* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-09-26 13:00 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-09-26 13:00 UTC (permalink / raw
To: gentoo-commits
commit: 09ee19145428210e56b80a4e0b67986f2aca6619
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sat Sep 26 13:00:31 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sat Sep 26 13:00:31 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=09ee1914
sci-biology/ants: EPREFIX instead of EROOT in src_*
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.3.1_p20191013.ebuild | 4 ++--
sci-biology/ants/ants-2.3.4.ebuild | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
index b47fa0cb2..aefec8e10 100644
--- a/sci-biology/ants/ants-2.3.1_p20191013.ebuild
+++ b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
@@ -47,13 +47,13 @@ src_unpack() {
src_configure() {
local mycmakeargs=(
-DUSE_SYSTEM_ITK=ON
- -DITK_DIR="${EROOT}/usr/include/ITK-5.0/"
+ -DITK_DIR="${EPREFIX}/usr/include/ITK-5.0/"
-DBUILD_TESTING="$(usex test ON OFF)"
-DUSE_VTK=$(usex vtk ON OFF)
-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
)
use vtk && mycmakeargs+=(
- -DVTK_DIR="${EROOT}/usr/include/vtk-8.1/"
+ -DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
)
use test && mycmakeargs+=(
-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
diff --git a/sci-biology/ants/ants-2.3.4.ebuild b/sci-biology/ants/ants-2.3.4.ebuild
index e00865149..2357036cd 100644
--- a/sci-biology/ants/ants-2.3.4.ebuild
+++ b/sci-biology/ants/ants-2.3.4.ebuild
@@ -50,14 +50,14 @@ src_unpack() {
src_configure() {
local mycmakeargs=(
-DUSE_SYSTEM_ITK=ON
- -DITK_DIR="${EROOT}/usr/include/ITK-5.1/"
+ -DITK_DIR="${EPREFIX}/usr/include/ITK-5.1/"
-DBUILD_TESTING="$(usex test ON OFF)"
-DUSE_VTK=$(usex vtk ON OFF)
-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
-DANTS_SNAPSHOT_VERSION:STRING=${PV}
)
use vtk && mycmakeargs+=(
- -DVTK_DIR="${EROOT}/usr/include/vtk-8.1/"
+ -DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
)
use test && mycmakeargs+=(
-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2023-05-02 12:52 Andrew Ammerlaan
0 siblings, 0 replies; 27+ messages in thread
From: Andrew Ammerlaan @ 2023-05-02 12:52 UTC (permalink / raw
To: gentoo-commits
commit: 573da60690ba0e001d582f50c745e4d82202912a
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May 2 12:52:17 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May 2 12:52:17 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=573da606
sci-biology/ants: drop 2.4.1-r1
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/ants/ants-2.4.1-r1.ebuild | 73 -----------------------------------
1 file changed, 73 deletions(-)
diff --git a/sci-biology/ants/ants-2.4.1-r1.ebuild b/sci-biology/ants/ants-2.4.1-r1.ebuild
deleted file mode 100644
index a2b9d637c..000000000
--- a/sci-biology/ants/ants-2.4.1-r1.ebuild
+++ /dev/null
@@ -1,73 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-CMAKE_MAKEFILE_GENERATOR="emake"
-inherit cmake
-
-MY_PN="ANTs"
-
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="https://stnava.github.io/ANTs/"
-SRC_URI="
- https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz
- test? (
- https://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
- )
-"
-S="${WORKDIR}/${MY_PN}-${PV}"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-IUSE="test vtk"
-RESTRICT="!test? ( test )"
-
-DEPEND="
- !vtk? ( =sci-libs/itk-5.2*[fftw,-vtkglue] )
- vtk? (
- =sci-libs/itk-5.2*[fftw,vtkglue]
- =sci-libs/vtk-9.1*
- )
-"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
- "${FILESDIR}/${P}-fix-compile.patch"
-)
-
-src_unpack() {
- default
- if use test; then
- mkdir -p "${S}/.ExternalData/SHA512" || die "Could not create test data directory."
- tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/SHA512/" > /dev/null || die "Could not unpack test data."
- fi
-}
-
-src_configure() {
- local mycmakeargs=(
- -DBUILD_EXAMPLES=OFF
- -DUSE_SYSTEM_ITK=ON
- -DITK_USE_SYSTEM_FFTW=ON
- -DITK_DIR="${EPREFIX}/usr/include/ITK-5.2/"
- -DBUILD_TESTING="$(usex test ON OFF)"
- -DUSE_VTK=$(usex vtk ON OFF)
- -DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
- )
- use vtk && mycmakeargs+=(
- -DVTK_DIR="${EPREFIX}/usr/include/vtk-9.1/"
- )
- cmake_src_configure
-}
-
-src_install() {
- BUILD_DIR="${WORKDIR}/${MY_PN}-${PV}_build/ANTS-build"
- cmake_src_install
- cd "${S}/Scripts" || die "scripts dir not found"
- dobin *.sh
- dodir /usr/$(get_libdir)/ants
- insinto "/usr/$(get_libdir)/ants"
- doins *
- doenvd "${FILESDIR}"/99ants
-}
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2023-04-06 7:15 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2023-04-06 7:15 UTC (permalink / raw
To: gentoo-commits
commit: de78db6789868a76de74b3c77b342b79862bf0ac
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Apr 6 07:15:21 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Apr 6 07:15:21 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=de78db67
sci-biology/ants: update SRC_URI
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.4.1-r1.ebuild | 2 +-
sci-biology/ants/ants-2.4.3.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ants/ants-2.4.1-r1.ebuild b/sci-biology/ants/ants-2.4.1-r1.ebuild
index 78938d194..a2b9d637c 100644
--- a/sci-biology/ants/ants-2.4.1-r1.ebuild
+++ b/sci-biology/ants/ants-2.4.1-r1.ebuild
@@ -13,7 +13,7 @@ HOMEPAGE="https://stnava.github.io/ANTs/"
SRC_URI="
https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz
test? (
- http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+ https://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
)
"
S="${WORKDIR}/${MY_PN}-${PV}"
diff --git a/sci-biology/ants/ants-2.4.3.ebuild b/sci-biology/ants/ants-2.4.3.ebuild
index 8ccad3c24..2dfa2a56d 100644
--- a/sci-biology/ants/ants-2.4.3.ebuild
+++ b/sci-biology/ants/ants-2.4.3.ebuild
@@ -13,7 +13,7 @@ HOMEPAGE="https://stnava.github.io/ANTs/"
SRC_URI="
https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz
test? (
- http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+ https://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
