From: "Horea Christian" <horea.christ@gmail.com>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/pb-honey/
Date: Sun, 27 Sep 2020 20:59:34 +0000 (UTC) [thread overview]
Message-ID: <1601240270.f8c18e63a7bd3240ee469df7638e037c8b3e6b64.chymera@gentoo> (raw)
commit: f8c18e63a7bd3240ee469df7638e037c8b3e6b64
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 20:57:50 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 20:57:50 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f8c18e63
sci-biology/pb-honey: removed discontinued package
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/pb-honey/metadata.xml | 15 ---------------
sci-biology/pb-honey/pb-honey-14.1.15.ebuild | 25 -------------------------
2 files changed, 40 deletions(-)
diff --git a/sci-biology/pb-honey/metadata.xml b/sci-biology/pb-honey/metadata.xml
deleted file mode 100644
index 1b533d8a5..000000000
--- a/sci-biology/pb-honey/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">pb-jelly</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-biology/pb-honey/pb-honey-14.1.15.ebuild b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild
deleted file mode 100644
index 1a4e10778..000000000
--- a/sci-biology/pb-honey/pb-honey-14.1.15.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Structural variant identification (SNV) using long reads (over 10kbp)"
-HOMEPAGE="https://www.hgsc.bcm.edu/software/honey"
-SRC_URI="http://sourceforge.net/projects/pb-jelly/files/PBHoney/PBHoney_14.1.15.tgz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="
- sci-biology/blasr
- sci-biology/pysam[${PYTHON_USEDEP}]
- sci-biology/samtools:0[${PYTHON_USEDEP}]
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]"
-RDEPEND="${DEPEND}"
next reply other threads:[~2020-09-27 20:59 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-09-27 20:59 Horea Christian [this message]
-- strict thread matches above, loose matches on Subject: below --
2017-01-29 14:20 [gentoo-commits] proj/sci:master commit in: sci-biology/pb-honey/ Justin Lecher
2015-05-02 16:29 Martin Mokrejs
2015-01-10 14:37 Justin Lecher
2015-01-07 21:59 Martin Mokrejs
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=1601240270.f8c18e63a7bd3240ee469df7638e037c8b3e6b64.chymera@gentoo \
--to=horea.christ@gmail.com \
--cc=gentoo-commits@lists.gentoo.org \
--cc=gentoo-dev@lists.gentoo.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox