* [gentoo-commits] repo/gentoo:master commit in: sci-biology/gmap/
@ 2016-01-21 18:36 David Seifert
0 siblings, 0 replies; 4+ messages in thread
From: David Seifert @ 2016-01-21 18:36 UTC (permalink / raw
To: gentoo-commits
commit: 7cd35418c6930fd640b71b0a19c87a757519eeb0
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Jan 21 17:49:49 2016 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Jan 21 18:36:17 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7cd35418
sci-biology/gmap: Version bump to 2015.12.31.5
Gentoo-Bug: 521640
* Remove use of 'einstall'
* EAPI=6
Package-Manager: portage-2.2.27
sci-biology/gmap/Manifest | 1 +
sci-biology/gmap/gmap-2015.12.31.5.ebuild | 21 +++++++++++++++++++++
2 files changed, 22 insertions(+)
diff --git a/sci-biology/gmap/Manifest b/sci-biology/gmap/Manifest
index b15b920..b31c441 100644
--- a/sci-biology/gmap/Manifest
+++ b/sci-biology/gmap/Manifest
@@ -1,2 +1,3 @@
DIST gmap-gsnap-2011-10-07.tar.gz 3404351 SHA256 e508009592d5dd3442345dc5ce6fd9930366e008efa32e4c72dc243a495f3f20 SHA512 6546be4da41c45e41bdab71dcda69cbf172bc186ca64a2543461eb050f383641a13fea0cfcc6bb76b87cc4faa4c593944b029ee1ca2ba68dbaf7d939d0bf02e1 WHIRLPOOL 9f5cd62fb9cbb2cc73d6b971f29d8816e67e1b4b1b9906d8b06ddf99ffd9356bcdf19869066fb14ca5d3ad93a3b70527d05237be2f438da4db86898103bd2bf2
DIST gmap-gsnap-2012-07-20.tar.gz 3623122 SHA256 4cd0c0a313cb7a35b8c7afd45b545e6062b343739f9ef522a09001d448aeb5ec SHA512 bbc22509fc63814a102f96ce0da6a1119c78de7fc2fc4fe17cc4d97881313a77818eaedc51bb6d4ce2426560925fe5ffa121acf972d7b3b097e8d3d65efb7b95 WHIRLPOOL 7318377e4cf80db5c5a9495bf68653fbc48051d6fa5748ed796e18888b6e20215d2714b753358fb4cc97aa9c8e441d53ef616ded6ee0923fe78312e78ee91e82
+DIST gmap-gsnap-2015-12-31.v5.tar.gz 4169874 SHA256 2317ba63578ba87f534689c0bf6930a9b177df4aa8a75b2a82f2118760ff3037 SHA512 d42623c60c298d9d3009893432f3eef8cb764bf7cf26b42e6a95b27a468fffab20c8307597c4c8e1afdd61f35652246568c3162137ce59fc4850aaab1062bb48 WHIRLPOOL 2571b7d6a7bddf11b4cbaec22377af19a84633f7d8fe9de74b4c2fa12e0480a76df9a1f52b44199021aa05f6d846ef98d8fbb6f978e64f5b452bbaaafbdd6974
diff --git a/sci-biology/gmap/gmap-2015.12.31.5.ebuild b/sci-biology/gmap/gmap-2015.12.31.5.ebuild
new file mode 100644
index 0000000..acd893f
--- /dev/null
+++ b/sci-biology/gmap/gmap-2015.12.31.5.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit versionator
+
+MY_BASE_PV="$(replace_all_version_separators '-' $(get_version_component_range 1-3))"
+MY_PV="${MY_BASE_PV}.v$(get_version_component_range 4)"
+
+DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
+HOMEPAGE="http://research-pub.gene.com/gmap/"
+SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz"
+
+LICENSE="gmap"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+S="${WORKDIR}/gmap-${MY_BASE_PV}"
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/gmap/
@ 2016-11-27 12:43 Pacho Ramos
0 siblings, 0 replies; 4+ messages in thread
From: Pacho Ramos @ 2016-11-27 12:43 UTC (permalink / raw
To: gentoo-commits
commit: b31cfe0f987401c87a608ee37f57158f70c071e0
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Nov 27 12:39:20 2016 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Nov 27 12:43:50 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b31cfe0f
sci-biology/gmap: Drop old (#597984)
Package-Manager: portage-2.3.2
sci-biology/gmap/Manifest | 2 --
