* [gentoo-commits] proj/sci:master commit in: sci-biology/OBO-Edit/
@ 2011-06-25 17:22 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2011-06-25 17:22 UTC (permalink / raw
To: gentoo-commits
commit: b2813a169c91df4b8682f1df1b734ded21559810
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jun 25 14:43:17 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jun 25 14:43:17 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b2813a16
Cleaned ebuild
(Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-biology/OBO-Edit/ChangeLog | 7 +++++++
sci-biology/OBO-Edit/OBO-Edit-2.1_beta8.ebuild | 23 +++++++++++------------
2 files changed, 18 insertions(+), 12 deletions(-)
diff --git a/sci-biology/OBO-Edit/ChangeLog b/sci-biology/OBO-Edit/ChangeLog
new file mode 100644
index 0000000..e1de6ad
--- /dev/null
+++ b/sci-biology/OBO-Edit/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/OBO-Edit
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 25 Jun 2011; Justin Lecher <jlec@gentoo.org> OBO-Edit-2.1_beta8.ebuild:
+ Cleaned ebuild
+
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.1_beta8.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.1_beta8.ebuild
index debd89f..8842bcd 100644
--- a/sci-biology/OBO-Edit/OBO-Edit-2.1_beta8.ebuild
+++ b/sci-biology/OBO-Edit/OBO-Edit-2.1_beta8.ebuild
@@ -2,7 +2,9 @@
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=3
+EAPI=4
+
+inherit rpm
DESCRIPTION="Java-based editor optimized for the OBO biological ontology file format"
HOMEPAGE="http://www.oboedit.org/"
@@ -15,19 +17,16 @@ KEYWORDS="~amd64 ~x86"
IUSE=""
DEPEND="app-arch/rpm2targz"
-RDEPEND="${DEPEND}
- virtual/jre"
+RDEPEND="virtual/jre"
-src_unpack() {
- cd "${WORKDIR}"
- rpm2targz "${DISTDIR}/oboedit_2_1_8_linux_install4j.rpm" || die
- tar -xzf "${WORKDIR}/oboedit_2_1_8_linux_install4j.tar.gz" || die
-}
+S="${WORKDIR}"/opt
src_install(){
# sh "${DISTDIR}"/oboedit_2_1_8_unix_install4j.sh -q -overwrite --var-file="${FILESDIR}"/response.varfile --destination="${D}"/opt/OBO-Edit2
- mkdir -p "${D}"/opt/ || die
- cp -rp opt/OBO-Edit2 "${D}"/opt/ || die
- find "${D}"/opt -name firstrun | xargs rm -f # drop a world writable file
- find "${D}"/opt -name .svn | xargs rm -rf
+ find . -name firstrun -delete
+ find . -name .svn -exec rm -rf '{}' \;
+
+ insinto /opt/
+ doins -r OBO-Edit2
+ chmod 755 "${ED}"/opt/OBO-Edit2/*
}
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/OBO-Edit/
@ 2012-02-07 23:39 Martin Mokrejs
0 siblings, 0 replies; 9+ messages in thread
From: Martin Mokrejs @ 2012-02-07 23:39 UTC (permalink / raw
To: gentoo-commits
commit: 4460fed762ecb06de03d210fd5f166e8a3ee8589
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Feb 7 13:04:52 2012 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Feb 7 13:04:52 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4460fed7
sci-biology/OBO-Edit: more attempts to get rid of sandbox ACCESS VIOLATION SUMMARY errors
(Portage version: 2.1.10.45/git/Linux x86_64, unsigned Manifest commit)
---
sci-biology/OBO-Edit/ChangeLog | 5 +++++
sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild | 2 --
2 files changed, 5 insertions(+), 2 deletions(-)
diff --git a/sci-biology/OBO-Edit/ChangeLog b/sci-biology/OBO-Edit/ChangeLog
index 1378d6b..cc089b2 100644
