From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 9C3BB138359 for ; Sat, 26 Sep 2020 09:42:05 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 96B60E0806; Sat, 26 Sep 2020 09:42:04 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 73B1FE0806 for ; Sat, 26 Sep 2020 09:42:04 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 32A8C340CFE for ; Sat, 26 Sep 2020 09:42:03 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id B7ADB373 for ; Sat, 26 Sep 2020 09:42:01 +0000 (UTC) From: "Horea Christian" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Horea Christian" Message-ID: <1601113259.39df6200aad813e9488a21850b8b7b954b521dbd.chymera@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/biopieces/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/biopieces/biopieces-0.51.ebuild sci-biology/biopieces/biopieces-9999.ebuild sci-biology/biopieces/metadata.xml X-VCS-Directories: sci-biology/biopieces/ X-VCS-Committer: chymera X-VCS-Committer-Name: Horea Christian X-VCS-Revision: 39df6200aad813e9488a21850b8b7b954b521dbd X-VCS-Branch: master Date: Sat, 26 Sep 2020 09:42:01 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 839f2dcd-79d6-41a5-9863-b3821bfaa865 X-Archives-Hash: 7d5add8df5d28bf7504dc96dabb99748 commit: 39df6200aad813e9488a21850b8b7b954b521dbd Author: Horea Christian chymera eu> AuthorDate: Sat Sep 26 09:40:59 2020 +0000 Commit: Horea Christian gmail com> CommitDate: Sat Sep 26 09:40:59 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=39df6200 sci-biology/biopieces: Removed package with deprecated dep Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-biology/biopieces/biopieces-0.51.ebuild | 71 ----------------------------- sci-biology/biopieces/biopieces-9999.ebuild | 71 ----------------------------- sci-biology/biopieces/metadata.xml | 12 ----- 3 files changed, 154 deletions(-) diff --git a/sci-biology/biopieces/biopieces-0.51.ebuild b/sci-biology/biopieces/biopieces-0.51.ebuild deleted file mode 100644 index 03a9d78cc..000000000 --- a/sci-biology/biopieces/biopieces-0.51.ebuild +++ /dev/null @@ -1,71 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -USE_RUBY="ruby22 ruby23 ruby24" - -if [ "$PV" == "9999" ]; then - ESVN_REPO_URI="http://biopieces.googlecode.com/svn/trunk" - KEYWORDS="" - inherit subversion -else - SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-${PV}.sh" - KEYWORDS="" -fi - -inherit ruby-fakegem python-single-r1 - -DESCRIPTION="Trim adaptors, plot read lengths, qualities, map reads and submit to GenBank" -HOMEPAGE="http://code.google.com/p/biopieces" -SRC_URI="" - -LICENSE="GPL-2" -SLOT="0" -IUSE="test" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -# Ruby terminal-table ? - -CDEPEND="${PYTHON_DEPS} - >=dev-lang/perl-5.8 - dev-perl/libwww-perl - dev-perl/Bit-Vector - dev-perl/Carp-Clan - dev-perl/Class-Inspector - dev-perl/DBD-mysql - dev-perl/DBI - dev-perl/HTML-Parser - dev-perl/Inline - dev-perl/Parse-RecDescent - dev-perl/SOAP-Lite - dev-perl/SVG - dev-perl/TermReadKey - dev-perl/URI - dev-perl/XML-Parser - virtual/perl-version - virtual/perl-DB_File - virtual/perl-Time-HiRes" - -DEPEND="${CDEPEND}" - -ruby_add_bdepend "dev-ruby/RubyInline" -ruby_add_rdepend "dev-ruby/gnuplot dev-ruby/narray" - -# sci-biology/vmatch # http://www.vmatch.de/ # fecth restrict -# sci-biology/usearch-bin # http://www.drive5.com/usearch/ # fecth restrict - -RDEPEND="${CDEPEND} - sci-biology/ncbi-tools - sci-biology/muscle - sci-biology/mummer - sci-biology/blat - sci-biology/bowtie - sci-biology/bwa - sci-biology/velvet - sci-biology/Ray - sci-biology/scan_for_matches - sci-biology/idba" diff --git a/sci-biology/biopieces/biopieces-9999.ebuild b/sci-biology/biopieces/biopieces-9999.ebuild deleted file mode 100644 index 03a9d78cc..000000000 --- a/sci-biology/biopieces/biopieces-9999.ebuild +++ /dev/null @@ -1,71 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -USE_RUBY="ruby22 ruby23 ruby24" - -if [ "$PV" == "9999" ]; then - ESVN_REPO_URI="http://biopieces.googlecode.com/svn/trunk" - KEYWORDS="" - inherit subversion -else - SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-${PV}.sh" - KEYWORDS="" -fi - -inherit ruby-fakegem python-single-r1 - -DESCRIPTION="Trim adaptors, plot read lengths, qualities, map reads and submit to GenBank" -HOMEPAGE="http://code.google.com/p/biopieces" -SRC_URI="" - -LICENSE="GPL-2" -SLOT="0" -IUSE="test" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -# Ruby terminal-table ? - -CDEPEND="${PYTHON_DEPS} - >=dev-lang/perl-5.8 - dev-perl/libwww-perl - dev-perl/Bit-Vector - dev-perl/Carp-Clan - dev-perl/Class-Inspector - dev-perl/DBD-mysql - dev-perl/DBI - dev-perl/HTML-Parser - dev-perl/Inline - dev-perl/Parse-RecDescent - dev-perl/SOAP-Lite - dev-perl/SVG - dev-perl/TermReadKey - dev-perl/URI - dev-perl/XML-Parser - virtual/perl-version - virtual/perl-DB_File - virtual/perl-Time-HiRes" - -DEPEND="${CDEPEND}" - -ruby_add_bdepend "dev-ruby/RubyInline" -ruby_add_rdepend "dev-ruby/gnuplot dev-ruby/narray" - -# sci-biology/vmatch # http://www.vmatch.de/ # fecth restrict -# sci-biology/usearch-bin # http://www.drive5.com/usearch/ # fecth restrict - -RDEPEND="${CDEPEND} - sci-biology/ncbi-tools - sci-biology/muscle - sci-biology/mummer - sci-biology/blat - sci-biology/bowtie - sci-biology/bwa - sci-biology/velvet - sci-biology/Ray - sci-biology/scan_for_matches - sci-biology/idba" diff --git a/sci-biology/biopieces/metadata.xml b/sci-biology/biopieces/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/biopieces/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ - - - - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - - sci-biology@gentoo.org - Gentoo Biology Project - -