[gentoo-commits] proj/sci:master commit in: sci-biology/biobambam/

[gentoo-commits] proj/sci:master commit in: sci-biology/biobambam/

[Horea Christian]

commit:     7b77093ccf69b45396b77e47661ef62d9cabfdb9
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Sep 28 05:58:42 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Sep 28 05:58:42 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=7b77093c

sci-biology/biobambam: removed discontinued package

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/biobambam/biobambam-0.0.183.ebuild | 20 --------------------
 sci-biology/biobambam/metadata.xml             | 21 ---------------------
 2 files changed, 41 deletions(-)

diff --git a/sci-biology/biobambam/biobambam-0.0.183.ebuild b/sci-biology/biobambam/biobambam-0.0.183.ebuild
deleted file mode 100644
index 17a247d60..000000000
--- a/sci-biology/biobambam/biobambam-0.0.183.ebuild
+++ /dev/null
@@ -1,20 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-FULLVER=${PV}-release-20141208165400
-
-DESCRIPTION="Tools for bam file processing"
-HOMEPAGE="https://github.com/gt1/biobambam"
-SRC_URI="https://github.com/gt1/biobambam/archive/${FULLVER}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~x86"
-IUSE=""
-
-DEPEND="sci-libs/libmaus"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"/${PN}-${FULLVER}

diff --git a/sci-biology/biobambam/metadata.xml b/sci-biology/biobambam/metadata.xml
deleted file mode 100644
index 782a697ab..000000000
--- a/sci-biology/biobambam/metadata.xml
+++ /dev/null
@@ -1,21 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<longdescription lang="en">
-This package contains some tools for processing BAM files including
-
-bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name
-bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field
-bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column
-bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading.
-bamsort: reads BAM and writes BAM resorted by coordinates or query name
-bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
-</longdescription>
-	<upstream>
-		<remote-id type="github">gt1/biobambam</remote-id>
-	</upstream>
-</pkgmetadata>