)
"
S="${WORKDIR}/${MY_PN}-${PV}"
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2023-04-04 21:20 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2023-04-04 21:20 UTC (permalink / raw
To: gentoo-commits
commit: a3ee59439b944fb12f7398f587ed6aac601fb96d
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Apr 4 21:20:07 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Apr 4 21:20:07 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a3ee5943
sci-biology/ants: update SRC_URI
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.4.1-r1.ebuild | 17 +++++++++++++++--
1 file changed, 15 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ants/ants-2.4.1-r1.ebuild b/sci-biology/ants/ants-2.4.1-r1.ebuild
index 70d5d8873..78938d194 100644
--- a/sci-biology/ants/ants-2.4.1-r1.ebuild
+++ b/sci-biology/ants/ants-2.4.1-r1.ebuild
@@ -10,14 +10,19 @@ MY_PN="ANTs"
DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
HOMEPAGE="https://stnava.github.io/ANTs/"
-SRC_URI="https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+SRC_URI="
+ https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz
+ test? (
+ http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+ )
+"
S="${WORKDIR}/${MY_PN}-${PV}"
SLOT="0"
LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
IUSE="test vtk"
-RESTRICT="test"
+RESTRICT="!test? ( test )"
DEPEND="
!vtk? ( =sci-libs/itk-5.2*[fftw,-vtkglue] )
@@ -32,6 +37,14 @@ PATCHES=(
"${FILESDIR}/${P}-fix-compile.patch"
)
+src_unpack() {
+ default
+ if use test; then
+ mkdir -p "${S}/.ExternalData/SHA512" || die "Could not create test data directory."
+ tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/SHA512/" > /dev/null || die "Could not unpack test data."
+ fi
+}
+
src_configure() {
local mycmakeargs=(
-DBUILD_EXAMPLES=OFF
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2023-04-04 5:04 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2023-04-04 5:04 UTC (permalink / raw
To: gentoo-commits
commit: e308a2697588847fd872c972a303f278b549595b
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Apr 4 05:03:56 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Apr 4 05:03:56 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e308a269
sci-biology/ants: add 2.4.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.4.3.ebuild | 69 ++++++++++++++++++++++++++++++++++++++
1 file changed, 69 insertions(+)
diff --git a/sci-biology/ants/ants-2.4.3.ebuild b/sci-biology/ants/ants-2.4.3.ebuild
new file mode 100644
index 000000000..8ccad3c24
--- /dev/null
+++ b/sci-biology/ants/ants-2.4.3.ebuild
@@ -0,0 +1,69 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+CMAKE_MAKEFILE_GENERATOR="emake"
+inherit cmake
+
+MY_PN="ANTs"
+
+DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
+HOMEPAGE="https://stnava.github.io/ANTs/"
+SRC_URI="
+ https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz
+ test? (
+ http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+ )
+"
+S="${WORKDIR}/${MY_PN}-${PV}"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+IUSE="test vtk"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+ !vtk? ( =sci-libs/itk-5.3*[fftw,-vtkglue] )
+ vtk? (
+ =sci-libs/itk-5.3*[fftw,vtkglue]
+ =sci-libs/vtk-9.2*
+ )
+"
+RDEPEND="${DEPEND}"
+
+src_unpack() {
+ default
+ if use test; then
+ mkdir -p "${S}/.ExternalData/SHA512" || die "Could not create test data directory."
+ tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/SHA512/" > /dev/null || die "Could not unpack test data."
+ fi
+}
+
+src_configure() {
+ local mycmakeargs=(
+ -DBUILD_EXAMPLES=OFF
+ -DUSE_SYSTEM_ITK=ON
+ -DITK_USE_SYSTEM_FFTW=ON
+ -DITK_DIR="${EPREFIX}/usr/include/ITK-5.3/"
+ -DBUILD_TESTING="$(usex test ON OFF)"
+ -DUSE_VTK=$(usex vtk ON OFF)
+ -DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
+ )
+ use vtk && mycmakeargs+=(
+ -DVTK_DIR="${EPREFIX}/usr/include/vtk-9.2/"
+ )
+ cmake_src_configure
+}
+
+src_install() {
+ BUILD_DIR="${WORKDIR}/${MY_PN}-${PV}_build/ANTS-build"
+ cmake_src_install
+ cd "${S}/Scripts" || die "scripts dir not found"
+ dobin *.sh
+ dodir /usr/$(get_libdir)/ants
+ insinto "/usr/$(get_libdir)/ants"
+ doins *
+ doenvd "${FILESDIR}"/99ants
+}
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2022-09-15 11:17 Andrew Ammerlaan
0 siblings, 0 replies; 27+ messages in thread
From: Andrew Ammerlaan @ 2022-09-15 11:17 UTC (permalink / raw
To: gentoo-commits
commit: b68bdff5d1fa625645b8a0b1dc16970292fe8da2
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 15 11:08:01 2022 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Thu Sep 15 11:08:01 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b68bdff5
Revert "sci-biology/ants: unkeyword 2.4.1 for ~amd64, ~x86"
This reverts commit c96283cc61aababf67741e437305f2f26bb837c8.
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/ants/ants-2.4.1.ebuild | 4 +---
1 file changed, 1 insertion(+), 3 deletions(-)
diff --git a/sci-biology/ants/ants-2.4.1.ebuild b/sci-biology/ants/ants-2.4.1.ebuild
index 59be784d6..feba81d2c 100644
--- a/sci-biology/ants/ants-2.4.1.ebuild
+++ b/sci-biology/ants/ants-2.4.1.ebuild
@@ -17,9 +17,7 @@ S="${WORKDIR}/${MY_PN}-${PV}"
SLOT="0"
LICENSE="BSD"
-# Fails on account of not finding a source file:
-# https://ppb.chymera.eu/e8dcb1.log
-KEYWORDS=""
+KEYWORDS="~amd64 ~x86"
IUSE="test vtk"
RESTRICT="test"
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2022-09-15 11:17 Andrew Ammerlaan
0 siblings, 0 replies; 27+ messages in thread
From: Andrew Ammerlaan @ 2022-09-15 11:17 UTC (permalink / raw
To: gentoo-commits
commit: 99c2387ed4924cbebc3ebcbdbcaeb7daeba65a3e
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 15 11:08:53 2022 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Thu Sep 15 11:08:53 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=99c2387e
Revert "sci-biology/ants: add 2.3.4"
This version is broken because it references versions of vtk that does not exist
and depends on vtk incorrectly
This reverts commit 4d36e47773d01a0d4d91d2eee5d2701dcdebe9d0.
