* [gentoo-commits] proj/sci:master commit in: sci-biology/pysurfer/files/, sci-biology/pysurfer/
@ 2013-11-16 17:03 Guillaume Horel
0 siblings, 0 replies; 4+ messages in thread
From: Guillaume Horel @ 2013-11-16 17:03 UTC (permalink / raw
To: gentoo-commits
commit: e7b05cf915e75ca3c156b8d619529eed4bb4baf0
Author: Martin Luessi <mluessi <AT> nmr <DOT> mgh <DOT> harvard <DOT> edu>
AuthorDate: Sun Nov 10 22:02:57 2013 +0000
Commit: Guillaume Horel <guillaume.horel <AT> gmail <DOT> com>
CommitDate: Sun Nov 10 22:02:57 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e7b05cf9
FIX: don't import surfer in septup.py
---
.../pysurfer/files/0.4-headless_build.patch | 22 ++++++++++++++++++++++
sci-biology/pysurfer/pysurfer-0.4.ebuild | 6 ++++++
2 files changed, 28 insertions(+)
diff --git a/sci-biology/pysurfer/files/0.4-headless_build.patch b/sci-biology/pysurfer/files/0.4-headless_build.patch
new file mode 100644
index 0000000..0cebc11
--- /dev/null
+++ b/sci-biology/pysurfer/files/0.4-headless_build.patch
@@ -0,0 +1,22 @@
+diff --git a/setup.py b/setup.py
+index c8681c2..41c21a5 100644
+--- a/setup.py
++++ b/setup.py
+@@ -10,8 +10,6 @@ import os
+ # deal with MPL sandbox violations during easy_install
+ os.environ['MPLCONFIGDIR'] = '.'
+
+-import surfer
+-
+ DISTNAME = 'pysurfer'
+ DESCRIPTION = descr
+ LONG_DESCRIPTION = descr
+@@ -20,7 +18,7 @@ MAINTAINER_EMAIL = 'mwaskom@stanford.edu'
+ URL = 'http://pysurfer.github.com'
+ LICENSE = 'BSD (3-clause)'
+ DOWNLOAD_URL = 'https://github.com/nipy/PySurfer'
+-VERSION = surfer.__version__
++VERSION = "0.4"
+
+ import setuptools # we are using a setuptools namespace
+ from numpy.distutils.core import setup
diff --git a/sci-biology/pysurfer/pysurfer-0.4.ebuild b/sci-biology/pysurfer/pysurfer-0.4.ebuild
index 9f53ce5..4bb5dbe 100644
--- a/sci-biology/pysurfer/pysurfer-0.4.ebuild
+++ b/sci-biology/pysurfer/pysurfer-0.4.ebuild
@@ -20,3 +20,9 @@ RDEPEND="sci-visualization/mayavi"
DEPEND=""
S="${WORKDIR}/PySurfer-${PV}"
+
+src_unpack() {
+ unpack ${A}
+ cd "${S}"
+ epatch "${FILESDIR}/${PV}-headless_build.patch"
+}
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/pysurfer/files/, sci-biology/pysurfer/
@ 2015-10-13 6:29 Marius Brehler
0 siblings, 0 replies; 4+ messages in thread
From: Marius Brehler @ 2015-10-13 6:29 UTC (permalink / raw
To: gentoo-commits
commit: 1fe4adf95e6f9a95ce786ffa3e00be78f2d1c26b
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Mon Oct 12 14:45:46 2015 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Mon Oct 12 14:45:46 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1fe4adf9
sci-biology/pysurfer: updated patch
Package-Manager: portage-2.2.23
sci-biology/pysurfer/ChangeLog | 3 +++
sci-biology/pysurfer/files/0.6-headless_build.patch | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/sci-biology/pysurfer/ChangeLog b/sci-biology/pysurfer/ChangeLog
index 063f15e..5b247e9 100644
--- a/sci-biology/pysurfer/ChangeLog
+++ b/sci-biology/pysurfer/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 12 Oct 2015; Horea Christian <h.chr@mail.ru> files/0.6-headless_build.patch:
+ sci-biology/pysurfer: updated patch
+
30 Sep 2015; Horea Christian <h.chr@mail.ru> +files/0.6-headless_build.patch:
added correspondng patch for =sci-biology/pysurfer-0.6
diff --git a/sci-biology/pysurfer/files/0.6-headless_build.patch b/sci-biology/pysurfer/files/0.6-headless_build.patch
index 63e4c2c..eeadf3c 100644
--- a/sci-biology/pysurfer/files/0.6-headless_build.patch
+++ b/sci-biology/pysurfer/files/0.6-headless_build.patch
@@ -15,7 +15,7 @@ index c8681c2..41c21a5 100644
URL = 'http://pysurfer.github.com'
LICENSE = 'BSD (3-clause)'
