From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id D52751382C5 for ; Mon, 18 Jan 2021 13:19:57 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id E0CD7E0802; Mon, 18 Jan 2021 13:19:56 +0000 (UTC) Received: from smtp.gentoo.org (dev.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id C5C58E0802 for ; Mon, 18 Jan 2021 13:19:56 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id CC177340C96 for ; Mon, 18 Jan 2021 13:19:55 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 54C793A6 for ; Mon, 18 Jan 2021 13:19:54 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1610975967.aefef87be970eed9b57309b22c2cae0787e1bccc.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/trim_galore/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/trim_galore/trim_galore-0.4.0.ebuild sci-biology/trim_galore/trim_galore-0.6.6.ebuild X-VCS-Directories: sci-biology/trim_galore/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: aefef87be970eed9b57309b22c2cae0787e1bccc X-VCS-Branch: master Date: Mon, 18 Jan 2021 13:19:54 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 713856a6-997c-4736-9ad0-e1be66154277 X-Archives-Hash: e7086d43dbb37c60393e8330233296cd commit: aefef87be970eed9b57309b22c2cae0787e1bccc Author: Andrew Ammerlaan riseup net> AuthorDate: Mon Jan 18 13:19:27 2021 +0000 Commit: Andrew Ammerlaan riseup net> CommitDate: Mon Jan 18 13:19:27 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=aefef87b sci-biology/trim_galore: version bump 0.6.6, fix fetching Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-biology/trim_galore/trim_galore-0.4.0.ebuild | 26 ------------------------ sci-biology/trim_galore/trim_galore-0.6.6.ebuild | 26 ++++++++++++++++++++++++ 2 files changed, 26 insertions(+), 26 deletions(-) diff --git a/sci-biology/trim_galore/trim_galore-0.4.0.ebuild b/sci-biology/trim_galore/trim_galore-0.4.0.ebuild deleted file mode 100644 index 2ef6d591e..000000000 --- a/sci-biology/trim_galore/trim_galore-0.4.0.ebuild +++ /dev/null @@ -1,26 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Perl wrapper around Cutadapt and FastQC to adapter and quality trimming" -HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/trim_galore" -SRC_URI="http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/trim_galore_v${PV}.zip" -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND="" -RDEPEND=" - dev-lang/perl - sci-biology/cutadapt - sci-biology/fastqc - ${DEPEND}" - -S="${WORKDIR}" - -src_install(){ - dobin trim_galore - dodoc *.pdf -} diff --git a/sci-biology/trim_galore/trim_galore-0.6.6.ebuild b/sci-biology/trim_galore/trim_galore-0.6.6.ebuild new file mode 100644 index 000000000..c99dcfcc6 --- /dev/null +++ b/sci-biology/trim_galore/trim_galore-0.6.6.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Perl wrapper around Cutadapt and FastQC to adapter and quality trimming" +HOMEPAGE="https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ https://github.com/FelixKrueger/TrimGalore" +SRC_URI="https://github.com/FelixKrueger/TrimGalore/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" + +DEPEND="" +RDEPEND=" + dev-lang/perl + sci-biology/cutadapt + sci-biology/fastqc + ${DEPEND}" + +S="${WORKDIR}/TrimGalore-${PV}" + +src_install(){ + dobin trim_galore + dodoc -r Docs +}