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/ants/ants-2.3.4.ebuild | 78 --------------------------------------
1 file changed, 78 deletions(-)
diff --git a/sci-biology/ants/ants-2.3.4.ebuild b/sci-biology/ants/ants-2.3.4.ebuild
deleted file mode 100644
index 95eb6355b..000000000
--- a/sci-biology/ants/ants-2.3.4.ebuild
+++ /dev/null
@@ -1,78 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-CMAKE_MAKEFILE_GENERATOR="emake"
-
-inherit cmake
-
-MY_PN="ANTs"
-
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI="
- https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz
- test? (
- http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
- )
-"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-IUSE="test vtk"
-RESTRICT="!test? ( test )"
-
-DEPEND="
- vtk? (
- ~sci-libs/itk-5.1.0[vtkglue]
- sci-libs/vtk
- )
- !vtk? ( ~sci-libs/itk-5.1.0 )
-"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
- "${FILESDIR}/${P}-version.patch"
- "${FILESDIR}/${P}-libdir.patch"
-)
-
-S="${WORKDIR}/${MY_PN}-${PV}"
-
-src_unpack() {
- default
- if use test; then
- mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
- tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
- fi
-}
-
-src_configure() {
- local mycmakeargs=(
- -DUSE_SYSTEM_ITK=ON
- -DITK_DIR="${EPREFIX}/usr/include/ITK-5.1/"
- -DBUILD_TESTING="$(usex test ON OFF)"
- -DUSE_VTK=$(usex vtk ON OFF)
- -DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
- -DANTS_SNAPSHOT_VERSION:STRING=${PV}
- )
- use vtk && mycmakeargs+=(
- -DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
- )
- use test && mycmakeargs+=(
- -DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
- )
- cmake_src_configure
-}
-
-src_install() {
- BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
- cmake_src_install
- cd "${S}/Scripts" || die "scripts dir not found"
- dobin *.sh
- dodir /usr/$(get_libdir)/ants
- insinto "/usr/$(get_libdir)/ants"
- doins *
- doenvd "${FILESDIR}"/99ants
-}
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2022-09-15 7:57 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2022-09-15 7:57 UTC (permalink / raw
To: gentoo-commits
commit: c96283cc61aababf67741e437305f2f26bb837c8
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Sep 15 07:57:12 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Sep 15 07:57:12 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c96283cc
sci-biology/ants: unkeyword 2.4.1 for ~amd64, ~x86
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.4.1.ebuild | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/sci-biology/ants/ants-2.4.1.ebuild b/sci-biology/ants/ants-2.4.1.ebuild
index feba81d2c..59be784d6 100644
--- a/sci-biology/ants/ants-2.4.1.ebuild
+++ b/sci-biology/ants/ants-2.4.1.ebuild
@@ -17,7 +17,9 @@ S="${WORKDIR}/${MY_PN}-${PV}"
SLOT="0"
LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
+# Fails on account of not finding a source file:
+# https://ppb.chymera.eu/e8dcb1.log
+KEYWORDS=""
IUSE="test vtk"
RESTRICT="test"
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2022-09-15 7:03 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2022-09-15 7:03 UTC (permalink / raw
To: gentoo-commits
commit: 4d36e47773d01a0d4d91d2eee5d2701dcdebe9d0
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Sep 15 07:03:40 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Sep 15 07:03:40 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4d36e477
sci-biology/ants: add 2.3.4
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.3.4.ebuild | 78 ++++++++++++++++++++++++++++++++++++++
1 file changed, 78 insertions(+)
diff --git a/sci-biology/ants/ants-2.3.4.ebuild b/sci-biology/ants/ants-2.3.4.ebuild
new file mode 100644
index 000000000..95eb6355b
--- /dev/null
+++ b/sci-biology/ants/ants-2.3.4.ebuild
@@ -0,0 +1,78 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+CMAKE_MAKEFILE_GENERATOR="emake"
+
+inherit cmake
+
+MY_PN="ANTs"
+
+DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
+HOMEPAGE="http://stnava.github.io/ANTs/"
+SRC_URI="
+ https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz
+ test? (
+ http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+ )
+"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+IUSE="test vtk"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+ vtk? (
+ ~sci-libs/itk-5.1.0[vtkglue]
+ sci-libs/vtk
+ )
+ !vtk? ( ~sci-libs/itk-5.1.0 )
+"
+RDEPEND="${DEPEND}"
+
+PATCHES=(
+ "${FILESDIR}/${P}-version.patch"
+ "${FILESDIR}/${P}-libdir.patch"
+)
+
+S="${WORKDIR}/${MY_PN}-${PV}"
+
+src_unpack() {
+ default
+ if use test; then
+ mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
+ tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
+ fi
+}
+
+src_configure() {
+ local mycmakeargs=(
+ -DUSE_SYSTEM_ITK=ON
+ -DITK_DIR="${EPREFIX}/usr/include/ITK-5.1/"
+ -DBUILD_TESTING="$(usex test ON OFF)"
+ -DUSE_VTK=$(usex vtk ON OFF)
+ -DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
+ -DANTS_SNAPSHOT_VERSION:STRING=${PV}
+ )
+ use vtk && mycmakeargs+=(
+ -DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
+ )
+ use test && mycmakeargs+=(
+ -DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
+ )
+ cmake_src_configure
+}
+
+src_install() {
+ BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
+ cmake_src_install
+ cd "${S}/Scripts" || die "scripts dir not found"
+ dobin *.sh
+ dodir /usr/$(get_libdir)/ants
+ insinto "/usr/$(get_libdir)/ants"
+ doins *
+ doenvd "${FILESDIR}"/99ants
+}
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2022-08-31 10:56 Andrew Ammerlaan
0 siblings, 0 replies; 27+ messages in thread
From: Andrew Ammerlaan @ 2022-08-31 10:56 UTC (permalink / raw
To: gentoo-commits
commit: 7270f7d4cc28cda30144e8434dce425696390915
