From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id D09271382C5 for ; Mon, 18 Jan 2021 21:39:13 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id E7668E0817; Mon, 18 Jan 2021 21:39:12 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id CA6FCE0817 for ; Mon, 18 Jan 2021 21:39:12 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 902A3340EA4 for ; Mon, 18 Jan 2021 21:39:11 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id CC6D53A6 for ; Mon, 18 Jan 2021 21:39:09 +0000 (UTC) From: "Aisha Tammy" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Aisha Tammy" Message-ID: <1611005924.d08f55efd3ed478e2ebf4a68bc83ee36e875c33c.epsilon-0@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/pvmsx/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/pvmsx/metadata.xml sci-biology/pvmsx/pvmsx-0.1.ebuild X-VCS-Directories: sci-biology/pvmsx/ X-VCS-Committer: epsilon-0 X-VCS-Committer-Name: Aisha Tammy X-VCS-Revision: d08f55efd3ed478e2ebf4a68bc83ee36e875c33c X-VCS-Branch: master Date: Mon, 18 Jan 2021 21:39:09 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 7fa71945-b2bf-4cc5-a183-5e8629f3b5a7 X-Archives-Hash: 497c609dc070929cd4d89de58b510797 commit: d08f55efd3ed478e2ebf4a68bc83ee36e875c33c Author: Aisha Tammy aisha cc> AuthorDate: Mon Jan 18 21:38:14 2021 +0000 Commit: Aisha Tammy aisha cc> CommitDate: Mon Jan 18 21:38:44 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d08f55ef sci-biology/pvmsx: drop dead package upstream has not updated in 14 years Closes: https://bugs.gentoo.org/755830 Signed-off-by: Aisha Tammy aisha.cc> sci-biology/pvmsx/metadata.xml | 12 ----------- sci-biology/pvmsx/pvmsx-0.1.ebuild | 43 -------------------------------------- 2 files changed, 55 deletions(-) diff --git a/sci-biology/pvmsx/metadata.xml b/sci-biology/pvmsx/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/pvmsx/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ - - - - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - - sci-biology@gentoo.org - Gentoo Biology Project - - diff --git a/sci-biology/pvmsx/pvmsx-0.1.ebuild b/sci-biology/pvmsx/pvmsx-0.1.ebuild deleted file mode 100644 index b88863a45..000000000 --- a/sci-biology/pvmsx/pvmsx-0.1.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Parallel multi-FASTA file processing tool" -HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/" -SRC_URI=" - ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/${PN}.tar.gz - ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/cdbfasta.tar.gz" - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -#DEPEND="sys-cluster/pvm" -#RDEPEND="${DEPEND}" - -S=${WORKDIR} - -src_prepare() { - # we need gclib from cdbfasta.tar.gz bundle which has fewer files than tgi_cpp_library.tar.gz wbut has e.g. GStr.h - sed \ - -e 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' \ - -i "${S}"/Makefile || die "Failed to run sed" - sed \ - -e 's#GCLDIR := ../gclib#GCLDIR := ../cdbfasta/gclib#' \ - -i "${S}"/Makefile || die - sed \ - -e "s#-I-#-iquote#" \ - -i "${S}"/Makefile || die - ln -s ../cdbfasta/gcl . || die "Cannot make a softlink" -} - -src_compile() { - default -} - -src_install() { - dobin ${PN} - newdoc README README.${PN} -}