[gentoo-commits] repo/gentoo:master commit in: sci-biology/profphd/, sci-biology/profphd/files/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/profphd/, sci-biology/profphd/files/

[David Seifert]

commit:     0a8ba900d4d39a8f4d762fd9c04e470e3272b1d4
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Tue Oct 27 21:40:10 2020 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Tue Oct 27 21:40:10 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0a8ba900

sci-biology/profphd: Port to EAPI 7

Package-Manager: Portage-3.0.8, Repoman-3.0.2
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 .../profphd/files/profphd-1.0.40-symlink.patch     | 11 ++++++++
 sci-biology/profphd/profphd-1.0.40.ebuild          | 30 ++++++++++------------
 2 files changed, 24 insertions(+), 17 deletions(-)

diff --git a/sci-biology/profphd/files/profphd-1.0.40-symlink.patch b/sci-biology/profphd/files/profphd-1.0.40-symlink.patch
new file mode 100644
index 00000000000..7733d55af4a
--- /dev/null
+++ b/sci-biology/profphd/files/profphd-1.0.40-symlink.patch
@@ -0,0 +1,11 @@
+--- a/src/prof/Makefile
++++ b/src/prof/Makefile
+@@ -40,7 +40,7 @@
+ 		./. $(DESTDIR)$(prefix)/share/profphd/prof/.
+ 	find $(DESTDIR)$(prefix)/share/profphd/prof/embl/phd.pl $(DESTDIR)$(prefix)/share/profphd/prof/scr/CONFprof.pl $(DESTDIR)$(prefix)/share/profphd/prof/prof $(DESTDIR)$(prefix)/share/profphd/prof/scr/lib/prof.pm \
+ 		-type f -exec sed -i -e 's|__PREFIX__|$(prefix)|g;s|__VERSION__|$(VERSION)|;' {} \;
+-	rm -rf $(DESTDIR)$(prefix)/bin/prof && mkdir -p $(DESTDIR)$(prefix)/bin && ln -s ../share/profphd/prof/prof $(DESTDIR)$(prefix)/bin/prof
++	rm -rf $(DESTDIR)$(prefix)/bin/prof && mkdir -p $(DESTDIR)$(prefix)/bin && ln -s ../share/profphd/prof/prof $(DESTDIR)$(prefix)/bin/profphd
+ 
+ install-neuralnet:
+ 	mkdir -p $(DESTDIR)$(prefix)/share/profphd/prof/embl/para && rsync -aC \

diff --git a/sci-biology/profphd/profphd-1.0.40.ebuild b/sci-biology/profphd/profphd-1.0.40.ebuild
index 8e24cebeb5f..4f9a16a9fe9 100644
--- a/sci-biology/profphd/profphd-1.0.40.ebuild
+++ b/sci-biology/profphd/profphd-1.0.40.ebuild
@@ -1,37 +1,33 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
-
-inherit eutils
+EAPI=7
 
 DESCRIPTION="Secondary structure and solvent accessibility predictor"
 HOMEPAGE="https://rostlab.org/owiki/index.php/PROFphd_-_Secondary_Structure,_Solvent_Accessibility_and_Transmembrane_Helices_Prediction"
 SRC_URI="ftp://rostlab.org/profphd/${P}.tar.xz"
 
-SLOT="0"
 LICENSE="GPL-2"
+SLOT="0"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
 
 DEPEND="dev-lang/perl"
-RDEPEND="${DEPEND}
+RDEPEND="
+	${DEPEND}
 	dev-perl/librg-utils-perl
 	sci-libs/profnet
-	sci-libs/profphd-utils
-"
+	sci-libs/profphd-utils"
 
-src_prepare() {
-	sed \
-		-e '/ln -s/s:prof$:profphd:g' \
-		-i src/prof/Makefile || die
-	epatch "${FILESDIR}"/${PN}-1.0.39-perl.patch
-}
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.0.39-perl.patch
+	"${FILESDIR}"/${PN}-1.0.40-symlink.patch
+)
 
 src_compile() {
-	emake prefix="${EPREFIX}/usr"
+	emake prefix="${EPREFIX}"/usr
 }
 
 src_install() {
-	emake prefix="${EPREFIX}/usr" DESTDIR="${D}" install
+	emake prefix="${EPREFIX}"/usr DESTDIR="${D}" install
+	einstalldocs
 }