From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 2173313835B for ; Sun, 27 Sep 2020 22:43:38 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 1968EE0819; Sun, 27 Sep 2020 22:43:37 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id F416BE0819 for ; Sun, 27 Sep 2020 22:43:36 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 93EDD340BF1 for ; Sun, 27 Sep 2020 22:43:35 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 103EB37F for ; Sun, 27 Sep 2020 22:43:34 +0000 (UTC) From: "Horea Christian" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Horea Christian" Message-ID: <1601246600.ae508e533a7c8d143dbee04f123f5e71b94c6b4a.chymera@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/Atlas/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/Atlas/Atlas-2005.ebuild sci-biology/Atlas/metadata.xml X-VCS-Directories: sci-biology/Atlas/ X-VCS-Committer: chymera X-VCS-Committer-Name: Horea Christian X-VCS-Revision: ae508e533a7c8d143dbee04f123f5e71b94c6b4a X-VCS-Branch: master Date: Sun, 27 Sep 2020 22:43:34 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 1f807671-def4-4efc-881e-6828438cfcb1 X-Archives-Hash: 1e65f06def30c6a83e382509daecd6ea commit: ae508e533a7c8d143dbee04f123f5e71b94c6b4a Author: Horea Christian chymera eu> AuthorDate: Sun Sep 27 22:34:55 2020 +0000 Commit: Horea Christian gmail com> CommitDate: Sun Sep 27 22:43:20 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ae508e53 sci-biology/Atlas: removed discontinued package Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-biology/Atlas/Atlas-2005.ebuild | 40 ------------------------------------- sci-biology/Atlas/metadata.xml | 12 ----------- 2 files changed, 52 deletions(-) diff --git a/sci-biology/Atlas/Atlas-2005.ebuild b/sci-biology/Atlas/Atlas-2005.ebuild deleted file mode 100644 index cfe09e0f7..000000000 --- a/sci-biology/Atlas/Atlas-2005.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs - -DESCRIPTION="Atlas Whole Genome Assembly Suite" -HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-whole-genome-assembly-suite" -SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas-src.tgz" -# https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas2005-linux.tgz - -LICENSE="ATLAS" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND="dev-libs/boost" -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/atlas-src/CBT - -src_prepare(){ - sed -e "s/^CC = .*/CC = $(tc-getCC)/" -e "s/^GCC = .*/GCC = $(tc-getCXX)/" -i Makefile || die - sed -e "s/^CC = .*/CC = $(tc-getCC)/" -e "s/^GCC = .*/GCC = $(tc-getCXX)/" -i ../CBTApps/Makefile.in || die - sed -e "s@^# CBT_DEVEL_USER = .*@CBT_DEVEL_USER = ${EPREFIX}/@" -i Makefile || die - sed -e "s@^# CBT_DEVEL_USER = .*@CBT_DEVEL_USER = ${EPREFIX}/@" -i Makefile.in || die - sed -e "s#^CBT_INSTALL_LIB = /home/hgsc/lib/#CBT_INSTALL_LIB = ${EPREFIX}/usr/lib/#" -i Makefile || die - sed -e "s#^CBT_INSTALL_LIB = /home/hgsc/lib/#CBT_INSTALL_LIB = ${EPREFIX}/usr/lib/#" -i Makefile.in || die - sed -e "s#^BOOST_DIR = .*#BOOST_DIR = ${EPREFIX}/usr/lib/#" -i Makefile || die - sed -e "s#^BOOST_DIR = .*#BOOST_DIR = ${EPREFIX}/usr/lib/#" -i Makefile.in || die - sed -e "s#^CXX = .*#CXX = $(tc-getCXX)#" -i gzstream/Makefile || die -} - -src_compile(){ - # install headers, bins and libs into CBT_DEVEL_USER, then compile apps - emake CBT_DEVEL_DIR="${WORKDIR}/atlas-src/CBT" CBT_INSTALL_DIR="${D}"/"${EPREFIX}" - cd ../CBTApps || die - emake CBT_DEVEL_DIR="${WORKDIR}/atlas-src/CBTApps" CBT_INSTALL_DIR="${D}"/"${EPREFIX}" -} diff --git a/sci-biology/Atlas/metadata.xml b/sci-biology/Atlas/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/Atlas/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ - - - - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - - sci-biology@gentoo.org - Gentoo Biology Project - -