[gentoo-commits] proj/sci:master commit in: sci-biology/NGSEPplugin-bin/, sci-biology/NGSEPplugin/

[gentoo-commits] proj/sci:master commit in: sci-biology/NGSEPplugin-bin/, sci-biology/NGSEPplugin/

[Andrew Ammerlaan]

commit:     de9721d49c6afc097ae9e0b20a098a8f2edb811a
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sun Jan 10 12:37:39 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sun Jan 10 12:37:39 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=de9721d4

sci-biology/NGSEPplugins: obsolete, replaced by guifx

need eclipse-sdk, which is not packaged in ::gentoo yet

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 .../NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild   | 28 -----------------
 sci-biology/NGSEPplugin-bin/metadata.xml           | 15 ---------
 sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild   | 36 ----------------------
 sci-biology/NGSEPplugin/metadata.xml               | 15 ---------
 4 files changed, 94 deletions(-)

diff --git a/sci-biology/NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild b/sci-biology/NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild
deleted file mode 100644
index f2a452138..000000000
--- a/sci-biology/NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild
+++ /dev/null
@@ -1,28 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit java-pkg-2 java-ant-2
-
-DESCRIPTION="NGSEP with Eclipse Plugin (CNV and indel discovery)"
-HOMEPAGE="https://sourceforge.net/p/ngsep/wiki/Home
-	https://github.com/NGSEP/NGSEPplugin"
-SRC_URI="https://sourceforge.net/projects/ngsep/files/OnlyPlugin/NGSEPplugin_3.3.1.201903140636.jar"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="
-	>=virtual/jdk-1.7:*
-	sci-biology/NGSEPcore-bin"
-RDEPEND="${DEPEND}
-	>=virtual/jre-1.7:*"
-
-S="${WORKDIR}"
-
-src_install(){
-	java-pkg_dojar "${DISTDIR}"/*.jar
-}

diff --git a/sci-biology/NGSEPplugin-bin/metadata.xml b/sci-biology/NGSEPplugin-bin/metadata.xml
deleted file mode 100644
index 642261079..000000000
--- a/sci-biology/NGSEPplugin-bin/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="sourceforge">ngsep</remote-id>
-	</upstream>
-</pkgmetadata>

diff --git a/sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild b/sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild
deleted file mode 100644
index 736121efb..000000000
--- a/sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit java-pkg-2 java-ant-2
-
-DESCRIPTION="NGSEP with Eclipse Plugin (CNV and indel discovery)"
-HOMEPAGE="https://sourceforge.net/p/ngsep/wiki/Home
-	https://github.com/NGSEP/NGSEPplugin"
-SRC_URI="https://sourceforge.net/projects/ngsep/files/SourceCode/NGSEPplugin_${PV}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="
-	>=virtual/jdk-1.7:*
-	dev-java/jcommon
-	dev-util/eclipse-sdk
-	dev-java/htsjdk
-	sci-biology/NGSEPcore"
-RDEPEND="${DEPEND}
-	>=virtual/jre-1.7:*"
-
-S="${WORKDIR}/${PN}_${PV}"
-
-src_prepare(){
-	rm -f lib/NGSEPcore_3.3.1.jar lib/SortSam.jar lib/jcommon-1.0.17.jar lib/xchart-2.4.2.jar || die
-	default
-}
-
-src_install(){
-	java-pkg_dojar *.jar
-}

diff --git a/sci-biology/NGSEPplugin/metadata.xml b/sci-biology/NGSEPplugin/metadata.xml
deleted file mode 100644
index 642261079..000000000
--- a/sci-biology/NGSEPplugin/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="sourceforge">ngsep</remote-id>
-	</upstream>
-</pkgmetadata>