[gentoo-commits] proj/sci:master commit in: sci-biology/subread/, profiles/

[gentoo-commits] proj/sci:master commit in: sci-biology/subread/, profiles/

[Andrew Ammerlaan]

commit:     333ecd2b5e8b4e4c92634af94ac075e59299dd53
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Jan 18 15:16:35 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Mon Jan 18 15:16:44 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=333ecd2b

sci-biology/subread: version bump 2.0.1, fix fetch

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 profiles/package.mask                                     |  1 -
 .../{subread-1.4.6.ebuild => subread-2.0.1.ebuild}        | 15 +++++++--------
 2 files changed, 7 insertions(+), 9 deletions(-)

diff --git a/profiles/package.mask b/profiles/package.mask
index f727ddc7a..6938af860 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -107,4 +107,3 @@ sci-biology/snphylo
 sci-biology/SPAdes
 sci-biology/sra_sdk
 sci-biology/staden_doc
-sci-biology/subread

diff --git a/sci-biology/subread/subread-1.4.6.ebuild b/sci-biology/subread/subread-2.0.1.ebuild
similarity index 75%
rename from sci-biology/subread/subread-1.4.6.ebuild
rename to sci-biology/subread/subread-2.0.1.ebuild
index aa8290e1a..18f11e5a6 100644
--- a/sci-biology/subread/subread-1.4.6.ebuild
+++ b/sci-biology/subread/subread-2.0.1.ebuild
@@ -1,23 +1,21 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
-
-[ "$PV" == "9999" ] && inherit subversion
+EAPI=7
 
 DESCRIPTION="NGS suite for analysis of mapped reads, summary of exon/intron/gene counts"
 HOMEPAGE="http://bioinf.wehi.edu.au/featureCounts/" # no https
 if [ "$PV" == "9999" ]; then
+	inherit subversion
 	ESVN_REPO_URI="https://subread.svn.sourceforge.net/svnroot/subread/trunk"
-	#KEYWORDS="~amd64 ~x86"
+	KEYWORDS=""
 else
-	SRC_URI="https://sourceforge.net/projects/subread/files/"${P}"/"${P}"-source.tar.gz"
-	KEYWORDS="~amd64 ~x86"
+	SRC_URI="https://sourceforge.net/projects/subread/files/${P}/${P}-source.tar.gz"
+	KEYWORDS=""
 fi
 
 LICENSE="GPL-3"
 SLOT="0"
-IUSE=""
 
 DEPEND="sys-libs/zlib"
 RDEPEND="${DEPEND}"
@@ -25,6 +23,7 @@ RDEPEND="${DEPEND}"
 S="${S}"-source
 
 src_prepare(){
+	default
 	sed -e "s/-mtune=core2//g" -e "s/-O9//g" -i src/Makefile.Linux || die
 }