--- a/sci-biology/OBO-Edit/ChangeLog
+++ b/sci-biology/OBO-Edit/ChangeLog
@@ -2,6 +2,11 @@
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ OBO-Edit-2.1.1.6.ebuild:
+ sci-biology/OBO-Edit: more attempts to get rid of sandbox ACCESS VIOLATION
+ SUMMARY errors
+
*OBO-Edit-2.1.1.6 (07 Feb 2012)
07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
index 30d6980..0cdb743 100644
--- a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
+++ b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
@@ -27,7 +27,6 @@ RDEPEND="virtual/jre"
S="${WORKDIR}"
src_prepare(){
- cd "${S}" || die
mkdir -p "${D}"/opt/OBO-Edit2/.install4j || die "Cannot pre-create "${D}"/opt/OBO-Edit2/.install4j/"
mkdir -p "${D}"/usr/bin
@@ -48,7 +47,6 @@ src_prepare(){
}
src_install(){
- cd "${S}" || die
cat "${TMPDIR}"/.install4j/response.varfile
chmod a-w "${TMPDIR}"/.install4j/response.varfile
INSTALL4J_KEEP_TEMP="yes" HOME="${TMPDIR}" "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh -q --varfile="${TMPDIR}"/.install4j/response.varfile --destination="${D}"/opt/OBO-Edit2 -dir "${D}"/opt/OBO-Edit2 || die "Failed to run the self-extracting "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh file"
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/OBO-Edit/
@ 2012-02-07 23:39 Martin Mokrejs
0 siblings, 0 replies; 9+ messages in thread
From: Martin Mokrejs @ 2012-02-07 23:39 UTC (permalink / raw
To: gentoo-commits
commit: 8035fabe16e943270b922958ab72b0c1bd40e0a3
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Feb 7 13:33:03 2012 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Feb 7 13:33:03 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8035fabe
added the addpredict() trick from tablet-bin*.ebuild to make the ACCESS DENIED messages quiet, bugs #402507 (learned from bug #387227)
(Portage version: 2.1.10.45/git/Linux x86_64, unsigned Manifest commit)
---
sci-biology/OBO-Edit/ChangeLog | 5 +++++
sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild | 12 +++++-------
2 files changed, 10 insertions(+), 7 deletions(-)
diff --git a/sci-biology/OBO-Edit/ChangeLog b/sci-biology/OBO-Edit/ChangeLog
index 79c451d..abf523e 100644
--- a/sci-biology/OBO-Edit/ChangeLog
+++ b/sci-biology/OBO-Edit/ChangeLog
@@ -4,6 +4,11 @@
07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
OBO-Edit-2.1.1.6.ebuild:
+ added the addpredict() trick from tablet-bin*.ebuild to make the ACCESS DENIED
+ messages quiet, bugs #402507 (learned from bug #387227)
+
+ 07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ OBO-Edit-2.1.1.6.ebuild:
added the addpredict() trick from tablet-bin*.ebuild to make the ACCESS
DENIED messages quiet, bugs #402507 (learned from bug #387227)
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
index 356f1bf..19c5de0 100644
--- a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
+++ b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
@@ -27,13 +27,11 @@ RDEPEND="virtual/jre"
S="${WORKDIR}"
pkg_setup() {
- einfo "Fixing java access violations ..."
- # learned from bug #387227
-
- # opened a bug #402507 to get this .systemPrefs directory pre-created for everybody
- addpredict /opt/icedtea-bin-7.2.0/jre/.systemPrefs
- addpredict /usr/local/bin/OBO-Edit
-
+ einfo "Fixing java access violations ..."
