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* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2015-08-04  9:16 Justin Lecher
  0 siblings, 0 replies; 27+ messages in thread
From: Justin Lecher @ 2015-08-04  9:16 UTC (permalink / raw
  To: gentoo-commits

commit:     90b839eb6d0e6b198ca35142bfffb67e54333a3c
Author:     Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Sun Jul 26 20:57:25 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jul 26 20:57:25 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=90b839eb

specifying lib dir adequaltely for multilib setups

Package-Manager: portage-2.2.20

 sci-biology/ants/ChangeLog        | 3 +++
 sci-biology/ants/ants-9999.ebuild | 4 ++--
 2 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/sci-biology/ants/ChangeLog b/sci-biology/ants/ChangeLog
index b46385b..6e50bf0 100644
--- a/sci-biology/ants/ChangeLog
+++ b/sci-biology/ants/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  26 Jul 2015;  <chymera@gentoo.org> ants-9999.ebuild:
+  specifying lib dir adequaltely for multilib setups
+
 *ants-9999 (26 Jul 2015)
 
   26 Jul 2015;  <chymera@gentoo.org> +ants-9999.ebuild, +metadata.xml:

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 0623c22..58b6ae8 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -22,6 +22,6 @@ src_install() {
 	cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
 	emake DESTDIR="${D}" install
 	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
-	dodir /usr/lib/ants
-	install -t "${D}"usr/lib/ants *
+	dodir /usr/$(get_libdir)/ants
+	install -t "${D}"usr/$(get_libdir)/ants *
 }


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2015-08-04  9:16 Justin Lecher
  0 siblings, 0 replies; 27+ messages in thread
From: Justin Lecher @ 2015-08-04  9:16 UTC (permalink / raw
  To: gentoo-commits

commit:     a8c7c67dce51ddbc37e1bce45ad732953de1d75a
Author:     Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Sun Jul 26 20:50:32 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jul 26 20:50:32 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a8c7c67d

new ebuild

Package-Manager: portage-2.2.20

 sci-biology/ants/ChangeLog        |  8 ++++++++
 sci-biology/ants/ants-9999.ebuild | 27 +++++++++++++++++++++++++++
 sci-biology/ants/metadata.xml     | 13 +++++++++++++
 3 files changed, 48 insertions(+)

diff --git a/sci-biology/ants/ChangeLog b/sci-biology/ants/ChangeLog
new file mode 100644
index 0000000..b46385b
--- /dev/null
+++ b/sci-biology/ants/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-biology/ants
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*ants-9999 (26 Jul 2015)
+
+  26 Jul 2015;  <chymera@gentoo.org> +ants-9999.ebuild, +metadata.xml:
+  new ebuild

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
new file mode 100644
index 0000000..0623c22
--- /dev/null
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit cmake-utils git-r3
+
+DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
+HOMEPAGE="http://stnava.github.io/ANTs/"
+SRC_URI=""
+EGIT_REPO_URI="git://github.com/stnava/ANTs.git"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS=""
+
+DEPEND="sci-libs/itk"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
+	emake DESTDIR="${D}" install
+	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
+	dodir /usr/lib/ants
+	install -t "${D}"usr/lib/ants *
+}

diff --git a/sci-biology/ants/metadata.xml b/sci-biology/ants/metadata.xml
new file mode 100644
index 0000000..0358403
--- /dev/null
+++ b/sci-biology/ants/metadata.xml
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci</herd>
+  <longdescription>ANTs extracts information from complex datasets that include imaging (Word Cloud). 
+Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional 
+data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation 
+toolkit. ANTsR is an emerging tool supporting standardized multimodality image analysis. ANTs depends 
+on 
+the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers 
+contribute.
+  </longdescription>
+</pkgmetadata>


