[gentoo-commits] proj/sci:master commit in: sci-biology/quast/

["Horea Christian" <horea.christ@gmail.com>]

commit:     18a06b432038370bfdb59f2ab8b043d7874ccfce
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Jan  4 15:37:42 2021 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan  5 06:08:00 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=18a06b43

sci-biology/quast: version bump, add keywords, bump py targets

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/quast/quast-4.4.ebuild   | 44 ------------------------------------
 sci-biology/quast/quast-5.0.2.ebuild | 23 +++++++++++++++++++
 2 files changed, 23 insertions(+), 44 deletions(-)

diff --git a/sci-biology/quast/quast-4.4.ebuild b/sci-biology/quast/quast-4.4.ebuild
deleted file mode 100644
index 7ac6905c3..000000000
--- a/sci-biology/quast/quast-4.4.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit python-r1
-
-DESCRIPTION="Compare quality of multiple genome assemblies to each other"
-HOMEPAGE="http://bioinf.spbau.ru/QUAST" # no https
-SRC_URI="https://sourceforge.net/projects/quast/files/${P}.tar.gz"
-
-LICENSE="GPL-2" # and some other for the bundled copies, see http://quast.bioinf.spbau.ru/LICENSE
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="
-	dev-python/matplotlib[${PYTHON_USEDEP}]
-	sci-biology/mummer
-	sci-biology/glimmerhmm"
-#	sci-biology/GAGE
-#	sci-biology/GeneMarkS
-#   sci-biology/GeneMarkES
-#	sci-biology/MetaGeneMark
-#   sci-biology/ncbi-tools++
-#
-# comes with bundled executables in ./quast_libs
-
-# the above packages need to be created first
-
-RDEPEND="${DEPEND}"
-
-src_install(){
-	python_foreach_impl python_newscript quast.py quast
-	python_foreach_impl python_newscript metaquast.py metaquast
-	python_foreach_impl python_newscript icarus.py icarus
-
-	dodoc manual.html
-
-	# TODO: install quast_libs/ subdirectory contents into some PATH and PYTHON_PATH
-	# TODO: unbundle bundled executables
-}

diff --git a/sci-biology/quast/quast-5.0.2.ebuild b/sci-biology/quast/quast-5.0.2.ebuild
new file mode 100644
index 000000000..eb49a803b
--- /dev/null
+++ b/sci-biology/quast/quast-5.0.2.ebuild
@@ -0,0 +1,23 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{7,8,9} )
+
+inherit distutils-r1
+
+DESCRIPTION="Compare quality of multiple genome assemblies to each other"
+HOMEPAGE="http://bioinf.spbau.ru/QUAST" # no https
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+	dev-python/joblib[${PYTHON_USEDEP}]
+	dev-python/simplejson[${PYTHON_USEDEP}]
+"
+
+distutils_enable_tests --install setup.py