From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id F1731138359 for ; Sun, 1 Nov 2020 18:37:12 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 2EA17E0824; Sun, 1 Nov 2020 18:37:12 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 17678E0824 for ; Sun, 1 Nov 2020 18:37:12 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 4A867340CDF for ; Sun, 1 Nov 2020 18:37:08 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id BFFDB3FA for ; Sun, 1 Nov 2020 18:37:06 +0000 (UTC) From: "David Seifert" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "David Seifert" Message-ID: <1604255756.5e71680b7a85431b46e92a2bb86e9f0507fcee3e.soap@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/paml/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/paml/Manifest sci-biology/paml/paml-4.4c-r1.ebuild X-VCS-Directories: sci-biology/paml/ X-VCS-Committer: soap X-VCS-Committer-Name: David Seifert X-VCS-Revision: 5e71680b7a85431b46e92a2bb86e9f0507fcee3e X-VCS-Branch: master Date: Sun, 1 Nov 2020 18:37:06 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 4fb51d8c-2979-480f-8b05-de4d98ad2fa8 X-Archives-Hash: 99214611a9a5057e0a35c4963b2e4944 commit: 5e71680b7a85431b46e92a2bb86e9f0507fcee3e Author: David Seifert gentoo org> AuthorDate: Sun Nov 1 18:35:56 2020 +0000 Commit: David Seifert gentoo org> CommitDate: Sun Nov 1 18:35:56 2020 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5e71680b sci-biology/paml: Remove old 4.4c-r1 Closes: https://bugs.gentoo.org/706708 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert gentoo.org> sci-biology/paml/Manifest | 1 - sci-biology/paml/paml-4.4c-r1.ebuild | 47 ------------------------------------ 2 files changed, 48 deletions(-) diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest index e0bf2de6171..87d673016fb 100644 --- a/sci-biology/paml/Manifest +++ b/sci-biology/paml/Manifest @@ -1,2 +1 @@ -DIST paml4.4c.tar.gz 2891715 BLAKE2B 04449b80e4fec080eabb69108d399a32278fcc79221e3c0d087ad1d978517ae2655bce8c300260dfb99d4d60700369ec338fa71c1d48f41a82017dbd3cae2397 SHA512 6a5f6d5baa91afa924ea392b76e59db6691fa9d6ee13a248dfe6e46d3fc83178ce41c2991de1c4cdb21952ee53771298aa0c62060f47d0dd84eaa76eb533498a DIST paml4.9j.tgz 6380272 BLAKE2B 58fc40904aff6ae539613e772fc0525b557c1e72c1a7a1d95176987bafed8771624ae6c53803bc71c5821a52de8212a49ad99c02c408870ec929c15b6bf217e0 SHA512 c5f3c42409bbaf5ac67c816a245f1d3175ee449dcf10232d9de539130341f80f85ae53518cbca549b1f42ddf64a6e8140a22b9da091d458b425512f11f8c1758 diff --git a/sci-biology/paml/paml-4.4c-r1.ebuild b/sci-biology/paml/paml-4.4c-r1.ebuild deleted file mode 100644 index 27fe5ed4c76..00000000000 --- a/sci-biology/paml/paml-4.4c-r1.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs versionator - -MY_P=$(version_format_string '${PN}$1$2') - -DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" -HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" -SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" - -LICENSE="free-noncomm" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="" - -S=${WORKDIR}/${MY_P} - -src_prepare() { - # Notice send by mail to prof. Ziheng Yang - sed -i "s/\$(CC)/& \$(LDFLAGS)/" src/Makefile || die #335608 -} - -src_compile() { - emake -C src \ - CC="$(tc-getCC)" \ - CFLAGS="${CFLAGS} -Wno-unused-result" \ - LDFLAGS="${LDFLAGS}" -} - -src_install() { - dodoc README.txt doc/* - - insinto /usr/share/${PN}/control - doins *.ctl - - insinto /usr/share/${PN}/dat - doins stewart* *.dat dat/* - - insinto /usr/share/${PN} - doins -r examples/ - - cd src || die - dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 -}