From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 078621381F3 for ; Sun, 27 Sep 2020 20:59:38 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 34A39E07DB; Sun, 27 Sep 2020 20:59:37 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 1510BE07DB for ; Sun, 27 Sep 2020 20:59:36 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id A360D335D58 for ; Sun, 27 Sep 2020 20:59:35 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 325E426 for ; Sun, 27 Sep 2020 20:59:34 +0000 (UTC) From: "Horea Christian" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Horea Christian" Message-ID: <1601240270.f8c18e63a7bd3240ee469df7638e037c8b3e6b64.chymera@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/pb-honey/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/pb-honey/metadata.xml sci-biology/pb-honey/pb-honey-14.1.15.ebuild X-VCS-Directories: sci-biology/pb-honey/ X-VCS-Committer: chymera X-VCS-Committer-Name: Horea Christian X-VCS-Revision: f8c18e63a7bd3240ee469df7638e037c8b3e6b64 X-VCS-Branch: master Date: Sun, 27 Sep 2020 20:59:34 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: e001fa68-cf4e-4c70-a344-2bfb97c889aa X-Archives-Hash: e3b19f1736b08a1dce41af197d4ca882 commit: f8c18e63a7bd3240ee469df7638e037c8b3e6b64 Author: Horea Christian chymera eu> AuthorDate: Sun Sep 27 20:57:50 2020 +0000 Commit: Horea Christian gmail com> CommitDate: Sun Sep 27 20:57:50 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f8c18e63 sci-biology/pb-honey: removed discontinued package Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-biology/pb-honey/metadata.xml | 15 --------------- sci-biology/pb-honey/pb-honey-14.1.15.ebuild | 25 ------------------------- 2 files changed, 40 deletions(-) diff --git a/sci-biology/pb-honey/metadata.xml b/sci-biology/pb-honey/metadata.xml deleted file mode 100644 index 1b533d8a5..000000000 --- a/sci-biology/pb-honey/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ - - - - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - - sci-biology@gentoo.org - Gentoo Biology Project - - - pb-jelly - - diff --git a/sci-biology/pb-honey/pb-honey-14.1.15.ebuild b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild deleted file mode 100644 index 1a4e10778..000000000 --- a/sci-biology/pb-honey/pb-honey-14.1.15.ebuild +++ /dev/null @@ -1,25 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Structural variant identification (SNV) using long reads (over 10kbp)" -HOMEPAGE="https://www.hgsc.bcm.edu/software/honey" -SRC_URI="http://sourceforge.net/projects/pb-jelly/files/PBHoney/PBHoney_14.1.15.tgz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND=" - sci-biology/blasr - sci-biology/pysam[${PYTHON_USEDEP}] - sci-biology/samtools:0[${PYTHON_USEDEP}] - dev-python/h5py[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}]" -RDEPEND="${DEPEND}"