+ # learned from bug #387227
+ # opened a bug #402507 to get this .systemPrefs directory pre-created for everybody
+ addpredict /opt/icedtea-bin-7.2.0/jre/.systemPrefs
+ addpredict /usr/local/bin/OBO-Edit
}
src_prepare(){
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/OBO-Edit/
@ 2012-02-07 23:39 Martin Mokrejs
0 siblings, 0 replies; 9+ messages in thread
From: Martin Mokrejs @ 2012-02-07 23:39 UTC (permalink / raw
To: gentoo-commits
commit: f187f9d3b00a6837e8a279b268e19694b3dfc714
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Feb 7 14:00:43 2012 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Feb 7 14:00:43 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f187f9d3
adjust PATH to point to the installation place, few comment lines changes
(Portage version: 2.1.10.45/git/Linux x86_64, unsigned Manifest commit)
---
sci-biology/OBO-Edit/ChangeLog | 4 ++++
sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild | 11 ++++++++---
2 files changed, 12 insertions(+), 3 deletions(-)
diff --git a/sci-biology/OBO-Edit/ChangeLog b/sci-biology/OBO-Edit/ChangeLog
index abf523e..0632e05 100644
--- a/sci-biology/OBO-Edit/ChangeLog
+++ b/sci-biology/OBO-Edit/ChangeLog
@@ -4,6 +4,10 @@
07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
OBO-Edit-2.1.1.6.ebuild:
+ adjust PATH to point to the installation place, few comment lines changes
+
+ 07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ OBO-Edit-2.1.1.6.ebuild:
added the addpredict() trick from tablet-bin*.ebuild to make the ACCESS DENIED
messages quiet, bugs #402507 (learned from bug #387227)
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
index 19c5de0..ec0e64f 100644
--- a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
+++ b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
@@ -53,15 +53,20 @@ src_prepare(){
sed -e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${TMPDIR}" -Dinstall4j.jvmDir="${TMPDIR}" -Dsys.symlinkDir="${D}"usr/bin -Djava.util.prefs.systemRoot="${TMPDIR}"@" -i "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh || die "failed to set userHome and jvmDir where JAVA .systemPrefs can be found"
chmod u+rx "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh
- grep Duser "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh
}
src_install(){
- cat "${TMPDIR}"/.install4j/response.varfile
- chmod a-w "${TMPDIR}"/.install4j/response.varfile
+ # it looks install4j removes the target installation direcotry before writing into it :((
+ #
+ # cat "${TMPDIR}"/.install4j/response.varfile
+ # chmod a-w "${TMPDIR}"/.install4j/response.varfile
+
INSTALL4J_KEEP_TEMP="yes" HOME="${TMPDIR}" "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh -q --varfile="${TMPDIR}"/.install4j/response.varfile --destination="${D}"/opt/OBO-Edit2 -dir "${D}"/opt/OBO-Edit2 || die "Failed to run the self-extracting "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh file"
find . -name firstrun -delete
find . -name .svn -exec rm -rf '{}' \;
dodoc "${DISTDIR}"/"${PN}"_ReleaseNotes-"${PV}".txt
+
+ echo "PATH=/opt/OBO-Edit2" > 99OBO-Edit
+ doenvd 99OBO-Edit || die
}
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/OBO-Edit/
@ 2012-02-07 23:39 Martin Mokrejs
0 siblings, 0 replies; 9+ messages in thread
From: Martin Mokrejs @ 2012-02-07 23:39 UTC (permalink / raw
To: gentoo-commits
commit: 6c106f70850276424fe10db3a9d4acd3ddb2122e
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Feb 7 13:32:14 2012 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Feb 7 13:32:14 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6c106f70
added the addpredict() trick from tablet-bin*.ebuild to make the ACCESS DENIED messages quiet, bugs #402507 (learned from bug #387227)
(Portage version: 2.1.10.45/git/Linux x86_64, unsigned Manifest commit)
---
sci-biology/OBO-Edit/ChangeLog | 5 +++++
sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild | 14 +++++++++++++-
2 files changed, 18 insertions(+), 1 deletions(-)
diff --git a/sci-biology/OBO-Edit/ChangeLog b/sci-biology/OBO-Edit/ChangeLog
index cc089b2..79c451d 100644
--- a/sci-biology/OBO-Edit/ChangeLog
+++ b/sci-biology/OBO-Edit/ChangeLog
@@ -4,6 +4,11 @@
07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
OBO-Edit-2.1.1.6.ebuild:
+ added the addpredict() trick from tablet-bin*.ebuild to make the ACCESS
+ DENIED messages quiet, bugs #402507 (learned from bug #387227)
+
+ 07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ OBO-Edit-2.1.1.6.ebuild:
sci-biology/OBO-Edit: more attempts to get rid of sandbox ACCESS VIOLATION
SUMMARY errors
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
index 0cdb743..356f1bf 100644
--- a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
+++ b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
@@ -26,6 +26,16 @@ RDEPEND="virtual/jre"
S="${WORKDIR}"
+pkg_setup() {
+ einfo "Fixing java access violations ..."