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2015-08-04  9:16 Justin Lecher
  0 siblings, 0 replies; 27+ messages in thread
From: Justin Lecher @ 2015-08-04  9:16 UTC (permalink / raw
  To: gentoo-commits

commit:     bcbbaedb7b5080ea2db18ce64b81e41a30a4bc4e
Author:     Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Mon Jul 27 22:06:32 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jul 27 22:06:32 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=bcbbaedb

using multilib eclass

Package-Manager: portage-2.2.20

 sci-biology/ants/ChangeLog        | 3 +++
 sci-biology/ants/ants-9999.ebuild | 2 +-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/sci-biology/ants/ChangeLog b/sci-biology/ants/ChangeLog
index 6e50bf0..2080d9a 100644
--- a/sci-biology/ants/ChangeLog
+++ b/sci-biology/ants/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  27 Jul 2015;  <chymera@gentoo.org> ants-9999.ebuild:
+  using multilib eclass
+
   26 Jul 2015;  <chymera@gentoo.org> ants-9999.ebuild:
   specifying lib dir adequaltely for multilib setups
 

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 58b6ae8..20a1945 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=5
 
-inherit cmake-utils git-r3
+inherit cmake-utils git-r3 multilib
 
 DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
 HOMEPAGE="http://stnava.github.io/ANTs/"


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2015-08-04  9:16 Justin Lecher
  0 siblings, 0 replies; 27+ messages in thread
From: Justin Lecher @ 2015-08-04  9:16 UTC (permalink / raw
  To: gentoo-commits

commit:     226e379726954f95fb6bb356f122d8608c6a985d
Author:     Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Tue Jul 28 11:08:52 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jul 28 11:08:52 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=226e3797

replaced explicit command by default call

Package-Manager: portage-2.2.20

 sci-biology/ants/ChangeLog        | 3 +++
 sci-biology/ants/ants-9999.ebuild | 2 +-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/sci-biology/ants/ChangeLog b/sci-biology/ants/ChangeLog
index 2080d9a..74eed39 100644
--- a/sci-biology/ants/ChangeLog
+++ b/sci-biology/ants/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  28 Jul 2015;  <chymera@gentoo.org> ants-9999.ebuild:
+  replaced explicit command by default call
+
   27 Jul 2015;  <chymera@gentoo.org> ants-9999.ebuild:
   using multilib eclass
 

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 20a1945..3ebea86 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -20,7 +20,7 @@ RDEPEND="${DEPEND}"
 
 src_install() {
 	cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
-	emake DESTDIR="${D}" install
+	default
 	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
 	dodir /usr/$(get_libdir)/ants
 	install -t "${D}"usr/$(get_libdir)/ants *


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2016-05-20 14:03 Marius Brehler
  0 siblings, 0 replies; 27+ messages in thread
From: Marius Brehler @ 2016-05-20 14:03 UTC (permalink / raw
  To: gentoo-commits

commit:     17deecb9ee9f5033e0e965ae9cb9c110d794afdb
Author:     Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Fri May 13 22:49:41 2016 +0000
Commit:     Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Fri May 13 22:49:41 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=17deecb9

sci-biology/ants: install scripts

Package-Manager: portage-2.2.28

 sci-biology/ants/ants-9999.ebuild | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index b034760..c8b6e64 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -22,6 +22,8 @@ src_install() {
 	cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
 	default
 	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
+	exeinto /usr/bin
+	doexe *.sh
 	dodir /usr/$(get_libdir)/ants
 	install -t "${D}"usr/$(get_libdir)/ants *
 }


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2016-05-20 14:03 Marius Brehler
  0 siblings, 0 replies; 27+ messages in thread
From: Marius Brehler @ 2016-05-20 14:03 UTC (permalink / raw
  To: gentoo-commits

commit:     d2d862999e44d5e9a378f0efe3098190df788fa7
Author:     Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue May 17 00:50:05 2016 +0000
Commit:     Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Tue May 17 00:50:05 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d2d86299

sci-biology/ants: using dobin instead of doexe

Package-Manager: portage-2.2.28

 sci-biology/ants/ants-9999.ebuild | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 628d926..d3e39db 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -22,8 +22,7 @@ src_install() {
 	cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
 	default
 	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
-	exeinto /usr/bin
-	doexe *.sh
+	dobin *.sh
 	dodir /usr/$(get_libdir)/ants
 	install -t "${D}"usr/$(get_libdir)/ants *
 	doenvd "${FILESDIR}"/99ants