DOWNLOAD_URL = 'https://github.com/nipy/PySurfer'
--VERSION = surfer.__version__
+-VERSION = version
+VERSION = "0.6"
import setuptools # we are using a setuptools namespace
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/pysurfer/files/, sci-biology/pysurfer/
@ 2015-10-15 17:10 Justin Lecher
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2015-10-15 17:10 UTC (permalink / raw
To: gentoo-commits
commit: 992bb3dbdddb273f6a4105ff2ea9ee4c304593cc
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Tue Oct 13 07:59:06 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Oct 13 07:59:56 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=992bb3db
sci-biology/pysurfer: removed deprecated patch section
Package-Manager: portage-2.2.23
sci-biology/pysurfer/ChangeLog | 3 +++
sci-biology/pysurfer/files/0.6-headless_build.patch | 9 ---------
2 files changed, 3 insertions(+), 9 deletions(-)
diff --git a/sci-biology/pysurfer/ChangeLog b/sci-biology/pysurfer/ChangeLog
index 5b247e9..8ae3d3a 100644
--- a/sci-biology/pysurfer/ChangeLog
+++ b/sci-biology/pysurfer/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 13 Oct 2015; Horea Christian <h.chr@mail.ru> files/0.6-headless_build.patch:
+ sci-biology/pysurfer: removed deprecated patch section
+
12 Oct 2015; Horea Christian <h.chr@mail.ru> files/0.6-headless_build.patch:
sci-biology/pysurfer: updated patch
diff --git a/sci-biology/pysurfer/files/0.6-headless_build.patch b/sci-biology/pysurfer/files/0.6-headless_build.patch
index eeadf3c..e75def0 100644
--- a/sci-biology/pysurfer/files/0.6-headless_build.patch
+++ b/sci-biology/pysurfer/files/0.6-headless_build.patch
@@ -2,15 +2,6 @@ diff --git a/setup.py b/setup.py
index c8681c2..41c21a5 100644
--- a/setup.py
+++ b/setup.py
-@@ -10,8 +10,6 @@ import os
- # deal with MPL sandbox violations during easy_install
- os.environ['MPLCONFIGDIR'] = '.'
-
--import surfer
--
- DISTNAME = 'pysurfer'
- DESCRIPTION = descr
- LONG_DESCRIPTION = descr
@@ -20,7 +18,7 @@ MAINTAINER_EMAIL = 'mwaskom@stanford.edu'
URL = 'http://pysurfer.github.com'
LICENSE = 'BSD (3-clause)'
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/pysurfer/files/, sci-biology/pysurfer/
@ 2020-09-26 10:58 Horea Christian
0 siblings, 0 replies; 4+ messages in thread
From: Horea Christian @ 2020-09-26 10:58 UTC (permalink / raw
To: gentoo-commits
commit: aa675ec6d7c4b11100ce9c509e3347685e9c66ad
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sat Sep 26 10:56:40 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sat Sep 26 10:56:40 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=aa675ec6
sci-biology/pysurfer: removed package with missing dep (mayavi)
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
.../pysurfer/files/0.4-headless_build.patch | 22 -----------------
.../pysurfer/files/0.6-headless_build.patch | 13 ----------
sci-biology/pysurfer/metadata.xml | 11 ---------
sci-biology/pysurfer/pysurfer-0.4.ebuild | 28 ----------------------
sci-biology/pysurfer/pysurfer-0.6.ebuild | 28 ----------------------
sci-biology/pysurfer/pysurfer-9999.ebuild | 26 --------------------
6 files changed, 128 deletions(-)
diff --git a/sci-biology/pysurfer/files/0.4-headless_build.patch b/sci-biology/pysurfer/files/0.4-headless_build.patch
deleted file mode 100644
index 0cebc112a..000000000
--- a/sci-biology/pysurfer/files/0.4-headless_build.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-diff --git a/setup.py b/setup.py
-index c8681c2..41c21a5 100644
---- a/setup.py
-+++ b/setup.py
-@@ -10,8 +10,6 @@ import os
- # deal with MPL sandbox violations during easy_install
- os.environ['MPLCONFIGDIR'] = '.'