+ # learned from bug #387227
+
+ # opened a bug #402507 to get this .systemPrefs directory pre-created for everybody
+ addpredict /opt/icedtea-bin-7.2.0/jre/.systemPrefs
+ addpredict /usr/local/bin/OBO-Edit
+
+}
+
src_prepare(){
mkdir -p "${D}"/opt/OBO-Edit2/.install4j || die "Cannot pre-create "${D}"/opt/OBO-Edit2/.install4j/"
mkdir -p "${D}"/usr/bin
@@ -40,7 +50,9 @@ src_prepare(){
# for user root install4j writes into /opt/icedtea-bin-7.2.0/jre/.systemPrefs or whatever it
# found via JAVA_HOME or similar variables
# for other users it writes into $HOME/.java/.userPrefs/
- sed -e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${TMPDIR}" -Dinstall4j.jvmDir="${TMPDIR}" -Dsys.symlinkDir="${D}"usr/bin@" -i "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh || die "failed to set userHome and jvmDir where JAVA .systemPrefs can be found"
+
+ # trick setting -Djava.util.prefs.systemRoot="${TMPDIR}" does not work
+ sed -e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${TMPDIR}" -Dinstall4j.jvmDir="${TMPDIR}" -Dsys.symlinkDir="${D}"usr/bin -Djava.util.prefs.systemRoot="${TMPDIR}"@" -i "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh || die "failed to set userHome and jvmDir where JAVA .systemPrefs can be found"
chmod u+rx "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh
grep Duser "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/OBO-Edit/
@ 2015-09-23 12:48 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2015-09-23 12:48 UTC (permalink / raw
To: gentoo-commits
commit: 02377db0d625e97d1e9b5d1320d36527f35e3993
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Sep 23 12:11:23 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Sep 23 12:11:23 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=02377db0
sci-biology/OBO-Edit: Bump to EAPI=5
Package-Manager: portage-2.2.21
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/OBO-Edit/OBO-Edit-2.1.0.ebuild | 13 +++++++------
sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild | 9 +++++----
2 files changed, 12 insertions(+), 10 deletions(-)
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.1.0.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.1.0.ebuild
index 504b76c..f5d9948 100644
--- a/sci-biology/OBO-Edit/OBO-Edit-2.1.0.ebuild
+++ b/sci-biology/OBO-Edit/OBO-Edit-2.1.0.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=4
+EAPI=5
inherit toolchain-funcs versionator java-pkg-2
@@ -10,8 +10,9 @@ MY_PV=$(replace_all_version_separators '-')
DESCRIPTION="Java-based editor optimized for the OBO biological ontology file format"
HOMEPAGE="http://www.oboedit.org/"
-SRC_URI="http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%20"${PV}"/"${MY_PV}"_unix_install4j.sh/download -> OBO-Edit_unix_install4j-"${PV}".sh
- http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%20"${PV}"/ReleaseNotes-"${PV}".txt"
+SRC_URI="
+ http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%20"${PV}"/"${MY_PV}"_unix_install4j.sh/download -> OBO-Edit_unix_install4j-"${PV}".sh
+ http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%20"${PV}"/ReleaseNotes-"${PV}".txt"
LICENSE="OBO-Edit" # Artistic-like
SLOT="0"
@@ -29,8 +30,8 @@ src_install(){