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2016-07-12 19:57 Marius Brehler
  0 siblings, 0 replies; 27+ messages in thread
From: Marius Brehler @ 2016-07-12 19:57 UTC (permalink / raw
  To: gentoo-commits

commit:     f774ea13b8f237e9a975c49e7d0452ca998b47ba
Author:     Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Fri Jun 24 17:36:16 2016 +0000
Commit:     Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Fri Jun 24 17:36:16 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f774ea13

sci-biology/ants: removed dependency

Package-Manager: portage-2.3.0_rc1

 sci-biology/ants/ants-9999.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index d3e39db..2565a5a 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -15,7 +15,7 @@ SLOT="0"
 LICENSE="BSD"
 KEYWORDS=""
 
-DEPEND="sci-libs/itk"
+DEPEND=""
 RDEPEND="${DEPEND}"
 
 src_install() {


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2018-01-20 21:26 Martin Mokrejs
  0 siblings, 0 replies; 27+ messages in thread
From: Martin Mokrejs @ 2018-01-20 21:26 UTC (permalink / raw
  To: gentoo-commits

commit:     e97bf0f185bc0db92f3b8c513a1c0f5700398be7
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Jan 20 21:25:16 2018 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Jan 20 21:25:16 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e97bf0f1

sci-biology/ants: switch git:// to https://

Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/ants/ants-9999.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 836b7012f..3f5ce2ddb 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -8,7 +8,7 @@ inherit cmake-utils git-r3 multilib
 DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
 HOMEPAGE="http://stnava.github.io/ANTs/"
 SRC_URI=""
-EGIT_REPO_URI="git://github.com/stnava/ANTs.git"
+EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
 
 SLOT="0"
 LICENSE="BSD"


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2018-06-26  0:25 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2018-06-26  0:25 UTC (permalink / raw
  To: gentoo-commits

commit:     6582546f7efc4be481b58d7cfd055f02b5d9e1f1
Author:     Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Mon Jun 25 21:38:20 2018 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jun 26 00:24:27 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6582546f

sci-biology/ants: Version bump and improvements

Package-Manager: Portage-2.3.40, Repoman-2.3.9

 .../ants/{ants-9999.ebuild => ants-2.3.1.ebuild}    | 17 +++++++++--------
 sci-biology/ants/ants-9999.ebuild                   |  8 ++++----
 sci-biology/ants/metadata.xml                       | 21 +++++++++++++--------
 3 files changed, 26 insertions(+), 20 deletions(-)

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-2.3.1.ebuild
similarity index 63%
copy from sci-biology/ants/ants-9999.ebuild
copy to sci-biology/ants/ants-2.3.1.ebuild
index 3f5ce2ddb..e48e7892a 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-2.3.1.ebuild
@@ -1,26 +1,27 @@
 # Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=6
 
-inherit cmake-utils git-r3 multilib
+inherit cmake-utils multilib
 
 DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
 HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
+SRC_URI="https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz"
 
 SLOT="0"
 LICENSE="BSD"
-KEYWORDS=""
+KEYWORDS="~amd64 ~x86"
 
-DEPEND=""
-RDEPEND="${DEPEND}"
+DEPEND=">=dev-util/cmake-3.10.3"
+RDEPEND=""
+
+S="${WORKDIR}/ANTs-${PV}"
 
 src_install() {
 	cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
 	default
-	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
+	cd "${S}/Scripts" || die "scripts dir not found"
 	dobin *.sh
 	dodir /usr/$(get_libdir)/ants
 	install -t "${D}"usr/$(get_libdir)/ants *