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Wed Aug 31 10:56:01 2022 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Wed Aug 31 10:56:01 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7270f7d4
sci-biology/ants: add 2.4.1, drop 2.3.4
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
.../ants/{ants-2.3.4.ebuild => ants-2.4.1.ebuild} | 39 +++++-----------------
1 file changed, 9 insertions(+), 30 deletions(-)
diff --git a/sci-biology/ants/ants-2.3.4.ebuild b/sci-biology/ants/ants-2.4.1.ebuild
similarity index 56%
rename from sci-biology/ants/ants-2.3.4.ebuild
rename to sci-biology/ants/ants-2.4.1.ebuild
index 95eb6355b..feba81d2c 100644
--- a/sci-biology/ants/ants-2.3.4.ebuild
+++ b/sci-biology/ants/ants-2.4.1.ebuild
@@ -1,67 +1,46 @@
# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=7
+EAPI=8
CMAKE_MAKEFILE_GENERATOR="emake"
-
inherit cmake
MY_PN="ANTs"
DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
+HOMEPAGE="https://stnava.github.io/ANTs/"
SRC_URI="
https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz
- test? (
- http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
- )
"
+S="${WORKDIR}/${MY_PN}-${PV}"
SLOT="0"
LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
IUSE="test vtk"
-RESTRICT="!test? ( test )"
+RESTRICT="test"
DEPEND="
+ =sci-libs/itk-5.2*
vtk? (
- ~sci-libs/itk-5.1.0[vtkglue]
- sci-libs/vtk
+ =sci-libs/itk-5.2*[vtkglue]
+ =sci-libs/vtk-9.1*
)
- !vtk? ( ~sci-libs/itk-5.1.0 )
"
RDEPEND="${DEPEND}"
-PATCHES=(
- "${FILESDIR}/${P}-version.patch"
- "${FILESDIR}/${P}-libdir.patch"
-)
-
-S="${WORKDIR}/${MY_PN}-${PV}"
-
-src_unpack() {
- default
- if use test; then
- mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
- tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
- fi
-}
-
src_configure() {
local mycmakeargs=(
-DUSE_SYSTEM_ITK=ON
- -DITK_DIR="${EPREFIX}/usr/include/ITK-5.1/"
+ -DITK_DIR="${EPREFIX}/usr/include/ITK-5.2/"
-DBUILD_TESTING="$(usex test ON OFF)"
-DUSE_VTK=$(usex vtk ON OFF)
-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
-DANTS_SNAPSHOT_VERSION:STRING=${PV}
)
use vtk && mycmakeargs+=(
- -DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
- )
- use test && mycmakeargs+=(
- -DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
+ -DVTK_DIR="${EPREFIX}/usr/include/vtk-9.1/"
)
cmake_src_configure
}
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-12-24 11:00 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-12-24 11:00 UTC (permalink / raw
To: gentoo-commits
commit: 6db8e528f559b5db1dd0999173170b44118802b3
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Dec 24 10:52:04 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Dec 24 10:52:04 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6db8e528
sci-biology/ants: conditional test restriction
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.3.4.ebuild | 1 +
1 file changed, 1 insertion(+)
diff --git a/sci-biology/ants/ants-2.3.4.ebuild b/sci-biology/ants/ants-2.3.4.ebuild
index 2357036cd..a457397a9 100644
--- a/sci-biology/ants/ants-2.3.4.ebuild
+++ b/sci-biology/ants/ants-2.3.4.ebuild
@@ -22,6 +22,7 @@ SLOT="0"
LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
IUSE="test vtk"
+RESTRICT="!test? ( test )"
DEPEND="
vtk? (
^ permalink raw reply related [flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-12-07 20:09 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-12-07 20:09 UTC (permalink / raw
To: gentoo-commits
commit: 3c90683a0ac9c21953cfa61ff00564dace91c4fa
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Dec 7 20:09:51 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Dec 7 20:09:51 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3c90683a
sci-biology/ants: removed version with unavailable distfiles
Package-Manager: Portage-3.0.11, Repoman-3.0.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.3.1_p20191013.ebuild | 72 ----------------------------
1 file changed, 72 deletions(-)
diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
deleted file mode 100644
index aefec8e10..000000000
--- a/sci-biology/ants/ants-2.3.1_p20191013.ebuild
+++ /dev/null
@@ -1,72 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-CMAKE_MAKEFILE_GENERATOR="emake"
-
-inherit cmake git-r3 multilib
-
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI="
- test? (
- http://chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
- )
-"
-EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
-EGIT_COMMIT="f78b2d4a382d3090230641b5ade5da28962dad04"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-IUSE="test vtk"
-
-DEPEND="
- vtk? (
- ~sci-libs/itk-5.0.1[vtkglue]
- sci-libs/vtk
- )
- !vtk? ( ~sci-libs/itk-5.0.1 )
-"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
- "${FILESDIR}/${P}-logic.patch"
- "${FILESDIR}/${P}-paths.patch"
-)
-
-src_unpack() {
- git-r3_src_unpack
- if use test; then
- mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
- tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
- fi
-}
-
-src_configure() {
- local mycmakeargs=(
- -DUSE_SYSTEM_ITK=ON
- -DITK_DIR="${EPREFIX}/usr/include/ITK-5.0/"
- -DBUILD_TESTING="$(usex test ON OFF)"
- -DUSE_VTK=$(usex vtk ON OFF)
- -DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
- )
- use vtk && mycmakeargs+=(
- -DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
- )
- use test && mycmakeargs+=(
- -DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
- )
- cmake-utils_src_configure
-}
-
-src_install() {
- BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
- cmake-utils_src_install
- cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
- dobin *.sh
- dodir /usr/$(get_libdir)/ants
- install -t "${D}"/usr/$(get_libdir)/ants * || die
- doenvd "${FILESDIR}"/99ants
-}
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-09-26 13:08 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-09-26 13:08 UTC (permalink / raw
To: gentoo-commits
