[gentoo-commits] proj/sci:master commit in: profiles/, sci-biology/mavid/

[gentoo-commits] proj/sci:master commit in: profiles/, sci-biology/mavid/

[Andrew Ammerlaan]

commit:     6f048647049efc2c0cb87f7aed4bc5fcc5ce5c1a
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 11:52:46 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 11:52:46 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6f048647

sci-biology/mavid: remove pack, retired by upstream in 2003

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 profiles/package.mask                |  1 -
 sci-biology/mavid/mavid-2.0.4.ebuild | 48 ------------------------------------
 sci-biology/mavid/metadata.xml       |  8 ------
 3 files changed, 57 deletions(-)

diff --git a/profiles/package.mask b/profiles/package.mask
index 58d0cd955..70da8bb30 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -81,4 +81,3 @@ sci-biology/lucy
 sci-biology/MagicViewer
 sci-biology/manatee-igs
 sci-biology/manatee-jcvi
-sci-biology/mavid

diff --git a/sci-biology/mavid/mavid-2.0.4.ebuild b/sci-biology/mavid/mavid-2.0.4.ebuild
deleted file mode 100644
index c75e28111..000000000
--- a/sci-biology/mavid/mavid-2.0.4.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit toolchain-funcs
-
-DESCRIPTION="Multiple alignment of large DNA sequences"
-HOMEPAGE="http://baboon.math.berkeley.edu/mavid/"
-SRC_URI="http://bio.math.berkeley.edu/mavid/download/mavid-package-${PV}.tar.gz"
-
-LICENSE="mavid"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND="
-	sci-biology/clustalw
-	sci-biology/fastdnaml"
-
-S="${WORKDIR}"/${PN}-package-${PV}
-
-src_prepare() {
-	sed \
-		-e 's:OPT_CPP_OPTIONS =:OPT_CPP_OPTIONS ?=:g' \
-		-e 's:DEBUG_CPP_OPTIONS =:DEBUG_CPP_OPTIONS ?=:g' \
-		-i $(find -type f -name Makefile) || die
-}
-
-src_compile() {
-	emake \
-		CPP=$(tc-getCXX) \
-		BASE_CPP_OPTIONS="${CXXFLAGS}" \
-		DEBUG_CPP_OPTIONS="${CXXFLAGS}" \
-		OPT_CPP_OPTIONS="${CXXFLAGS}"
-
-}
-
-src_install() {
-	local i
-	dobin mavid/{mavid,mavid.pl}
-	for i in checkfasta cut_alignment extract_seq extract_tree fasta2phylip phylip2fasta project_alignment randtree root_tree tree_dists; do
-		dobin utils/$i/$i
-	done
-	dodoc examples/*
-	newdoc mavid/README README.mavid
-}

diff --git a/sci-biology/mavid/metadata.xml b/sci-biology/mavid/metadata.xml
deleted file mode 100644
index 8417d1580..000000000
--- a/sci-biology/mavid/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>