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 3f5ce2ddb..da7514fca 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -1,7 +1,7 @@
 # Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=6
 
 inherit cmake-utils git-r3 multilib
 
@@ -14,13 +14,13 @@ SLOT="0"
 LICENSE="BSD"
 KEYWORDS=""
 
-DEPEND=""
-RDEPEND="${DEPEND}"
+DEPEND=">=dev-util/cmake-3.10.3"
+RDEPEND=""
 
 src_install() {
 	cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
 	default
-	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
+	cd "${WORKDIR}/ANTs-${PV}/Scripts" || die "scripts dir not found"
 	dobin *.sh
 	dodir /usr/$(get_libdir)/ants
 	install -t "${D}"usr/$(get_libdir)/ants *

diff --git a/sci-biology/ants/metadata.xml b/sci-biology/ants/metadata.xml
index e55eec26d..6d6b0d88a 100644
--- a/sci-biology/ants/metadata.xml
+++ b/sci-biology/ants/metadata.xml
@@ -1,16 +1,21 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
+	<maintainer type="person">
+		<email>horea.christ@gmail.com</email>
+		<name>Horea Christian</name>
+	</maintainer>
 	<maintainer type="project">
 		<email>sci@gentoo.org</email>
 		<name>Gentoo Science Project</name>
 	</maintainer>
-	<longdescription>ANTs extracts information from complex datasets that include imaging (Word Cloud). 
-Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional 
-data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation 
-toolkit. ANTsR is an emerging tool supporting standardized multimodality image analysis. ANTs depends 
-on 
-the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers 
-contribute.
-</longdescription>
+	<longdescription>
+		ANTs extracts information from complex datasets that include imaging
+		(Word Cloud). Paired with ANTsR (answer), ANTs is useful for managing,
+		interpreting and visualizing multidimensional data. ANTs is popularly
+		considered a state-of-the-art medical image registration and segmentation
+		toolkit. ANTsR is an emerging tool supporting standardized multimodality
+		image analysis. ANTs depends on the Insight ToolKit (ITK), a widely used
+		medical image processing library to which ANTs developers contribute.
+	</longdescription>
 </pkgmetadata>


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2019-11-25 17:55 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2019-11-25 17:55 UTC (permalink / raw
  To: gentoo-commits

commit:     135c9b37558224c81bdec906c505df3e62d0b608
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Nov 25 17:54:53 2019 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Nov 25 17:54:53 2019 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=135c9b37

sci-biology/ants: version bump 2.3.1_p20191013

Package-Manager: Portage-2.3.79, Repoman-2.3.18
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.3.1_p20191013.ebuild | 72 ++++++++++++++++++++++++++++
 sci-biology/ants/metadata.xml                |  5 +-
 2 files changed, 76 insertions(+), 1 deletion(-)

diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
new file mode 100644
index 000000000..5dd2c8145
--- /dev/null
+++ b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
@@ -0,0 +1,72 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+CMAKE_MAKEFILE_GENERATOR="emake"
+
+inherit cmake-utils git-r3 multilib
+
+DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
+HOMEPAGE="http://stnava.github.io/ANTs/"
+SRC_URI="
+	test? (
+		http://chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+	)
+"
+EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
+EGIT_COMMIT="f78b2d4a382d3090230641b5ade5da28962dad04"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+IUSE="test vtk"
+
+DEPEND="
+	vtk? (
+		~sci-libs/itk-5.0.1[vtkglue]
+		sci-libs/vtk
+	)
+	!vtk? (	~sci-libs/itk-5.0.1 )
+"
+RDEPEND="${DEPEND}"
+
+PATCHES=(
+	"${FILESDIR}/${P}-logic.patch"
+	"${FILESDIR}/${P}-paths.patch"
+)
+
+src_unpack() {
+	git-r3_src_unpack
+	if use test; then
+		mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
+		tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
+	fi
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DUSE_SYSTEM_ITK=ON
+		-DITK_DIR="/usr/include/ITK-5.0/"
+		-DBUILD_TESTING="$(usex test ON OFF)"
+		-DUSE_VTK=$(usex vtk ON OFF)
+		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
+	)
+	use vtk && mycmakeargs+=(
+		-DVTK_DIR="/usr/include/vtk-8.1/"
+	)
+	use test && mycmakeargs+=(
+		-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
+	)
+	cmake-utils_src_configure
+}
+
+src_install() {
+	BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
+	cmake-utils_src_install
+	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
+	dobin *.sh
+	dodir /usr/$(get_libdir)/ants
+	install -t "${D}"/usr/$(get_libdir)/ants * || die
+	doenvd "${FILESDIR}"/99ants
+}

