* [gentoo-commits] proj/sci:master commit in: sci-biology/pysam/
@ 2015-04-30 20:15 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2015-04-30 20:15 UTC (permalink / raw
To: gentoo-commits
commit: 26603b1f757f06f0c7e234390eecd3f5ea6ddfbd
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Apr 30 20:14:31 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Apr 30 20:14:31 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=26603b1f
sci-biology/pysam: version bump; noted samtools dependencies as mentioned in download page accessible from https://code.google.com/p/pysam/downloads/list ; also added PYTHON_COMPAT for python3
Package-Manager: portage-2.2.18
sci-biology/pysam/ChangeLog | 12 ++++++++++++
sci-biology/pysam/metadata.xml | 8 ++++++++
sci-biology/pysam/pysam-0.6-r2.ebuild | 26 ++++++++++++++++++++++++++
sci-biology/pysam/pysam-0.7.5.ebuild | 26 ++++++++++++++++++++++++++
4 files changed, 72 insertions(+)
diff --git a/sci-biology/pysam/ChangeLog b/sci-biology/pysam/ChangeLog
new file mode 100644
index 0000000..4b24154
--- /dev/null
+++ b/sci-biology/pysam/ChangeLog
@@ -0,0 +1,12 @@
+# ChangeLog for sci-biology/pysam
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*pysam-0.6-r2 (30 Apr 2015)
+*pysam-0.7.5 (30 Apr 2015)
+
+ 30 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+ +pysam-0.6-r2.ebuild, +pysam-0.7.5.ebuild:
+ sci-biology/pysam: version bump; noted samtools dependencies as mentioned in
+ download page accessible from https://code.google.com/p/pysam/downloads/list ;
+ also added PYTHON_COMPAT for python3
diff --git a/sci-biology/pysam/metadata.xml b/sci-biology/pysam/metadata.xml
new file mode 100644
index 0000000..49afc3c
--- /dev/null
+++ b/sci-biology/pysam/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <upstream>
+ <remote-id type="google-code">pysam</remote-id>
+ </upstream>
+</pkgmetadata>
diff --git a/sci-biology/pysam/pysam-0.6-r2.ebuild b/sci-biology/pysam/pysam-0.6-r2.ebuild
new file mode 100644
index 0000000..d972ba1
--- /dev/null
+++ b/sci-biology/pysam/pysam-0.6-r2.ebuild
@@ -0,0 +1,26 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/pysam/pysam-0.6-r1.ebuild,v 1.2 2015/04/13 06:22:56 jlec Exp $
+
+EAPI="5"
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
+HOMEPAGE="http://code.google.com/p/pysam http://pypi.python.org/pypi/pysam"
+SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
+ <=sci-biology/samtools-0.1.18"
+
+python_compile() {
+ python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
+ distutils-r1_python_compile
+}
diff --git a/sci-biology/pysam/pysam-0.7.5.ebuild b/sci-biology/pysam/pysam-0.7.5.ebuild
new file mode 100644
index 0000000..888734b
--- /dev/null
+++ b/sci-biology/pysam/pysam-0.7.5.ebuild
@@ -0,0 +1,26 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/pysam/pysam-0.6-r1.ebuild,v 1.2 2015/04/13 06:22:56 jlec Exp $
+
+EAPI="5"
+
+PYTHON_COMPAT=( python{2_7,3_3,3_4})
+
+inherit distutils-r1
+
+DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
+HOMEPAGE="http://code.google.com/p/pysam http://pypi.python.org/pypi/pysam"
+SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
+ <=sci-biology/samtools-0.1.19"
+
+python_compile() {
+ python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
+ distutils-r1_python_compile
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/pysam/
@ 2015-05-02 16:29 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2015-05-02 16:29 UTC (permalink / raw
To: gentoo-commits
commit: 3ea57834601daea6b91432738e088d0a18428d7b
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat May 2 16:28:41 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat May 2 16:28:41 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3ea57834