commit: c9769d1af4a59e038f327066530b32126c4e69ed
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sat Sep 26 13:08:15 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sat Sep 26 13:08:15 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c9769d1a
sci-biology/ants: live package unusable w/o dynamic data
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-9999.ebuild | 70 ---------------------------------------
1 file changed, 70 deletions(-)
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
deleted file mode 100644
index 19d0a36db..000000000
--- a/sci-biology/ants/ants-9999.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-CMAKE_MAKEFILE_GENERATOR="emake"
-
-inherit cmake git-r3 multilib
-
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI="
- test? (
- http://chymera.eu/distfiles/ants_testdata-2.3.1_p20191013.tar.xz
- )
-"
-EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS=""
-IUSE="test vtk"
-
-DEPEND="
- vtk? (
- ~sci-libs/itk-5.0.1[vtkglue]
- sci-libs/vtk
- )
- !vtk? ( ~sci-libs/itk-5.0.1 )
-"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
- "${FILESDIR}/${PN}-2.3.1_p20191013-paths.patch"
-)
-
-src_unpack() {
- git-r3_src_unpack
- if use test; then
- mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
- tar xvf "${DISTDIR}/ants_testdata-2.3.1_p20191013.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
- fi
-}
-
-src_configure() {
- local mycmakeargs=(
- -DUSE_SYSTEM_ITK=ON
- -DITK_DIR="/usr/include/ITK-5.0/"
- -DBUILD_TESTING="$(usex test ON OFF)"
- -DUSE_VTK=$(usex vtk ON OFF)
- -DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
- )
- use vtk && mycmakeargs+=(
- -DVTK_DIR="/usr/include/vtk-8.1/"
- )
- use test && mycmakeargs+=(
- -DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
- )
- cmake-utils_src_configure
-}
-
-src_install() {
- BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
- cmake-utils_src_install
- cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
- dobin *.sh
- dodir /usr/$(get_libdir)/ants
- install -t "${D}"/usr/$(get_libdir)/ants * || die
- doenvd "${FILESDIR}"/99ants
-}
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-09-25 19:43 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-09-25 19:43 UTC (permalink / raw
To: gentoo-commits
commit: 1c74c639159b5edef966c34b62218c2d373aa7f1
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Sep 25 19:43:15 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Sep 25 19:43:15 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1c74c639
sci-biology/ants: cmake eclass migration
Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.3.1_p20191013.ebuild | 4 ++--
sci-biology/ants/ants-9999.ebuild | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
index ac8a76daf..b47fa0cb2 100644
--- a/sci-biology/ants/ants-2.3.1_p20191013.ebuild
+++ b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
CMAKE_MAKEFILE_GENERATOR="emake"
-inherit cmake-utils git-r3 multilib
+inherit cmake git-r3 multilib
DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
HOMEPAGE="http://stnava.github.io/ANTs/"
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index b759acb50..19d0a36db 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
CMAKE_MAKEFILE_GENERATOR="emake"
-inherit cmake-utils git-r3 multilib
+inherit cmake git-r3 multilib
DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
HOMEPAGE="http://stnava.github.io/ANTs/"
^ permalink raw reply related [flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-09-25 19:41 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-09-25 19:41 UTC (permalink / raw
To: gentoo-commits
commit: 6fa93869a8d0611b0db18a7307114ec3897083c7
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Sep 25 19:41:42 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Sep 25 19:41:42 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6fa93869
sci-biology/ants: removed old version
Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.3.1.ebuild | 29 -----------------------------
1 file changed, 29 deletions(-)
diff --git a/sci-biology/ants/ants-2.3.1.ebuild b/sci-biology/ants/ants-2.3.1.ebuild
deleted file mode 100644
index e48e7892a..000000000
--- a/sci-biology/ants/ants-2.3.1.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit cmake-utils multilib
-
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI="https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=">=dev-util/cmake-3.10.3"
-RDEPEND=""
-
-S="${WORKDIR}/ANTs-${PV}"
-
-src_install() {
- cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
- default
- cd "${S}/Scripts" || die "scripts dir not found"
- dobin *.sh
- dodir /usr/$(get_libdir)/ants
- install -t "${D}"usr/$(get_libdir)/ants *
- doenvd "${FILESDIR}"/99ants
-}
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2019-12-09 13:24 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2019-12-09 13:24 UTC (permalink / raw
To: gentoo-commits
commit: d7c83c94da820078b789db52bbcc9ac12d7538ef
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Dec 9 13:24:25 2019 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Dec 9 13:24:25 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d7c83c94
sci-biology/ants: prefix compatibility
Package-Manager: Portage-2.3.81, Repoman-2.3.18
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.3.1_p20191013.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
index 5dd2c8145..ac8a76daf 100644
--- a/sci-biology/ants/ants-2.3.1_p20191013.ebuild
+++ b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
@@ -47,13 +47,13 @@ src_unpack() {
src_configure() {
local mycmakeargs=(
-DUSE_SYSTEM_ITK=ON
- -DITK_DIR="/usr/include/ITK-5.0/"
+ -DITK_DIR="${EROOT}/usr/include/ITK-5.0/"
-DBUILD_TESTING="$(usex test ON OFF)"
-DUSE_VTK=$(usex vtk ON OFF)
-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
)