diff --git a/sci-biology/ants/metadata.xml b/sci-biology/ants/metadata.xml
index 6d6b0d88a..87d2feb05 100644
--- a/sci-biology/ants/metadata.xml
+++ b/sci-biology/ants/metadata.xml
@@ -2,7 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<maintainer type="person">
-		<email>horea.christ@gmail.com</email>
+		<email>chr@chymera.eu</email>
 		<name>Horea Christian</name>
 	</maintainer>
 	<maintainer type="project">
@@ -18,4 +18,7 @@
 		image analysis. ANTs depends on the Insight ToolKit (ITK), a widely used
 		medical image processing library to which ANTs developers contribute.
 	</longdescription>
+	<use>
+		<flag name="vtk">Optional support for a number of surface enabled tools (via sci-libs/vtk).</flag>
+	</use>
 </pkgmetadata>


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2019-11-25 17:58 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2019-11-25 17:58 UTC (permalink / raw
  To: gentoo-commits

commit:     5be1efe1c29a989f03b635bc179b5181150f45eb
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Nov 25 17:58:40 2019 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Nov 25 17:58:40 2019 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5be1efe1

sci-biology/ants: EAPI bump and other live ebuild fixes

Package-Manager: Portage-2.3.79, Repoman-2.3.18
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-9999.ebuild | 60 +++++++++++++++++++++++++++++++++------
 1 file changed, 51 insertions(+), 9 deletions(-)

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index da7514fca..b759acb50 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -1,28 +1,70 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
+
+CMAKE_MAKEFILE_GENERATOR="emake"
 
 inherit cmake-utils git-r3 multilib
 
 DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
 HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI=""
+SRC_URI="
+	test? (
+		http://chymera.eu/distfiles/ants_testdata-2.3.1_p20191013.tar.xz
+	)
+"
 EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
 
 SLOT="0"
 LICENSE="BSD"
 KEYWORDS=""
+IUSE="test vtk"
+
+DEPEND="
+	vtk? (
+		~sci-libs/itk-5.0.1[vtkglue]
+		sci-libs/vtk
+	)
+	!vtk? (	~sci-libs/itk-5.0.1 )
+"
+RDEPEND="${DEPEND}"
+
+PATCHES=(
+	"${FILESDIR}/${PN}-2.3.1_p20191013-paths.patch"
+)
 
-DEPEND=">=dev-util/cmake-3.10.3"
-RDEPEND=""
+src_unpack() {
+	git-r3_src_unpack
+	if use test; then
+		mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
+		tar xvf "${DISTDIR}/ants_testdata-2.3.1_p20191013.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
+	fi
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DUSE_SYSTEM_ITK=ON
+		-DITK_DIR="/usr/include/ITK-5.0/"
+		-DBUILD_TESTING="$(usex test ON OFF)"
+		-DUSE_VTK=$(usex vtk ON OFF)
+		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
+	)
+	use vtk && mycmakeargs+=(
+		-DVTK_DIR="/usr/include/vtk-8.1/"
+	)
+	use test && mycmakeargs+=(
+		-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
+	)
+	cmake-utils_src_configure
+}
 
 src_install() {
-	cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
-	default
-	cd "${WORKDIR}/ANTs-${PV}/Scripts" || die "scripts dir not found"
+	BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
+	cmake-utils_src_install
+	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
 	dobin *.sh
 	dodir /usr/$(get_libdir)/ants
-	install -t "${D}"usr/$(get_libdir)/ants *
+	install -t "${D}"/usr/$(get_libdir)/ants * || die
 	doenvd "${FILESDIR}"/99ants
 }