added PYTHON_USEDEP
sci-biology/pysam/ChangeLog | 4 ++++
sci-biology/pysam/pysam-0.6-r2.ebuild | 2 +-
sci-biology/pysam/pysam-0.7.5.ebuild | 2 +-
3 files changed, 6 insertions(+), 2 deletions(-)
diff --git a/sci-biology/pysam/ChangeLog b/sci-biology/pysam/ChangeLog
index 4b24154..2fbcbbc 100644
--- a/sci-biology/pysam/ChangeLog
+++ b/sci-biology/pysam/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 02 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ pysam-0.6-r2.ebuild, pysam-0.7.5.ebuild:
+ added PYTHON_USEDEP
+
*pysam-0.6-r2 (30 Apr 2015)
*pysam-0.7.5 (30 Apr 2015)
diff --git a/sci-biology/pysam/pysam-0.6-r2.ebuild b/sci-biology/pysam/pysam-0.6-r2.ebuild
index d972ba1..5225a62 100644
--- a/sci-biology/pysam/pysam-0.6-r2.ebuild
+++ b/sci-biology/pysam/pysam-0.6-r2.ebuild
@@ -18,7 +18,7 @@ KEYWORDS="~amd64 ~x86"
IUSE=""
DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
- <=sci-biology/samtools-0.1.18"
+ <=sci-biology/samtools-0.1.18[${PYTHON_USEDEP}]"
python_compile() {
python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
diff --git a/sci-biology/pysam/pysam-0.7.5.ebuild b/sci-biology/pysam/pysam-0.7.5.ebuild
index 888734b..42e24ca 100644
--- a/sci-biology/pysam/pysam-0.7.5.ebuild
+++ b/sci-biology/pysam/pysam-0.7.5.ebuild
@@ -18,7 +18,7 @@ KEYWORDS="~amd64 ~x86"
IUSE=""
DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
- <=sci-biology/samtools-0.1.19"
+ <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}]"
python_compile() {
python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/pysam/
@ 2015-05-04 14:02 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2015-05-04 14:02 UTC (permalink / raw
To: gentoo-commits
commit: 873670a86527262a39f625944c64be11265f7052
Author: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
AuthorDate: Mon May 4 08:17:56 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon May 4 08:17:56 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=873670a8
Drop keywords; Fix deps
Package-Manager: portage-2.2.18
sci-biology/pysam/ChangeLog | 6 ++++++
sci-biology/pysam/pysam-0.6-r2.ebuild | 2 +-
sci-biology/pysam/pysam-0.7.5.ebuild | 4 ++--
3 files changed, 9 insertions(+), 3 deletions(-)
diff --git a/sci-biology/pysam/ChangeLog b/sci-biology/pysam/ChangeLog
index 2fbcbbc..e48ec44 100644
--- a/sci-biology/pysam/ChangeLog
+++ b/sci-biology/pysam/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 04 May 2015; Marius Brehler <marbre@linux.sungazer.de> pysam-0.7.5.ebuild:
+ Fix deps
+
+ 04 May 2015; Marius Brehler <marbre@linux.sungazer.de> pysam-0.6-r2.ebuild:
+ Drop keywords due to broken deps
+
02 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
pysam-0.6-r2.ebuild, pysam-0.7.5.ebuild:
added PYTHON_USEDEP
diff --git a/sci-biology/pysam/pysam-0.6-r2.ebuild b/sci-biology/pysam/pysam-0.6-r2.ebuild
index 5225a62..ee86039 100644
--- a/sci-biology/pysam/pysam-0.6-r2.ebuild
+++ b/sci-biology/pysam/pysam-0.6-r2.ebuild
@@ -14,7 +14,7 @@ SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS=""
IUSE=""
DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
diff --git a/sci-biology/pysam/pysam-0.7.5.ebuild b/sci-biology/pysam/pysam-0.7.5.ebuild
index 42e24ca..c516382 100644
--- a/sci-biology/pysam/pysam-0.7.5.ebuild
+++ b/sci-biology/pysam/pysam-0.7.5.ebuild
@@ -4,7 +4,7 @@
EAPI="5"
-PYTHON_COMPAT=( python{2_7,3_3,3_4})
+PYTHON_COMPAT=( python2_7 )
inherit distutils-r1
@@ -18,7 +18,7 @@ KEYWORDS="~amd64 ~x86"
IUSE=""
DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
- <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}]"
