From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 8138E13835A for ; Wed, 13 Jan 2021 20:18:26 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id CADFCE096A; Wed, 13 Jan 2021 20:18:25 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 971F0E096A for ; Wed, 13 Jan 2021 20:18:25 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id B653F340F58 for ; Wed, 13 Jan 2021 20:18:24 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 523DD496 for ; Wed, 13 Jan 2021 20:18:23 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1610569075.f7b9dacac004dc76d69a9b619f77963a5f83ca17.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/blasr/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/blasr/blasr-9999.ebuild X-VCS-Directories: sci-biology/blasr/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: f7b9dacac004dc76d69a9b619f77963a5f83ca17 X-VCS-Branch: master Date: Wed, 13 Jan 2021 20:18:23 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 322bafa9-b12e-41c7-b1f7-cd44303ecaa9 X-Archives-Hash: 70139ce091a68ac3dd04fc3e1ddabdbd commit: f7b9dacac004dc76d69a9b619f77963a5f83ca17 Author: Andrew Ammerlaan riseup net> AuthorDate: Wed Jan 13 20:17:55 2021 +0000 Commit: Andrew Ammerlaan riseup net> CommitDate: Wed Jan 13 20:17:55 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f7b9daca sci-biology/blasr: add dep on libblasr Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-biology/blasr/blasr-9999.ebuild | 43 +++++++++---------------------------- 1 file changed, 10 insertions(+), 33 deletions(-) diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-9999.ebuild index 3fe868450..6f5d10b16 100644 --- a/sci-biology/blasr/blasr-9999.ebuild +++ b/sci-biology/blasr/blasr-9999.ebuild @@ -1,49 +1,26 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit git-r3 +inherit meson git-r3 DESCRIPTION="The PacBio long read aligner" HOMEPAGE="http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR" -#SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz" -SRC_URI="" EGIT_REPO_URI="https://github.com/PacificBiosciences/blasr.git" +#SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz" LICENSE="blasr" SLOT="0" -IUSE="hdf5" KEYWORDS="" -CDEPEND=" - dev-util/meson - dev-util/ninja +BDEPEND=" dev-util/cmake - dev-util/pkgconfig" -# needs libblasr + virtual/pkgconfig +" DEPEND=" sci-biology/pbbam + sci-biology/libblasr dev-libs/boost:=[threads] - hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h -RDEPEND="" - -S="${WORKDIR}/blasr-9999" - -#src_configure(){ -# if use hdf5; then \ -# python ./configure.py --shared --sub --no-pbbam HDF5_INCLUDE="${EPREFIX}"/usr/include HDF5_LIB="${EPREFIX}"/usr/lib64 || die -# else -# python ./configure.py --shared --sub --no-pbbam || die -# fi -#} - -src_compile(){ - bash scripts/ci/build.sh || die - # BUG: meson.build:54:0: ERROR: Dependency "pbbam" not found, tried pkgconfig and cmake -} - -src_install() { - dodir /usr/bin - emake install ASSEMBLY_HOME="${ED}/usr" -} +" +RDEPEND="${DEPEND}"