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2019-12-09 13:24 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2019-12-09 13:24 UTC (permalink / raw
  To: gentoo-commits

commit:     d7c83c94da820078b789db52bbcc9ac12d7538ef
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Dec  9 13:24:25 2019 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Dec  9 13:24:25 2019 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d7c83c94

sci-biology/ants: prefix compatibility

Package-Manager: Portage-2.3.81, Repoman-2.3.18
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.3.1_p20191013.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
index 5dd2c8145..ac8a76daf 100644
--- a/sci-biology/ants/ants-2.3.1_p20191013.ebuild
+++ b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
@@ -47,13 +47,13 @@ src_unpack() {
 src_configure() {
 	local mycmakeargs=(
 		-DUSE_SYSTEM_ITK=ON
-		-DITK_DIR="/usr/include/ITK-5.0/"
+		-DITK_DIR="${EROOT}/usr/include/ITK-5.0/"
 		-DBUILD_TESTING="$(usex test ON OFF)"
 		-DUSE_VTK=$(usex vtk ON OFF)
 		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
 	)
 	use vtk && mycmakeargs+=(
-		-DVTK_DIR="/usr/include/vtk-8.1/"
+		-DVTK_DIR="${EROOT}/usr/include/vtk-8.1/"
 	)
 	use test && mycmakeargs+=(
 		-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-09-25 19:41 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-09-25 19:41 UTC (permalink / raw
  To: gentoo-commits

commit:     6fa93869a8d0611b0db18a7307114ec3897083c7
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Sep 25 19:41:42 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Sep 25 19:41:42 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6fa93869

sci-biology/ants: removed old version

Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.3.1.ebuild | 29 -----------------------------
 1 file changed, 29 deletions(-)

diff --git a/sci-biology/ants/ants-2.3.1.ebuild b/sci-biology/ants/ants-2.3.1.ebuild
deleted file mode 100644
index e48e7892a..000000000
--- a/sci-biology/ants/ants-2.3.1.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit cmake-utils multilib
-
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI="https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=">=dev-util/cmake-3.10.3"
-RDEPEND=""
-
-S="${WORKDIR}/ANTs-${PV}"
-
-src_install() {
-	cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
-	default
-	cd "${S}/Scripts" || die "scripts dir not found"
-	dobin *.sh
-	dodir /usr/$(get_libdir)/ants
-	install -t "${D}"usr/$(get_libdir)/ants *
-	doenvd "${FILESDIR}"/99ants
-}


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-09-25 19:43 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-09-25 19:43 UTC (permalink / raw
  To: gentoo-commits

commit:     1c74c639159b5edef966c34b62218c2d373aa7f1
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Sep 25 19:43:15 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Sep 25 19:43:15 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1c74c639

sci-biology/ants: cmake eclass migration

Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.3.1_p20191013.ebuild | 4 ++--
 sci-biology/ants/ants-9999.ebuild            | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
index ac8a76daf..b47fa0cb2 100644
--- a/sci-biology/ants/ants-2.3.1_p20191013.ebuild
+++ b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
 CMAKE_MAKEFILE_GENERATOR="emake"
 
-inherit cmake-utils git-r3 multilib
+inherit cmake git-r3 multilib
 
 DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
 HOMEPAGE="http://stnava.github.io/ANTs/"

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index b759acb50..19d0a36db 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
 CMAKE_MAKEFILE_GENERATOR="emake"
 