+ <=sci-biology/samtools-0.1.19-r2[${PYTHON_USEDEP}]"
python_compile() {
python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/pysam/
@ 2015-12-04 7:01 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2015-12-04 7:01 UTC (permalink / raw
To: gentoo-commits
commit: 94d90ab3b484a298828765dcccac7416741911d2
Author: Ted Tanberry <ted.tanberry <AT> gmail <DOT> com>
AuthorDate: Thu Dec 3 21:59:00 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Dec 3 21:59:00 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=94d90ab3
sci-biology/pysam: version bump to 0.8.4
Package-Manager: portage-2.2.26
sci-biology/pysam/ChangeLog | 5 +++++
sci-biology/pysam/pysam-0.8.4.ebuild | 27 +++++++++++++++++++++++++++
2 files changed, 32 insertions(+)
diff --git a/sci-biology/pysam/ChangeLog b/sci-biology/pysam/ChangeLog
index c4c9a54..492a5fc 100644
--- a/sci-biology/pysam/ChangeLog
+++ b/sci-biology/pysam/ChangeLog
@@ -2,6 +2,11 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+*pysam-0.8.4 (03 Dec 2015)
+
+ 03 Dec 2015; Ted Tanberry <ted.tanberry@gmail.com> +pysam-0.8.4.ebuild:
+ sci-biology/pysam: version bump to 0.8.4
+
04 May 2015; Marius Brehler <marbre@linux.sungazer.de> pysam-0.7.5.ebuild:
Fix deps
diff --git a/sci-biology/pysam/pysam-0.8.4.ebuild b/sci-biology/pysam/pysam-0.8.4.ebuild
new file mode 100644
index 0000000..2b4d3d9
--- /dev/null
+++ b/sci-biology/pysam/pysam-0.8.4.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="5"
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
+HOMEPAGE="https://github.com/pysam-developers/pysam http://pypi.python.org/pypi/pysam"
+SRC_URI="https://github.com/pysam-developers/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
+ >=sci-biology/samtools-1.2[${PYTHON_USEDEP}]
+ >=sci-libs/htslib-1.2.1"
+
+python_compile() {
+ python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
+ distutils-r1_python_compile
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/pysam/
@ 2016-04-13 10:47 Marius Brehler
0 siblings, 0 replies; 6+ messages in thread
From: Marius Brehler @ 2016-04-13 10:47 UTC (permalink / raw
To: gentoo-commits
commit: b3b06688c38bc3f28d68be75e5e30ff1adcb1386
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Apr 9 22:14:19 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Sat Apr 9 22:14:19 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b3b06688
sci-biology/pysam: Remove old, latest 0.9.0 in main tree
Package-Manager: portage-2.2.28
sci-biology/pysam/pysam-0.6-r2.ebuild | 26 --------------------------
sci-biology/pysam/pysam-0.8.3.ebuild | 29 -----------------------------
sci-biology/pysam/pysam-0.8.4.ebuild | 27 ---------------------------
3 files changed, 82 deletions(-)
diff --git a/sci-biology/pysam/pysam-0.6-r2.ebuild b/sci-biology/pysam/pysam-0.6-r2.ebuild
deleted file mode 100644
index 01f86da..0000000
--- a/sci-biology/pysam/pysam-0.6-r2.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="5"
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
-HOMEPAGE="http://code.google.com/p/pysam http://pypi.python.org/pypi/pysam"
-SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
- <=sci-biology/samtools-0.1.18[${PYTHON_USEDEP}]"
-
-python_compile() {
- python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
- distutils-r1_python_compile
-}
diff --git a/sci-biology/pysam/pysam-0.8.3.ebuild b/sci-biology/pysam/pysam-0.8.3.ebuild
deleted file mode 100644
index a08855f..0000000
--- a/sci-biology/pysam/pysam-0.8.3.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="5"
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
-HOMEPAGE="https://github.com/pysam-developers/pysam http://pypi.python.org/pypi/pysam"
