.4.ebuild similarity index 51% rename from sci-biology/graf-bin/graf-bin-20171212.ebuild rename to sci-biology/graf-bin/graf-bin-2.4.ebuild index 93d554892..8f73e8121 100644 --- a/sci-biology/graf-bin/graf-bin-20171212.ebuild +++ b/sci-biology/graf-bin/graf-bin-2.4.ebuild @@ -1,34 +1,28 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 inherit perl-module DESCRIPTION="Find closely related subjects using SNP genotype data, validate pedigree file" -HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/Software.cgi" -SRC_URI="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetZip.cgi?zip_name=GRAF_files.zip -> ${P}.tar.gz" -# the .zip is indeed .tar.gz +HOMEPAGE="https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/Software.cgi" +SRC_URI="https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetZip.cgi?zip_name=GRAF_files.zip -> ${P}.tar.gz" LICENSE="public-domain" SLOT="0" -KEYWORDS="~amd64" # 64bit exe only -IUSE="" - -DEPEND="" -RDEPEND="${DEPEND}" +KEYWORDS="~amd64" S="${WORKDIR}" src_prepare(){ + default sed -e 's#/usr/local/bin/perl#/usr/bin/env perl#' -i *.pl || die # there is not perl_fix_shebang } src_install(){ - dobin graf graf_dups *.pl - dodoc GRAF_ReadMe_*.docx GRAF-popDocumentation*.docx - insinto /usr/share/"${PN}" - doins *.txt *.bed *.bim *.fam + dobin graf graf_dups + perl_domodule *.pl } pkg_postinst(){