-inherit cmake-utils git-r3 multilib
+inherit cmake git-r3 multilib
 
 DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
 HOMEPAGE="http://stnava.github.io/ANTs/"


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-09-26 13:00 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-09-26 13:00 UTC (permalink / raw
  To: gentoo-commits

commit:     09ee19145428210e56b80a4e0b67986f2aca6619
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sat Sep 26 13:00:31 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sat Sep 26 13:00:31 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=09ee1914

sci-biology/ants: EPREFIX instead of EROOT in src_*

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.3.1_p20191013.ebuild | 4 ++--
 sci-biology/ants/ants-2.3.4.ebuild           | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
index b47fa0cb2..aefec8e10 100644
--- a/sci-biology/ants/ants-2.3.1_p20191013.ebuild
+++ b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
@@ -47,13 +47,13 @@ src_unpack() {
 src_configure() {
 	local mycmakeargs=(
 		-DUSE_SYSTEM_ITK=ON
-		-DITK_DIR="${EROOT}/usr/include/ITK-5.0/"
+		-DITK_DIR="${EPREFIX}/usr/include/ITK-5.0/"
 		-DBUILD_TESTING="$(usex test ON OFF)"
 		-DUSE_VTK=$(usex vtk ON OFF)
 		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
 	)
 	use vtk && mycmakeargs+=(
-		-DVTK_DIR="${EROOT}/usr/include/vtk-8.1/"
+		-DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
 	)
 	use test && mycmakeargs+=(
 		-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"

diff --git a/sci-biology/ants/ants-2.3.4.ebuild b/sci-biology/ants/ants-2.3.4.ebuild
index e00865149..2357036cd 100644
--- a/sci-biology/ants/ants-2.3.4.ebuild
+++ b/sci-biology/ants/ants-2.3.4.ebuild
@@ -50,14 +50,14 @@ src_unpack() {
 src_configure() {
 	local mycmakeargs=(
 		-DUSE_SYSTEM_ITK=ON
-		-DITK_DIR="${EROOT}/usr/include/ITK-5.1/"
+		-DITK_DIR="${EPREFIX}/usr/include/ITK-5.1/"
 		-DBUILD_TESTING="$(usex test ON OFF)"
 		-DUSE_VTK=$(usex vtk ON OFF)
 		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
 		-DANTS_SNAPSHOT_VERSION:STRING=${PV}
 	)
 	use vtk && mycmakeargs+=(
-		-DVTK_DIR="${EROOT}/usr/include/vtk-8.1/"
+		-DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
 	)
 	use test && mycmakeargs+=(
 		-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-09-26 13:08 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-09-26 13:08 UTC (permalink / raw
  To: gentoo-commits

commit:     c9769d1af4a59e038f327066530b32126c4e69ed
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sat Sep 26 13:08:15 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sat Sep 26 13:08:15 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=c9769d1a

sci-biology/ants: live package unusable w/o dynamic data

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-9999.ebuild | 70 ---------------------------------------
 1 file changed, 70 deletions(-)

diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
deleted file mode 100644
index 19d0a36db..000000000
--- a/sci-biology/ants/ants-9999.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-CMAKE_MAKEFILE_GENERATOR="emake"
-
-inherit cmake git-r3 multilib
-
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI="
-	test? (
-		http://chymera.eu/distfiles/ants_testdata-2.3.1_p20191013.tar.xz
-	)
-"
-EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS=""
-IUSE="test vtk"
-
-DEPEND="
-	vtk? (
-		~sci-libs/itk-5.0.1[vtkglue]
-		sci-libs/vtk
-	)
-	!vtk? (	~sci-libs/itk-5.0.1 )
-"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
-	"${FILESDIR}/${PN}-2.3.1_p20191013-paths.patch"
-)
-
-src_unpack() {
-	git-r3_src_unpack
-	if use test; then
-		mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
-		tar xvf "${DISTDIR}/ants_testdata-2.3.1_p20191013.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
-	fi
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DUSE_SYSTEM_ITK=ON
-		-DITK_DIR="/usr/include/ITK-5.0/"
-		-DBUILD_TESTING="$(usex test ON OFF)"
-		-DUSE_VTK=$(usex vtk ON OFF)
-		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
-	)
-	use vtk && mycmakeargs+=(
-		-DVTK_DIR="/usr/include/vtk-8.1/"
-	)
-	use test && mycmakeargs+=(
-		-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
-	)
-	cmake-utils_src_configure
-}
-
-src_install() {
-	BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
-	cmake-utils_src_install
-	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
-	dobin *.sh
-	dodir /usr/$(get_libdir)/ants
-	install -t "${D}"/usr/$(get_libdir)/ants * || die
-	doenvd "${FILESDIR}"/99ants
-}