-SRC_URI="https://github.com/pysam-developers/${PN}/archive/v${PV}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
- >=sci-biology/samtools-1.2[${PYTHON_USEDEP}]
- >=sci-libs/htslib-1.2.1"
-
-PATCHES=( "${FILESDIR}/${P}-cython-0.23.patch" )
-
-python_compile() {
- python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
- distutils-r1_python_compile
-}
diff --git a/sci-biology/pysam/pysam-0.8.4.ebuild b/sci-biology/pysam/pysam-0.8.4.ebuild
deleted file mode 100644
index 2b4d3d9..0000000
--- a/sci-biology/pysam/pysam-0.8.4.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="5"
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
-HOMEPAGE="https://github.com/pysam-developers/pysam http://pypi.python.org/pypi/pysam"
-SRC_URI="https://github.com/pysam-developers/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
- >=sci-biology/samtools-1.2[${PYTHON_USEDEP}]
- >=sci-libs/htslib-1.2.1"
-
-python_compile() {
- python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
- distutils-r1_python_compile
-}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/pysam/
@ 2021-01-03 6:31 Horea Christian
0 siblings, 0 replies; 6+ messages in thread
From: Horea Christian @ 2021-01-03 6:31 UTC (permalink / raw
To: gentoo-commits
commit: eeef69fea4f72eb2bd4400a11d80f3a5db0a3d92
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Jan 2 13:09:32 2021 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Jan 3 06:25:30 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=eeef69fe
sci-biology/pysam: remove, package is in ::gentoo
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/pysam/metadata.xml | 12 ---------
sci-biology/pysam/pysam-0.15.3.ebuild | 46 -----------------------------------
2 files changed, 58 deletions(-)
diff --git a/sci-biology/pysam/metadata.xml b/sci-biology/pysam/metadata.xml
deleted file mode 100644
index 6182254bd..000000000
--- a/sci-biology/pysam/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="google-code">pysam</remote-id>
- <remote-id type="github">pysam-developers/pysam</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-biology/pysam/pysam-0.15.3.ebuild b/sci-biology/pysam/pysam-0.15.3.ebuild
deleted file mode 100644
index 4224df0be..000000000
--- a/sci-biology/pysam/pysam-0.15.3.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 python3_6 )
-
-inherit distutils-r1
-
-DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
-HOMEPAGE="
- https://github.com/pysam-developers/pysam
- https://pypi.org/project/pysam/"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS=""
-
-# current code wraps 3rd-party code from htslib-1.9, samtools-1.9 and bcftools-1.9
-RDEPEND="=sci-libs/htslib-1.9*:="
-DEPEND="${RDEPEND}
- dev-python/cython[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]"
-
-python_prepare_all() {
- # unbundle htslib
- export HTSLIB_MODE="external"
- export HTSLIB_INCLUDE_DIR="${EPREFIX}"/usr/include
- export HTSLIB_LIBRARY_DIR="${EPREFIX}"/usr/$(get_libdir)
- rm -r htslib || die
-
- # prevent setup.py from adding RPATHs
- sed -e "/ext\.extra_link_args += \['-Wl,-rpath,\$ORIGIN'\]/d" \
- -i cy_build.py || die
- sed -e '/runtime_library_dirs=htslib_library_dirs/d' \
- -i setup.py || die
-
- distutils-r1_python_prepare_all
-}
-
-src_compile() {
- # TODO
- # empty compile, as the build system runs the whole build again in install
- :
-}
^ permalink raw reply related [flat|nested] 6+ messages in thread
end of thread, other threads:[~2021-01-03 6:31 UTC | newest]
Thread overview: 6+ messages (download: mbox.gz follow: Atom feed
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