use vtk && mycmakeargs+=(
- -DVTK_DIR="/usr/include/vtk-8.1/"
+ -DVTK_DIR="${EROOT}/usr/include/vtk-8.1/"
)
use test && mycmakeargs+=(
-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2019-11-25 17:58 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2019-11-25 17:58 UTC (permalink / raw
To: gentoo-commits
commit: 5be1efe1c29a989f03b635bc179b5181150f45eb
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Nov 25 17:58:40 2019 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Nov 25 17:58:40 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5be1efe1
sci-biology/ants: EAPI bump and other live ebuild fixes
Package-Manager: Portage-2.3.79, Repoman-2.3.18
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-9999.ebuild | 60 +++++++++++++++++++++++++++++++++------
1 file changed, 51 insertions(+), 9 deletions(-)
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index da7514fca..b759acb50 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -1,28 +1,70 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
+
+CMAKE_MAKEFILE_GENERATOR="emake"
inherit cmake-utils git-r3 multilib
DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI=""
+SRC_URI="
+ test? (
+ http://chymera.eu/distfiles/ants_testdata-2.3.1_p20191013.tar.xz
+ )
+"
EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
SLOT="0"
LICENSE="BSD"
KEYWORDS=""
+IUSE="test vtk"
+
+DEPEND="
+ vtk? (
+ ~sci-libs/itk-5.0.1[vtkglue]
+ sci-libs/vtk
+ )
+ !vtk? ( ~sci-libs/itk-5.0.1 )
+"
+RDEPEND="${DEPEND}"
+
+PATCHES=(
+ "${FILESDIR}/${PN}-2.3.1_p20191013-paths.patch"
+)
-DEPEND=">=dev-util/cmake-3.10.3"
-RDEPEND=""
+src_unpack() {
+ git-r3_src_unpack
+ if use test; then
+ mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
+ tar xvf "${DISTDIR}/ants_testdata-2.3.1_p20191013.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
+ fi
+}
+
+src_configure() {
+ local mycmakeargs=(
+ -DUSE_SYSTEM_ITK=ON
+ -DITK_DIR="/usr/include/ITK-5.0/"
+ -DBUILD_TESTING="$(usex test ON OFF)"
+ -DUSE_VTK=$(usex vtk ON OFF)
+ -DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
+ )
+ use vtk && mycmakeargs+=(
+ -DVTK_DIR="/usr/include/vtk-8.1/"
+ )
+ use test && mycmakeargs+=(
+ -DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
+ )
+ cmake-utils_src_configure
+}
src_install() {
- cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
- default
- cd "${WORKDIR}/ANTs-${PV}/Scripts" || die "scripts dir not found"
+ BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
+ cmake-utils_src_install
+ cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
dobin *.sh
dodir /usr/$(get_libdir)/ants
- install -t "${D}"usr/$(get_libdir)/ants *
+ install -t "${D}"/usr/$(get_libdir)/ants * || die
doenvd "${FILESDIR}"/99ants
}
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2019-11-25 17:55 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2019-11-25 17:55 UTC (permalink / raw
To: gentoo-commits
commit: 135c9b37558224c81bdec906c505df3e62d0b608
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Nov 25 17:54:53 2019 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Nov 25 17:54:53 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=135c9b37
sci-biology/ants: version bump 2.3.1_p20191013
Package-Manager: Portage-2.3.79, Repoman-2.3.18
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/ants/ants-2.3.1_p20191013.ebuild | 72 ++++++++++++++++++++++++++++
sci-biology/ants/metadata.xml | 5 +-
2 files changed, 76 insertions(+), 1 deletion(-)
diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
new file mode 100644
index 000000000..5dd2c8145
--- /dev/null
+++ b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
@@ -0,0 +1,72 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+CMAKE_MAKEFILE_GENERATOR="emake"
+
+inherit cmake-utils git-r3 multilib
+
+DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
+HOMEPAGE="http://stnava.github.io/ANTs/"
+SRC_URI="
+ test? (
+ http://chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+ )
+"
+EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
+EGIT_COMMIT="f78b2d4a382d3090230641b5ade5da28962dad04"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+IUSE="test vtk"
+
+DEPEND="
+ vtk? (
+ ~sci-libs/itk-5.0.1[vtkglue]
+ sci-libs/vtk
+ )
+ !vtk? ( ~sci-libs/itk-5.0.1 )
+"
+RDEPEND="${DEPEND}"
+
+PATCHES=(
+ "${FILESDIR}/${P}-logic.patch"
+ "${FILESDIR}/${P}-paths.patch"
+)
+
+src_unpack() {
+ git-r3_src_unpack
+ if use test; then
+ mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
+ tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
+ fi
+}
+
+src_configure() {
+ local mycmakeargs=(
+ -DUSE_SYSTEM_ITK=ON
+ -DITK_DIR="/usr/include/ITK-5.0/"
+ -DBUILD_TESTING="$(usex test ON OFF)"
+ -DUSE_VTK=$(usex vtk ON OFF)
+ -DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
+ )
+ use vtk && mycmakeargs+=(
+ -DVTK_DIR="/usr/include/vtk-8.1/"
+ )
+ use test && mycmakeargs+=(
+ -DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
+ )
+ cmake-utils_src_configure
+}
+
+src_install() {
+ BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
+ cmake-utils_src_install
+ cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
+ dobin *.sh
+ dodir /usr/$(get_libdir)/ants
+ install -t "${D}"/usr/$(get_libdir)/ants * || die
+ doenvd "${FILESDIR}"/99ants
+}
diff --git a/sci-biology/ants/metadata.xml b/sci-biology/ants/metadata.xml
index 6d6b0d88a..87d2feb05 100644
--- a/sci-biology/ants/metadata.xml
+++ b/sci-biology/ants/metadata.xml
@@ -2,7 +2,7 @@
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="person">
- <email>horea.christ@gmail.com</email>
+ <email>chr@chymera.eu</email>
<name>Horea Christian</name>
</maintainer>
<maintainer type="project">
@@ -18,4 +18,7 @@
image analysis. ANTs depends on the Insight ToolKit (ITK), a widely used
medical image processing library to which ANTs developers contribute.