sed "s#/bin/java\" -Dinstall4j.jvmDir#/bin/java\" -Duser.home="${D}"/../temp -Dinstall4j.jvmDir#" -i "${DISTDIR}"/OBO-Edit_unix_install4j-"${PV}".sh || die "failed to set userHome value"
sh "${DISTDIR}"/OBO-Edit_unix_install4j-"${PV}".sh -q -overwrite --varfile="${D}"/opt/OBO-Edit2/.install4j/response.varfile --destination="${D}"/opt/OBO-Edit2 -dir "${D}"/opt/OBO-Edit2 || die "Failed to run the self-extracting "${DISTDIR}"/OBO-Edit_unix_install4j-"${PV}".sh file"
- find . -name firstrun -delete
- find . -name .svn -exec rm -rf '{}' \;
+ find . -name firstrun -delete || die
+ find . -name .svn -exec rm -rf '{}' \; || die
insinto /opt/
doins -r OBO-Edit2
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
index 2c0ac7b..0a3ca5d 100644
--- a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
+++ b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=4
+EAPI=5
inherit toolchain-funcs versionator java-pkg-2
@@ -13,8 +13,9 @@ MY_PV=$(replace_all_version_separators '-')
DESCRIPTION="Java-based editor optimized for the OBO biological ontology file format"
HOMEPAGE="http://www.oboedit.org/"
-SRC_URI="http://downloads.sourceforge.net/project/geneontology/OBO-Edit%202%20%5BLatest%20versions%5D/"${MY_VER}"/"${MY_PV}"_unix_install4j.sh -> "${PN}"_unix_install4j-"${PV}".sh
- http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/"${MY_PV}"/ReleaseNotes-"${MY_VER}".txt -> "${PN}"_ReleaseNotes-"${PV}".txt"
+SRC_URI="
+ http://downloads.sourceforge.net/project/geneontology/OBO-Edit%202%20%5BLatest%20versions%5D/"${MY_VER}"/"${MY_PV}"_unix_install4j.sh -> "${PN}"_unix_install4j-"${PV}".sh
+ http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/"${MY_PV}"/ReleaseNotes-"${MY_VER}".txt -> "${PN}"_ReleaseNotes-"${PV}".txt"
LICENSE="OBO-Edit" # Artistic-like
SLOT="0"
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/OBO-Edit/
@ 2016-01-25 8:47 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2016-01-25 8:47 UTC (permalink / raw
To: gentoo-commits
commit: fd1926f50b2555db3d637c377223551e3415adf9
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jan 22 19:17:51 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jan 22 19:18:41 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=fd1926f5
sci-biology/OBO-Edit: Use ecvs_clean to clean workdir
* add missing die
* Fix quoting
Package-Manager: portage-2.2.27
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/OBO-Edit/OBO-Edit-2.1.0.ebuild | 35 +++++++++++++++--------
sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild | 42 +++++++++++++++++-----------
sci-biology/OBO-Edit/metadata.xml | 2 +-
3 files changed, 51 insertions(+), 28 deletions(-)
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.1.0.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.1.0.ebuild
index f5d9948..c1b900a 100644
--- a/sci-biology/OBO-Edit/OBO-Edit-2.1.0.ebuild
+++ b/sci-biology/OBO-Edit/OBO-Edit-2.1.0.ebuild
@@ -1,18 +1,18 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
-inherit toolchain-funcs versionator java-pkg-2
+inherit eutils toolchain-funcs versionator java-pkg-2
MY_PV=$(replace_all_version_separators '-')
DESCRIPTION="Java-based editor optimized for the OBO biological ontology file format"
HOMEPAGE="http://www.oboedit.org/"
SRC_URI="
- http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%20"${PV}"/"${MY_PV}"_unix_install4j.sh/download -> OBO-Edit_unix_install4j-"${PV}".sh