sci-biology/gmap/gmap-2011.10.07.ebuild | 36 ---------------------------------
sci-biology/gmap/gmap-2012.07.20.ebuild | 36 ---------------------------------
3 files changed, 74 deletions(-)
diff --git a/sci-biology/gmap/Manifest b/sci-biology/gmap/Manifest
index b31c441..e0e1c10 100644
--- a/sci-biology/gmap/Manifest
+++ b/sci-biology/gmap/Manifest
@@ -1,3 +1 @@
-DIST gmap-gsnap-2011-10-07.tar.gz 3404351 SHA256 e508009592d5dd3442345dc5ce6fd9930366e008efa32e4c72dc243a495f3f20 SHA512 6546be4da41c45e41bdab71dcda69cbf172bc186ca64a2543461eb050f383641a13fea0cfcc6bb76b87cc4faa4c593944b029ee1ca2ba68dbaf7d939d0bf02e1 WHIRLPOOL 9f5cd62fb9cbb2cc73d6b971f29d8816e67e1b4b1b9906d8b06ddf99ffd9356bcdf19869066fb14ca5d3ad93a3b70527d05237be2f438da4db86898103bd2bf2
-DIST gmap-gsnap-2012-07-20.tar.gz 3623122 SHA256 4cd0c0a313cb7a35b8c7afd45b545e6062b343739f9ef522a09001d448aeb5ec SHA512 bbc22509fc63814a102f96ce0da6a1119c78de7fc2fc4fe17cc4d97881313a77818eaedc51bb6d4ce2426560925fe5ffa121acf972d7b3b097e8d3d65efb7b95 WHIRLPOOL 7318377e4cf80db5c5a9495bf68653fbc48051d6fa5748ed796e18888b6e20215d2714b753358fb4cc97aa9c8e441d53ef616ded6ee0923fe78312e78ee91e82
DIST gmap-gsnap-2015-12-31.v5.tar.gz 4169874 SHA256 2317ba63578ba87f534689c0bf6930a9b177df4aa8a75b2a82f2118760ff3037 SHA512 d42623c60c298d9d3009893432f3eef8cb764bf7cf26b42e6a95b27a468fffab20c8307597c4c8e1afdd61f35652246568c3162137ce59fc4850aaab1062bb48 WHIRLPOOL 2571b7d6a7bddf11b4cbaec22377af19a84633f7d8fe9de74b4c2fa12e0480a76df9a1f52b44199021aa05f6d846ef98d8fbb6f978e64f5b452bbaaafbdd6974
diff --git a/sci-biology/gmap/gmap-2011.10.07.ebuild b/sci-biology/gmap/gmap-2011.10.07.ebuild
deleted file mode 100644
index fb20296..00000000
--- a/sci-biology/gmap/gmap-2011.10.07.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="2"
-
-MY_PV=${PV//./-}
-
-DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
-HOMEPAGE="http://www.gene.com/share/gmap/"
-SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz"
-
-LICENSE="gmap"
-SLOT="0"
-IUSE="+samtools +goby"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="samtools? ( sci-biology/samtools )
- goby? ( sci-biology/goby-cpp )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/gmap-${MY_PV}"
-
-src_configure() {
- econf $(use_with samtools) \
- $(use_with goby goby /usr)
-}
-
-src_install() {
- einstall || die
- dodoc AUTHORS ChangeLog README
-}
-
-src_test() {
- emake check || die
-}
diff --git a/sci-biology/gmap/gmap-2012.07.20.ebuild b/sci-biology/gmap/gmap-2012.07.20.ebuild
deleted file mode 100644
index cd20c09..00000000
--- a/sci-biology/gmap/gmap-2012.07.20.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=4
-
-MY_PV=${PV//./-}
-
-DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
-HOMEPAGE="http://research-pub.gene.com/gmap/"
-SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz"
-
-LICENSE="gmap"
-SLOT="0"
-IUSE="+samtools +goby"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="samtools? ( sci-biology/samtools )
- goby? ( sci-biology/goby-cpp )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/gmap-${MY_PV}"
-
-src_configure() {
- econf $(use_with samtools) \
- $(use_with goby goby /usr)
-}
-
-src_install() {
- einstall || die
- dodoc AUTHORS ChangeLog README
-}
-
-src_test() {
- emake check || die
-}
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/gmap/
@ 2016-11-27 13:18 Pacho Ramos