</longdescription>
+ <use>
+ <flag name="vtk">Optional support for a number of surface enabled tools (via sci-libs/vtk).</flag>
+ </use>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2018-06-26 0:25 Horea Christian
0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2018-06-26 0:25 UTC (permalink / raw
To: gentoo-commits
commit: 6582546f7efc4be481b58d7cfd055f02b5d9e1f1
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Mon Jun 25 21:38:20 2018 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jun 26 00:24:27 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6582546f
sci-biology/ants: Version bump and improvements
Package-Manager: Portage-2.3.40, Repoman-2.3.9
.../ants/{ants-9999.ebuild => ants-2.3.1.ebuild} | 17 +++++++++--------
sci-biology/ants/ants-9999.ebuild | 8 ++++----
sci-biology/ants/metadata.xml | 21 +++++++++++++--------
3 files changed, 26 insertions(+), 20 deletions(-)
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-2.3.1.ebuild
similarity index 63%
copy from sci-biology/ants/ants-9999.ebuild
copy to sci-biology/ants/ants-2.3.1.ebuild
index 3f5ce2ddb..e48e7892a 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-2.3.1.ebuild
@@ -1,26 +1,27 @@
# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=6
-inherit cmake-utils git-r3 multilib
+inherit cmake-utils multilib
DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
+SRC_URI="https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz"
SLOT="0"
LICENSE="BSD"
-KEYWORDS=""
+KEYWORDS="~amd64 ~x86"
-DEPEND=""
-RDEPEND="${DEPEND}"
+DEPEND=">=dev-util/cmake-3.10.3"
+RDEPEND=""
+
+S="${WORKDIR}/ANTs-${PV}"
src_install() {
cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
default
- cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
+ cd "${S}/Scripts" || die "scripts dir not found"
dobin *.sh
dodir /usr/$(get_libdir)/ants
install -t "${D}"usr/$(get_libdir)/ants *
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 3f5ce2ddb..da7514fca 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -1,7 +1,7 @@
# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=6
inherit cmake-utils git-r3 multilib
@@ -14,13 +14,13 @@ SLOT="0"
LICENSE="BSD"
KEYWORDS=""
-DEPEND=""
-RDEPEND="${DEPEND}"
+DEPEND=">=dev-util/cmake-3.10.3"
+RDEPEND=""
src_install() {
cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
default
- cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
+ cd "${WORKDIR}/ANTs-${PV}/Scripts" || die "scripts dir not found"
dobin *.sh
dodir /usr/$(get_libdir)/ants
install -t "${D}"usr/$(get_libdir)/ants *
diff --git a/sci-biology/ants/metadata.xml b/sci-biology/ants/metadata.xml
index e55eec26d..6d6b0d88a 100644
--- a/sci-biology/ants/metadata.xml
+++ b/sci-biology/ants/metadata.xml
@@ -1,16 +1,21 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
+ <maintainer type="person">
+ <email>horea.christ@gmail.com</email>
+ <name>Horea Christian</name>
+ </maintainer>
<maintainer type="project">
<email>sci@gentoo.org</email>
<name>Gentoo Science Project</name>
</maintainer>
- <longdescription>ANTs extracts information from complex datasets that include imaging (Word Cloud).
-Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional
-data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation
-toolkit. ANTsR is an emerging tool supporting standardized multimodality image analysis. ANTs depends
-on
-the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers
-contribute.
-</longdescription>
+ <longdescription>
+ ANTs extracts information from complex datasets that include imaging
+ (Word Cloud). Paired with ANTsR (answer), ANTs is useful for managing,
+ interpreting and visualizing multidimensional data. ANTs is popularly
+ considered a state-of-the-art medical image registration and segmentation
+ toolkit. ANTsR is an emerging tool supporting standardized multimodality
+ image analysis. ANTs depends on the Insight ToolKit (ITK), a widely used
+ medical image processing library to which ANTs developers contribute.
+ </longdescription>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2018-01-20 21:26 Martin Mokrejs
0 siblings, 0 replies; 27+ messages in thread
From: Martin Mokrejs @ 2018-01-20 21:26 UTC (permalink / raw
To: gentoo-commits
commit: e97bf0f185bc0db92f3b8c513a1c0f5700398be7
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Jan 20 21:25:16 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Jan 20 21:25:16 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e97bf0f1
sci-biology/ants: switch git:// to https://
Package-Manager: Portage-2.3.19, Repoman-2.3.6
sci-biology/ants/ants-9999.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 836b7012f..3f5ce2ddb 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -8,7 +8,7 @@ inherit cmake-utils git-r3 multilib
DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
HOMEPAGE="http://stnava.github.io/ANTs/"
SRC_URI=""
-EGIT_REPO_URI="git://github.com/stnava/ANTs.git"
+EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
SLOT="0"
LICENSE="BSD"
^ permalink raw reply related [flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2016-07-12 19:57 Marius Brehler
0 siblings, 0 replies; 27+ messages in thread
From: Marius Brehler @ 2016-07-12 19:57 UTC (permalink / raw
To: gentoo-commits
commit: f774ea13b8f237e9a975c49e7d0452ca998b47ba
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Fri Jun 24 17:36:16 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Fri Jun 24 17:36:16 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f774ea13
sci-biology/ants: removed dependency
Package-Manager: portage-2.3.0_rc1
sci-biology/ants/ants-9999.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index d3e39db..2565a5a 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -15,7 +15,7 @@ SLOT="0"
LICENSE="BSD"
KEYWORDS=""
-DEPEND="sci-libs/itk"
+DEPEND=""
RDEPEND="${DEPEND}"
src_install() {
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2016-05-20 14:03 Marius Brehler
0 siblings, 0 replies; 27+ messages in thread
From: Marius Brehler @ 2016-05-20 14:03 UTC (permalink / raw
To: gentoo-commits
commit: 17deecb9ee9f5033e0e965ae9cb9c110d794afdb
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Fri May 13 22:49:41 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Fri May 13 22:49:41 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=17deecb9
sci-biology/ants: install scripts
Package-Manager: portage-2.2.28
sci-biology/ants/ants-9999.ebuild | 2 ++
1 file changed, 2 insertions(+)
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index b034760..c8b6e64 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -22,6 +22,8 @@ src_install() {
cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
default
cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
+ exeinto /usr/bin
+ doexe *.sh
dodir /usr/$(get_libdir)/ants
install -t "${D}"usr/$(get_libdir)/ants *
}
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2016-05-20 14:03 Marius Brehler
0 siblings, 0 replies; 27+ messages in thread
From: Marius Brehler @ 2016-05-20 14:03 UTC (permalink / raw
To: gentoo-commits
commit: d2d862999e44d5e9a378f0efe3098190df788fa7
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue May 17 00:50:05 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Tue May 17 00:50:05 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d2d86299
sci-biology/ants: using dobin instead of doexe
Package-Manager: portage-2.2.28