- http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%20"${PV}"/ReleaseNotes-"${PV}".txt"
+ http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%20${PV}/${MY_PV}_unix_install4j.sh/download -> OBO-Edit_unix_install4j-${PV}.sh
+ http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%20${PV}/ReleaseNotes-${PV}.txt"
LICENSE="OBO-Edit" # Artistic-like
SLOT="0"
@@ -25,17 +25,30 @@ RDEPEND="virtual/jre"
S="${WORKDIR}"
src_install(){
- mkdir -p "${D}"/opt/OBO-Edit2/.install4j || die "Cannot pre-create "${D}"/opt/OBO-Edit2/.install4j/"
- sed "s#\"\${D}\"#"${D}"#g" "${FILESDIR}"/response.varfile > "${D}"/opt/OBO-Edit2/.install4j/response.varfile || die "sed failed"
- sed "s#/bin/java\" -Dinstall4j.jvmDir#/bin/java\" -Duser.home="${D}"/../temp -Dinstall4j.jvmDir#" -i "${DISTDIR}"/OBO-Edit_unix_install4j-"${PV}".sh || die "failed to set userHome value"
-
- sh "${DISTDIR}"/OBO-Edit_unix_install4j-"${PV}".sh -q -overwrite --varfile="${D}"/opt/OBO-Edit2/.install4j/response.varfile --destination="${D}"/opt/OBO-Edit2 -dir "${D}"/opt/OBO-Edit2 || die "Failed to run the self-extracting "${DISTDIR}"/OBO-Edit_unix_install4j-"${PV}".sh file"
+ dodir /opt/OBO-Edit2/.install4j
+
+ sed \
+ -e "s#\"\${D}\"#"${D}"#g" \
+ "${FILESDIR}"/response.varfile \
+ > "${D}"/opt/OBO-Edit2/.install4j/response.varfile || die "sed failed"
+
+ sed \
+ -e "s#/bin/java\" -Dinstall4j.jvmDir#/bin/java\" -Duser.home="${D}"/../temp -Dinstall4j.jvmDir#" \
+ -i "${DISTDIR}"/OBO-Edit_unix_install4j-"${PV}".sh || die "failed to set userHome value"
+
+ sh "${DISTDIR}"/OBO-Edit_unix_install4j-"${PV}".sh \
+ -q -overwrite \
+ --varfile="${D}"/opt/OBO-Edit2/.install4j/response.varfile \
+ --destination="${D}"/opt/OBO-Edit2 \
+ -dir "${D}"/opt/OBO-Edit2 \
+ || die "Failed to run the self-extracting ${DISTDIR}/OBO-Edit_unix_install4j-"${PV}".sh file"
find . -name firstrun -delete || die
- find . -name .svn -exec rm -rf '{}' \; || die
+
+ esvn_clean
insinto /opt/
doins -r OBO-Edit2
- chmod 755 "${ED}"/opt/OBO-Edit2/*
+ chmod 755 "${ED}"/opt/OBO-Edit2/* || die
dodoc "${DISTDIR}"/ReleaseNotes-2.1.0.txt
}
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
index 0a3ca5d..4aa6496 100644
--- a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
+++ b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
-inherit toolchain-funcs versionator java-pkg-2
+inherit eutils toolchain-funcs versionator java-pkg-2
# MY_PV=$(replace_all_version_separators '-')
MY_PV="oboedit_2_1_1-b6"
@@ -14,8 +14,8 @@ MY_PV=$(replace_all_version_separators '-')
DESCRIPTION="Java-based editor optimized for the OBO biological ontology file format"
HOMEPAGE="http://www.oboedit.org/"
SRC_URI="
- http://downloads.sourceforge.net/project/geneontology/OBO-Edit%202%20%5BLatest%20versions%5D/"${MY_VER}"/"${MY_PV}"_unix_install4j.sh -> "${PN}"_unix_install4j-"${PV}".sh
- http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/"${MY_PV}"/ReleaseNotes-"${MY_VER}".txt -> "${PN}"_ReleaseNotes-"${PV}".txt"
+ http://downloads.sourceforge.net/project/geneontology/OBO-Edit%202%20%5BLatest%20versions%5D/${MY_VER}/${MY_PV}_unix_install4j.sh -> ${PN}_unix_install4j-${PV}.sh
