From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id C1F52138359 for ; Sun, 27 Sep 2020 04:32:18 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id BB739E0831; Sun, 27 Sep 2020 04:32:17 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 92DE0E0831 for ; Sun, 27 Sep 2020 04:32:17 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id F2F3F33FD3F for ; Sun, 27 Sep 2020 04:32:15 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 68873339 for ; Sun, 27 Sep 2020 04:32:14 +0000 (UTC) From: "Horea Christian" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Horea Christian" Message-ID: <1601181076.0a98a3bfa820bf8ffd6d9258daa3a3469f15427a.chymera@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/discrover/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/discrover/discrover-1.6.0.ebuild sci-biology/discrover/discrover-9999.ebuild sci-biology/discrover/metadata.xml X-VCS-Directories: sci-biology/discrover/ X-VCS-Committer: chymera X-VCS-Committer-Name: Horea Christian X-VCS-Revision: 0a98a3bfa820bf8ffd6d9258daa3a3469f15427a X-VCS-Branch: master Date: Sun, 27 Sep 2020 04:32:14 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 916a0e02-cccd-4bb4-9d64-08e63bf751a5 X-Archives-Hash: a2ea4f7514e6268f2cd57df56c5c69b1 commit: 0a98a3bfa820bf8ffd6d9258daa3a3469f15427a Author: Horea Christian chymera eu> AuthorDate: Sun Sep 27 04:31:16 2020 +0000 Commit: Horea Christian gmail com> CommitDate: Sun Sep 27 04:31:16 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0a98a3bf sci-biology/discrover: removed deprecated package Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-biology/discrover/discrover-1.6.0.ebuild | 78 --------------------------- sci-biology/discrover/discrover-9999.ebuild | 79 ---------------------------- sci-biology/discrover/metadata.xml | 28 ---------- 3 files changed, 185 deletions(-) diff --git a/sci-biology/discrover/discrover-1.6.0.ebuild b/sci-biology/discrover/discrover-1.6.0.ebuild deleted file mode 100644 index 5840283fd..000000000 --- a/sci-biology/discrover/discrover-1.6.0.ebuild +++ /dev/null @@ -1,78 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 -inherit cmake-utils - -DESCRIPTION="A sequence motif discovery tool that uses discriminative learning" -HOMEPAGE="https://github.com/maaskola/discrover" -SRC_URI="https://github.com/maaskola/discrover/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-3+" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="+cairo dreme doc +lto misc_scripts +rmathlib tcmalloc" - -RDEPEND=" - dev-libs/boost - cairo? ( x11-libs/cairo ) - dreme? ( sci-biology/meme ) - rmathlib? ( dev-lang/R ) - tcmalloc? ( dev-util/google-perftools ) -" -DEPEND="${RDEPEND} - doc? ( - dev-texlive/texlive-latex - dev-texlive/texlive-latexextra - dev-texlive/texlive-latexrecommended - media-gfx/imagemagick - ) - lto? ( >=sys-devel/gcc-4.8:* ) -" -pkg_pretend() { - if use lto; then - if [[ $(gcc-major-version) -lt 4 ]] || ( [[ $(gcc-major-version) -eq 4 && $(gcc-minor-version) -lt 8 ]] ) ; then - eerror "Compilation with link-time optimization and GCC older than 4.8 is not supported." - eerror "Please either disable the USE flag 'lto' or use >=sys-devel/gcc-4.8." - die "Compiling with USE flag 'lto' is not supported with =sys-devel/gcc-4.8." - die "Compiling with USE flag 'lto' is not supported with - - - - jonas@maaskola.de - Jonas Maaskola - - - -Use Cairo for sequence logo plotting capabilities - - -Enable usage of DREME from the MEME package for seeding - - -Compile with link-time optimization (LTO) - - -Install miscellaneous scripts - - -Link to the standalone Rmathlib for statistical routines - - - - maaskola/discrover - -