sci-biology/ants/ants-9999.ebuild | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 628d926..d3e39db 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -22,8 +22,7 @@ src_install() {
cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
default
cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
- exeinto /usr/bin
- doexe *.sh
+ dobin *.sh
dodir /usr/$(get_libdir)/ants
install -t "${D}"usr/$(get_libdir)/ants *
doenvd "${FILESDIR}"/99ants
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2015-08-04 9:16 Justin Lecher
0 siblings, 0 replies; 27+ messages in thread
From: Justin Lecher @ 2015-08-04 9:16 UTC (permalink / raw
To: gentoo-commits
commit: bcbbaedb7b5080ea2db18ce64b81e41a30a4bc4e
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Mon Jul 27 22:06:32 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jul 27 22:06:32 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bcbbaedb
using multilib eclass
Package-Manager: portage-2.2.20
sci-biology/ants/ChangeLog | 3 +++
sci-biology/ants/ants-9999.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/sci-biology/ants/ChangeLog b/sci-biology/ants/ChangeLog
index 6e50bf0..2080d9a 100644
--- a/sci-biology/ants/ChangeLog
+++ b/sci-biology/ants/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 27 Jul 2015; <chymera@gentoo.org> ants-9999.ebuild:
+ using multilib eclass
+
26 Jul 2015; <chymera@gentoo.org> ants-9999.ebuild:
specifying lib dir adequaltely for multilib setups
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 58b6ae8..20a1945 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -4,7 +4,7 @@
EAPI=5
-inherit cmake-utils git-r3
+inherit cmake-utils git-r3 multilib
DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
HOMEPAGE="http://stnava.github.io/ANTs/"
^ permalink raw reply related [flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2015-08-04 9:16 Justin Lecher
0 siblings, 0 replies; 27+ messages in thread
From: Justin Lecher @ 2015-08-04 9:16 UTC (permalink / raw
To: gentoo-commits
commit: 226e379726954f95fb6bb356f122d8608c6a985d
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Tue Jul 28 11:08:52 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jul 28 11:08:52 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=226e3797
replaced explicit command by default call
Package-Manager: portage-2.2.20
sci-biology/ants/ChangeLog | 3 +++
sci-biology/ants/ants-9999.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/sci-biology/ants/ChangeLog b/sci-biology/ants/ChangeLog
index 2080d9a..74eed39 100644
--- a/sci-biology/ants/ChangeLog
+++ b/sci-biology/ants/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 28 Jul 2015; <chymera@gentoo.org> ants-9999.ebuild:
+ replaced explicit command by default call
+
27 Jul 2015; <chymera@gentoo.org> ants-9999.ebuild:
using multilib eclass
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 20a1945..3ebea86 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -20,7 +20,7 @@ RDEPEND="${DEPEND}"
src_install() {
cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
- emake DESTDIR="${D}" install
+ default
cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
dodir /usr/$(get_libdir)/ants
install -t "${D}"usr/$(get_libdir)/ants *
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2015-08-04 9:16 Justin Lecher
0 siblings, 0 replies; 27+ messages in thread
From: Justin Lecher @ 2015-08-04 9:16 UTC (permalink / raw
To: gentoo-commits
commit: 90b839eb6d0e6b198ca35142bfffb67e54333a3c
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Sun Jul 26 20:57:25 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jul 26 20:57:25 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=90b839eb
specifying lib dir adequaltely for multilib setups
Package-Manager: portage-2.2.20
sci-biology/ants/ChangeLog | 3 +++
sci-biology/ants/ants-9999.ebuild | 4 ++--
2 files changed, 5 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ants/ChangeLog b/sci-biology/ants/ChangeLog
index b46385b..6e50bf0 100644
--- a/sci-biology/ants/ChangeLog
+++ b/sci-biology/ants/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 26 Jul 2015; <chymera@gentoo.org> ants-9999.ebuild:
+ specifying lib dir adequaltely for multilib setups
+
*ants-9999 (26 Jul 2015)
26 Jul 2015; <chymera@gentoo.org> +ants-9999.ebuild, +metadata.xml:
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 0623c22..58b6ae8 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -22,6 +22,6 @@ src_install() {
cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
emake DESTDIR="${D}" install
cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
- dodir /usr/lib/ants
- install -t "${D}"usr/lib/ants *
+ dodir /usr/$(get_libdir)/ants
+ install -t "${D}"usr/$(get_libdir)/ants *
}
^ permalink raw reply related [flat|nested] 27+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2015-08-04 9:16 Justin Lecher
0 siblings, 0 replies; 27+ messages in thread
From: Justin Lecher @ 2015-08-04 9:16 UTC (permalink / raw
To: gentoo-commits
commit: a8c7c67dce51ddbc37e1bce45ad732953de1d75a
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Sun Jul 26 20:50:32 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jul 26 20:50:32 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a8c7c67d
new ebuild
Package-Manager: portage-2.2.20
sci-biology/ants/ChangeLog | 8 ++++++++
sci-biology/ants/ants-9999.ebuild | 27 +++++++++++++++++++++++++++
sci-biology/ants/metadata.xml | 13 +++++++++++++
3 files changed, 48 insertions(+)
diff --git a/sci-biology/ants/ChangeLog b/sci-biology/ants/ChangeLog
new file mode 100644
index 0000000..b46385b
--- /dev/null
+++ b/sci-biology/ants/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-biology/ants
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*ants-9999 (26 Jul 2015)
+
+ 26 Jul 2015; <chymera@gentoo.org> +ants-9999.ebuild, +metadata.xml:
+ new ebuild
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
new file mode 100644
index 0000000..0623c22
--- /dev/null
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit cmake-utils git-r3
+
+DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
+HOMEPAGE="http://stnava.github.io/ANTs/"
+SRC_URI=""
+EGIT_REPO_URI="git://github.com/stnava/ANTs.git"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS=""
+
+DEPEND="sci-libs/itk"
+RDEPEND="${DEPEND}"
+
+src_install() {
+ cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
+ emake DESTDIR="${D}" install
+ cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
+ dodir /usr/lib/ants
+ install -t "${D}"usr/lib/ants *
+}
diff --git a/sci-biology/ants/metadata.xml b/sci-biology/ants/metadata.xml
new file mode 100644
index 0000000..0358403
--- /dev/null
+++ b/sci-biology/ants/metadata.xml
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci</herd>
+ <longdescription>ANTs extracts information from complex datasets that include imaging (Word Cloud).
+Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional
+data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation
+toolkit. ANTsR is an emerging tool supporting standardized multimodality image analysis. ANTs depends
+on
+the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers
+contribute.
+ </longdescription>
+</pkgmetadata>
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2015-08-04 9:16 Justin Lecher
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2015-08-04 9:16 Justin Lecher
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