+ http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/${MY_PV}/ReleaseNotes-${MY_VER}.txt -> ${PN}_ReleaseNotes-${PV}.txt"
LICENSE="OBO-Edit" # Artistic-like
SLOT="0"
@@ -36,24 +36,26 @@ pkg_setup() {
}
src_prepare(){
- mkdir -p "${D}"/opt/OBO-Edit2/.install4j || die "Cannot pre-create "${D}"/opt/OBO-Edit2/.install4j/"
- mkdir -p "${D}"/usr/bin
+ dodir /opt/OBO-Edit2/.install4j /usr/bin
# /var/tmp/portage/sci-biology/OBO-Edit-2.1.1.6/image//opt/OBO-Edit2/.install4j/response.varfile
sed -e "s#\"\${D}\"#"${D}"#g" "${FILESDIR}"/response.varfile | \
sed -e "s#\"\${TMPDIR}\"#"${TMPDIR}"#g" | \
- sed -e "s@sys.symlinkDir=/usr/local/bin@#sys.symlinkDir=/usr/local/bin@" > \
- "${D}"/opt/OBO-Edit2/.install4j/response.varfile || die "sed failed"
- cp -r "${D}"/opt/OBO-Edit2/.install4j "${TMPDIR}"
+ sed -e "s@sys.symlinkDir=/usr/local/bin@#sys.symlinkDir=/usr/local/bin@" \
+ > "${D}"/opt/OBO-Edit2/.install4j/response.varfile || die "sed failed"
+ cp -r "${D}"/opt/OBO-Edit2/.install4j "${TMPDIR}" || die
# for user root install4j writes into /opt/icedtea-bin-7.2.0/jre/.systemPrefs or whatever it
# found via JAVA_HOME or similar variables
# for other users it writes into $HOME/.java/.userPrefs/
# trick setting -Djava.util.prefs.systemRoot="${TMPDIR}" does not work
- sed -e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${TMPDIR}" -Dinstall4j.jvmDir="${TMPDIR}" -Dsys.symlinkDir="${D}"usr/bin -Djava.util.prefs.systemRoot="${TMPDIR}"@" -i "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh || die "failed to set userHome and jvmDir where JAVA .systemPrefs can be found"
+ sed \
+ -e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${TMPDIR}" -Dinstall4j.jvmDir="${TMPDIR}" -Dsys.symlinkDir="${D}"usr/bin -Djava.util.prefs.systemRoot="${TMPDIR}"@" \
+ -i "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh \
+ || die "failed to set userHome and jvmDir where JAVA .systemPrefs can be found"
- chmod u+rx "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh
+ chmod u+rx "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh || die
}
src_install(){
@@ -62,12 +64,20 @@ src_install(){
# cat "${TMPDIR}"/.install4j/response.varfile
# chmod a-w "${TMPDIR}"/.install4j/response.varfile
- INSTALL4J_KEEP_TEMP="yes" HOME="${TMPDIR}" "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh -q --varfile="${TMPDIR}"/.install4j/response.varfile --destination="${D}"/opt/OBO-Edit2 -dir "${D}"/opt/OBO-Edit2 || die "Failed to run the self-extracting "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh file"
- find . -name firstrun -delete
- find . -name .svn -exec rm -rf '{}' \;
+ INSTALL4J_KEEP_TEMP="yes" \
+ HOME="${TMPDIR}" \
+ sh "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh -q \
+ --varfile="${TMPDIR}"/.install4j/response.varfile \
+ --destination="${D}"/opt/OBO-Edit2 \
+ -dir "${D}"/opt/OBO-Edit2 \
+ || die "Failed to run the self-extracting ${DISTDIR}/${PN}_unix_install4j-${PV}.sh file"
+
+ find . -name firstrun -delete || die
+
+ esvn_clean
dodoc "${DISTDIR}"/"${PN}"_ReleaseNotes-"${PV}".txt
- echo "PATH=/opt/OBO-Edit2" > 99OBO-Edit
- doenvd 99OBO-Edit || die
+ echo "PATH=/opt/OBO-Edit2" > 99OBO-Edit || die
+ doenvd 99OBO-Edit
}
diff --git a/sci-biology/OBO-Edit/metadata.xml b/sci-biology/OBO-Edit/metadata.xml
index c0878bc..51e9384 100644
