[gentoo-commits] proj/sci:master commit in: sci-biology/Atlas/

["Horea Christian" <horea.christ@gmail.com>]

commit:     ae508e533a7c8d143dbee04f123f5e71b94c6b4a
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 22:34:55 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 22:43:20 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ae508e53

sci-biology/Atlas: removed discontinued package

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/Atlas/Atlas-2005.ebuild | 40 -------------------------------------
 sci-biology/Atlas/metadata.xml      | 12 -----------
 2 files changed, 52 deletions(-)

diff --git a/sci-biology/Atlas/Atlas-2005.ebuild b/sci-biology/Atlas/Atlas-2005.ebuild
deleted file mode 100644
index cfe09e0f7..000000000
--- a/sci-biology/Atlas/Atlas-2005.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit toolchain-funcs
-
-DESCRIPTION="Atlas Whole Genome Assembly Suite"
-HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-whole-genome-assembly-suite"
-SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas-src.tgz"
-# https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas2005-linux.tgz
-
-LICENSE="ATLAS"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="dev-libs/boost"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"/atlas-src/CBT
-
-src_prepare(){
-	sed -e "s/^CC = .*/CC = $(tc-getCC)/" -e "s/^GCC = .*/GCC = $(tc-getCXX)/" -i Makefile || die
-	sed -e "s/^CC = .*/CC = $(tc-getCC)/" -e "s/^GCC = .*/GCC = $(tc-getCXX)/" -i ../CBTApps/Makefile.in || die
-	sed -e "s@^# CBT_DEVEL_USER = .*@CBT_DEVEL_USER = ${EPREFIX}/@" -i Makefile || die
-	sed -e "s@^# CBT_DEVEL_USER = .*@CBT_DEVEL_USER = ${EPREFIX}/@" -i Makefile.in || die
-	sed -e "s#^CBT_INSTALL_LIB = /home/hgsc/lib/#CBT_INSTALL_LIB = ${EPREFIX}/usr/lib/#" -i Makefile || die
-	sed -e "s#^CBT_INSTALL_LIB = /home/hgsc/lib/#CBT_INSTALL_LIB = ${EPREFIX}/usr/lib/#" -i Makefile.in || die
-	sed -e "s#^BOOST_DIR = .*#BOOST_DIR = ${EPREFIX}/usr/lib/#" -i Makefile || die
-	sed -e "s#^BOOST_DIR = .*#BOOST_DIR = ${EPREFIX}/usr/lib/#" -i Makefile.in || die
-	sed -e "s#^CXX = .*#CXX = $(tc-getCXX)#" -i gzstream/Makefile || die
-}
-
-src_compile(){
-	# install headers, bins and libs into CBT_DEVEL_USER, then compile apps
-	emake CBT_DEVEL_DIR="${WORKDIR}/atlas-src/CBT" CBT_INSTALL_DIR="${D}"/"${EPREFIX}"
-	cd ../CBTApps || die
-	emake CBT_DEVEL_DIR="${WORKDIR}/atlas-src/CBTApps" CBT_INSTALL_DIR="${D}"/"${EPREFIX}"
-}

diff --git a/sci-biology/Atlas/metadata.xml b/sci-biology/Atlas/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/Atlas/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>