0 siblings, 0 replies; 4+ messages in thread
From: Pacho Ramos @ 2016-11-27 13:18 UTC (permalink / raw
To: gentoo-commits
commit: 4636a20be633b68282242d81e33f50660ab8681c
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Nov 27 13:15:13 2016 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Nov 27 13:18:04 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4636a20b
sci-biology/gmap: Clean metadata.xml
Package-Manager: portage-2.3.2
sci-biology/gmap/metadata.xml | 4 ----
1 file changed, 4 deletions(-)
diff --git a/sci-biology/gmap/metadata.xml b/sci-biology/gmap/metadata.xml
index 08422c6..959160f 100644
--- a/sci-biology/gmap/metadata.xml
+++ b/sci-biology/gmap/metadata.xml
@@ -5,8 +5,4 @@
<email>sci-biology@gentoo.org</email>
<name>Gentoo Biology Project</name>
</maintainer>
- <use>
- <flag name="samtools">Enable support for samtools</flag>
- <flag name="goby">Enable support for goby</flag>
- </use>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/gmap/
@ 2020-11-01 18:37 David Seifert
0 siblings, 0 replies; 4+ messages in thread
From: David Seifert @ 2020-11-01 18:37 UTC (permalink / raw
To: gentoo-commits
commit: 9a8bd40cd638b96b643898fef0a949b4fe313953
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Nov 1 18:36:02 2020 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Nov 1 18:36:02 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9a8bd40c
sci-biology/gmap: Remove old 2015.12.31.5
Closes: https://bugs.gentoo.org/708626
Package-Manager: Portage-3.0.8, Repoman-3.0.2
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/gmap/Manifest | 1 -
sci-biology/gmap/gmap-2015.12.31.5.ebuild | 20 --------------------
2 files changed, 21 deletions(-)
diff --git a/sci-biology/gmap/Manifest b/sci-biology/gmap/Manifest
index 226efe61e42..6f045f9bf37 100644
--- a/sci-biology/gmap/Manifest
+++ b/sci-biology/gmap/Manifest
@@ -1,2 +1 @@
-DIST gmap-gsnap-2015-12-31.v5.tar.gz 4169874 BLAKE2B bbbf53b72b5b7f97ba0eb05db7daa3d1f8a9330f32b96c2460a904a9f9f22078093f6fa585a12d4275e0943145ee78ef99348de4f19349dfa4e81d5f65572e1c SHA512 d42623c60c298d9d3009893432f3eef8cb764bf7cf26b42e6a95b27a468fffab20c8307597c4c8e1afdd61f35652246568c3162137ce59fc4850aaab1062bb48
DIST gmap-gsnap-2020-10-27.tar.gz 4480720 BLAKE2B 9f8e8bfab19c079111d42ec466dd145385d35e3fde0a809e46776ed1b62b599664f12618803ea4475b6961a053423a8794d0b77eb0b308bdfa927b5bcaa7d49c SHA512 22e59adf404f5ef524b3cd472fb3124d03c8c55aa7946b9dc3901f5070339dc765f8f1ecc7e394b69a14bf80923f7a9db8d545e45328a346996b3288115a535b
diff --git a/sci-biology/gmap/gmap-2015.12.31.5.ebuild b/sci-biology/gmap/gmap-2015.12.31.5.ebuild
deleted file mode 100644
index 82ae6f3f274..00000000000
--- a/sci-biology/gmap/gmap-2015.12.31.5.ebuild
+++ /dev/null
@@ -1,20 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit versionator
-
-MY_BASE_PV="$(replace_all_version_separators '-' $(get_version_component_range 1-3))"
-MY_PV="${MY_BASE_PV}.v$(get_version_component_range 4)"
-
-DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
-HOMEPAGE="http://research-pub.gene.com/gmap/"
-SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz"
-
-LICENSE="gmap"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-S="${WORKDIR}/gmap-${MY_BASE_PV}"
^ permalink raw reply related [flat|nested] 4+ messages in thread
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