[gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/

["Andrew Ammerlaan" <andrewammerlaan@riseup.net>]

commit:     ef081ac76fedf3af034da77298fcc1b541e2c5ec
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Jan 18 11:33:07 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Mon Jan 18 11:33:07 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ef081ac7

sci-chemistry/talosn: fix fetch

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 .../talosn/talosn-4.01.2013.148.15.55-r3.ebuild    | 67 ----------------------
 .../talosn/talosn-4.12.2015.147.15.40.ebuild       |  9 +--
 2 files changed, 5 insertions(+), 71 deletions(-)

diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
deleted file mode 100644
index d308ded66..000000000
--- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit java-pkg-opt-2
-
-DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts"
-HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
-SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
-
-SLOT="0"
-LICENSE="all-rights-reserved"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-DEPEND=">=virtual/jre-1.5:*"
-RDEPEND="${DEPEND}
-	app-shells/tcsh
-	sci-biology/ncbi-tools"
-
-S="${WORKDIR}"
-
-QA_PREBUILT="/opt/.*"
-
-src_prepare() {
-	local s64
-	use amd64 || s64="_x64"
-	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
-
-	sed \
-		-e '/setenv TALOSN_DIR/d' \
-		-e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
-		-e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
-		-i talosn_ss || die
-}
-
-src_install() {
-	local TALOSN="/opt/${PN}"
-	exeinto ${TALOSN}/bin
-	doexe bin/*
-
-	exeinto ${TALOSN}/com
-	doexe com/*
-
-	exeinto /opt/bin
-	doexe talosn{,_ss}
-
-	insinto ${TALOSN}
-	doins -r tab
-
-	java-pkg_jarinto ${TALOSN}
-	java-pkg_dojar rama.jar
-
-	java-pkg_dolauncher jrama --jar rama.jar -into /opt/
-
-	if use examples; then
-		insinto /usr/share/${PN}
-		doins -r demo
-	fi
-
-	cat >> "${T}"/40talosn <<- EOF
-	TALOSN_DIR="${EPREFIX}/${TALOSN}"
-	#BLASTDB=
-	EOF
-	doenvd "${T}"/40talosn
-}

diff --git a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
index d308ded66..1fbcea875 100644
--- a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
+++ b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 inherit java-pkg-opt-2
 
 DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts"
-HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
-SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+HOMEPAGE="https://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="https://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
 
 SLOT="0"
 LICENSE="all-rights-reserved"
@@ -24,6 +24,7 @@ S="${WORKDIR}"
 QA_PREBUILT="/opt/.*"
 
 src_prepare() {
+	default
 	local s64
 	use amd64 || s64="_x64"
 	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die