[gentoo-commits] proj/sci:master commit in: sci-biology/pybedtools/

["Aisha Tammy" <gentoo@aisha.cc>]

commit:     45f4ecf6f9d5e9c4e699ea84a7b4b8bb6c9740d6
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Dec 31 10:34:09 2020 +0000
Commit:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Thu Dec 31 12:04:10 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=45f4ecf6

sci-biology/pybedtools: drop py3.6

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
Closes: https://github.com/gentoo/sci/pull/1012
Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>

 sci-biology/pybedtools/pybedtools-0.8.0.ebuild | 32 +++++++++++---------------
 1 file changed, 13 insertions(+), 19 deletions(-)

diff --git a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild b/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
index a91de8cca..6d391b0a8 100644
--- a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
+++ b/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{6..9} )
+PYTHON_COMPAT=( python3_{7..9} )
 
 inherit distutils-r1
 
@@ -13,8 +13,8 @@ SRC_URI="https://github.com/daler/pybedtools/archive/v${PV}.tar.gz -> ${P}.tar.g
 
 LICENSE="MIT"
 SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc minimal"
+KEYWORDS="~amd64 ~x86"
+IUSE="minimal"
 RESTRICT="test"
 # Tests reported to fail on Gentoo:
 # https://github.com/daler/pybedtools/issues/329
@@ -23,29 +23,23 @@ RESTRICT="test"
 RDEPEND="
 	sci-biology/bedtools
 	sci-biology/pysam
-	dev-python/numpy
-	dev-python/pandas
-	!minimal? ( sci-libs/htslib )
-	doc? ( dev-python/sphinx )"
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/pandas[${PYTHON_USEDEP}]
+	!minimal? ( sci-libs/htslib )"
 # optional-requirements.txt also lists:
 # ucsc-bigwigtobedgraph
 # ucsc-bedgraphtobigwig
 # ucsc-wigtobigwig
-DEPEND="${RDEPEND}
+BDEPEND="${RDEPEND}
 	dev-python/cython[${PYTHON_USEDEP}]"
 
+# ToDo: fix docs building
+# ModuleNotFoundError: No module named 'pybedtools.cbedtools'
+# even if pybedtools is installed
+#distutils_enable_sphinx docs/source
+distutils_enable_tests pytest
+
 src_compile(){
 	python setup.py cythonize
 	distutils-r1_src_compile
-	use doc && cd docs && emake html
-}
-
-src_install(){
-	distutils-r1_src_install
-	if use doc; then
-		insinto /usr/share/doc/"${PN}"
-		doins -r docs/build/html
-	fi
 }
-
-distutils_enable_tests pytest