[gentoo-commits] proj/sci:master commit in: sci-biology/hts-python/

[gentoo-commits] proj/sci:master commit in: sci-biology/hts-python/

[Martin Mokrejs]

commit:     cc06a8d6aa189f8de3148ff4c7e860e693a7f888
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Apr 20 20:06:29 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Apr 20 20:06:29 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=cc06a8d6

sci-biology/hts-python: new package providing an alternative to pysam

Package-Manager: portage-2.2.28

 sci-biology/hts-python/hts-python-9999.ebuild | 22 ++++++++++++++++++++++
 sci-biology/hts-python/metadata.xml           | 12 ++++++++++++
 2 files changed, 34 insertions(+)

diff --git a/sci-biology/hts-python/hts-python-9999.ebuild b/sci-biology/hts-python/hts-python-9999.ebuild
new file mode 100644
index 0000000..fa24320
--- /dev/null
+++ b/sci-biology/hts-python/hts-python-9999.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1 git-r3
+
+DESCRIPTION="Pythonic wrapper for htslib C-API using python cffi (unlike pysam)"
+HOMEPAGE="https://github.com/brentp/hts-python"
+EGIT_REPO_URI="https://github.com/brentp/hts-python.git"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	dev-python/cffi[${PYTHON_USEDEP}]"

diff --git a/sci-biology/hts-python/metadata.xml b/sci-biology/hts-python/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/hts-python/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/hts-python/

[Horea Christian]

commit:     aa0014743326e6f3a98beef8df9cbbdf47a37b4a
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Jan  4 12:49:35 2021 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan  5 06:07:59 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=aa001474

sci-biology/hts-python: remove, latest commit aug 2017, does not compile

New fork: https://github.com/quinlan-lab/hts-python

Does not compile, no new commits since 2017

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/hts-python/hts-python-9999.ebuild | 21 ---------------------
 sci-biology/hts-python/metadata.xml           | 15 ---------------
 2 files changed, 36 deletions(-)

diff --git a/sci-biology/hts-python/hts-python-9999.ebuild b/sci-biology/hts-python/hts-python-9999.ebuild
deleted file mode 100644
index ba6779ab3..000000000
--- a/sci-biology/hts-python/hts-python-9999.ebuild
+++ /dev/null
@@ -1,21 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 git-r3
-
-DESCRIPTION="Pythonic wrapper for htslib C-API using python cffi (unlike pysam)"
-HOMEPAGE="https://github.com/brentp/hts-python"
-EGIT_REPO_URI="https://github.com/brentp/hts-python.git"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}
-	dev-python/cffi[${PYTHON_USEDEP}]"

diff --git a/sci-biology/hts-python/metadata.xml b/sci-biology/hts-python/metadata.xml
deleted file mode 100644
index ac270e09b..000000000
--- a/sci-biology/hts-python/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="github">brentp/hts-python</remote-id>
-	</upstream>
-</pkgmetadata>