--- a/sci-biology/OBO-Edit/metadata.xml
+++ b/sci-biology/OBO-Edit/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version='1.0' encoding='UTF-8'?>
+<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/OBO-Edit/
@ 2021-01-19 10:49 Andrew Ammerlaan
0 siblings, 0 replies; 9+ messages in thread
From: Andrew Ammerlaan @ 2021-01-19 10:49 UTC (permalink / raw
To: gentoo-commits
commit: 23642c854860b7c0ba17a2304c25c3862594dfae
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 10:49:35 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 10:49:35 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=23642c85
sci-biology/OBO-Edit: add missing slash
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild
index 29550a0fc..d4d09a644 100644
--- a/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild
+++ b/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild
@@ -46,7 +46,7 @@ src_prepare(){
# trick setting -Djava.util.prefs.systemRoot="${TMPDIR}" does not work
sed \
- -e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${HOME}" -Dinstall4j.jvmDir="${HOME}" -Dsys.symlinkDir="${D}"usr/bin -Djava.util.prefs.systemRoot="${HOME}"@" \
+ -e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${HOME}" -Dinstall4j.jvmDir="${HOME}" -Dsys.symlinkDir=${D}/usr/bin -Djava.util.prefs.systemRoot="${HOME}"@" \
-i "${WORKDIR}"/"${PN}"_unix_install4j-"${PV}".sh \
|| die "failed to set userHome and jvmDir where JAVA .systemPrefs can be found"
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/OBO-Edit/
@ 2021-01-19 11:26 Andrew Ammerlaan
0 siblings, 0 replies; 9+ messages in thread
From: Andrew Ammerlaan @ 2021-01-19 11:26 UTC (permalink / raw
To: gentoo-commits
commit: d715e025c5c353fbe8c3cb186194357198ac1ac8
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 11:26:17 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 11:26:17 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d715e025
sci-biology/OBO-Edit: quote unqouted variable
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild
index d4d09a644..3af0ec3b3 100644
--- a/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild
+++ b/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild
@@ -46,7 +46,7 @@ src_prepare(){
# trick setting -Djava.util.prefs.systemRoot="${TMPDIR}" does not work
sed \
- -e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${HOME}" -Dinstall4j.jvmDir="${HOME}" -Dsys.symlinkDir=${D}/usr/bin -Djava.util.prefs.systemRoot="${HOME}"@" \
+ -e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${HOME}" -Dinstall4j.jvmDir="${HOME}" -Dsys.symlinkDir="${D}"/usr/bin -Djava.util.prefs.systemRoot="${HOME}"@" \
-i "${WORKDIR}"/"${PN}"_unix_install4j-"${PV}".sh \
|| die "failed to set userHome and jvmDir where JAVA .systemPrefs can be found"
^ permalink raw reply related [flat|nested] 9+ messages in thread
end of thread, other threads:[~2021-01-19 11:26 UTC | newest]
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2021-01-19 10:49 Andrew Ammerlaan
2016-01-25 8:47 Justin Lecher
2015-09-23 12:48 Justin Lecher
2012-02-07 23:39 Martin Mokrejs
2012-02-07 23:39 Martin Mokrejs
2012-02-07 23:39 Martin Mokrejs
2012-02-07 23:39 Martin Mokrejs
2011-06-25 17:22 Justin Lecher
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