-
--import surfer
--
- DISTNAME = 'pysurfer'
- DESCRIPTION = descr
- LONG_DESCRIPTION = descr
-@@ -20,7 +18,7 @@ MAINTAINER_EMAIL = 'mwaskom@stanford.edu'
- URL = 'http://pysurfer.github.com'
- LICENSE = 'BSD (3-clause)'
- DOWNLOAD_URL = 'https://github.com/nipy/PySurfer'
--VERSION = surfer.__version__
-+VERSION = "0.4"
-
- import setuptools # we are using a setuptools namespace
- from numpy.distutils.core import setup
diff --git a/sci-biology/pysurfer/files/0.6-headless_build.patch b/sci-biology/pysurfer/files/0.6-headless_build.patch
deleted file mode 100644
index e75def095..000000000
--- a/sci-biology/pysurfer/files/0.6-headless_build.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/setup.py b/setup.py
-index c8681c2..41c21a5 100644
---- a/setup.py
-+++ b/setup.py
-@@ -20,7 +18,7 @@ MAINTAINER_EMAIL = 'mwaskom@stanford.edu'
- URL = 'http://pysurfer.github.com'
- LICENSE = 'BSD (3-clause)'
- DOWNLOAD_URL = 'https://github.com/nipy/PySurfer'
--VERSION = version
-+VERSION = "0.6"
-
- import setuptools # we are using a setuptools namespace
- from numpy.distutils.core import setup
diff --git a/sci-biology/pysurfer/metadata.xml b/sci-biology/pysurfer/metadata.xml
deleted file mode 100644
index e4897b79c..000000000
--- a/sci-biology/pysurfer/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <upstream>
- <remote-id type="github">nipy/PySurfer</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-biology/pysurfer/pysurfer-0.4.ebuild b/sci-biology/pysurfer/pysurfer-0.4.ebuild
deleted file mode 100644
index 848a43cca..000000000
--- a/sci-biology/pysurfer/pysurfer-0.4.ebuild
+++ /dev/null
@@ -1,28 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Python based program for visualization of data from Freesurfer"
-HOMEPAGE="http://pysurfer.github.com"
-SRC_URI="https://github.com/nipy/PySurfer/archive/${PV}.zip -> ${P}.zip"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- sci-visualization/mayavi[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]"
-DEPEND=""
-
-S="${WORKDIR}/PySurfer-${PV}"
-
-PATCHES=( "${FILESDIR}/${PV}-headless_build.patch" )
diff --git a/sci-biology/pysurfer/pysurfer-0.6.ebuild b/sci-biology/pysurfer/pysurfer-0.6.ebuild
deleted file mode 100644
index 848a43cca..000000000
--- a/sci-biology/pysurfer/pysurfer-0.6.ebuild
+++ /dev/null
@@ -1,28 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Python based program for visualization of data from Freesurfer"
-HOMEPAGE="http://pysurfer.github.com"
-SRC_URI="https://github.com/nipy/PySurfer/archive/${PV}.zip -> ${P}.zip"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- sci-visualization/mayavi[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]"
-DEPEND=""
-
-S="${WORKDIR}/PySurfer-${PV}"
-
-PATCHES=( "${FILESDIR}/${PV}-headless_build.patch" )
diff --git a/sci-biology/pysurfer/pysurfer-9999.ebuild b/sci-biology/pysurfer/pysurfer-9999.ebuild
deleted file mode 100644
index 5bf1ee96f..000000000
--- a/sci-biology/pysurfer/pysurfer-9999.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 git-r3
-
-DESCRIPTION="Python based program for visualization of data from Freesurfer"
-HOMEPAGE="http://pysurfer.github.com"
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/nipy/PySurfer.git"
-
-LICENSE="BSD"
-SLOT="0"
-
-RDEPEND="
- sci-visualization/mayavi[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]"
-DEPEND=""
-
-S="${WORKDIR}/PySurfer-${PV}"
^ permalink raw reply related [flat|nested] 4+ messages in thread
end of thread, other threads:[~2020-09-26 10:58 UTC | newest]
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