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-12-07 20:09 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-12-07 20:09 UTC (permalink / raw
  To: gentoo-commits

commit:     3c90683a0ac9c21953cfa61ff00564dace91c4fa
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Dec  7 20:09:51 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Dec  7 20:09:51 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=3c90683a

sci-biology/ants: removed version with unavailable distfiles

Package-Manager: Portage-3.0.11, Repoman-3.0.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.3.1_p20191013.ebuild | 72 ----------------------------
 1 file changed, 72 deletions(-)

diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
deleted file mode 100644
index aefec8e10..000000000
--- a/sci-biology/ants/ants-2.3.1_p20191013.ebuild
+++ /dev/null
@@ -1,72 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-CMAKE_MAKEFILE_GENERATOR="emake"
-
-inherit cmake git-r3 multilib
-
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI="
-	test? (
-		http://chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
-	)
-"
-EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
-EGIT_COMMIT="f78b2d4a382d3090230641b5ade5da28962dad04"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-IUSE="test vtk"
-
-DEPEND="
-	vtk? (
-		~sci-libs/itk-5.0.1[vtkglue]
-		sci-libs/vtk
-	)
-	!vtk? (	~sci-libs/itk-5.0.1 )
-"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
-	"${FILESDIR}/${P}-logic.patch"
-	"${FILESDIR}/${P}-paths.patch"
-)
-
-src_unpack() {
-	git-r3_src_unpack
-	if use test; then
-		mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
-		tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
-	fi
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DUSE_SYSTEM_ITK=ON
-		-DITK_DIR="${EPREFIX}/usr/include/ITK-5.0/"
-		-DBUILD_TESTING="$(usex test ON OFF)"
-		-DUSE_VTK=$(usex vtk ON OFF)
-		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
-	)
-	use vtk && mycmakeargs+=(
-		-DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
-	)
-	use test && mycmakeargs+=(
-		-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
-	)
-	cmake-utils_src_configure
-}
-
-src_install() {
-	BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
-	cmake-utils_src_install
-	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
-	dobin *.sh
-	dodir /usr/$(get_libdir)/ants
-	install -t "${D}"/usr/$(get_libdir)/ants * || die
-	doenvd "${FILESDIR}"/99ants
-}


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2020-12-24 11:00 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2020-12-24 11:00 UTC (permalink / raw
  To: gentoo-commits

commit:     6db8e528f559b5db1dd0999173170b44118802b3
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Dec 24 10:52:04 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Dec 24 10:52:04 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6db8e528

sci-biology/ants: conditional test restriction

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.3.4.ebuild | 1 +
 1 file changed, 1 insertion(+)

diff --git a/sci-biology/ants/ants-2.3.4.ebuild b/sci-biology/ants/ants-2.3.4.ebuild
index 2357036cd..a457397a9 100644
--- a/sci-biology/ants/ants-2.3.4.ebuild
+++ b/sci-biology/ants/ants-2.3.4.ebuild
@@ -22,6 +22,7 @@ SLOT="0"
 LICENSE="BSD"
 KEYWORDS="~amd64 ~x86"
 IUSE="test vtk"
+RESTRICT="!test? ( test )"
 
 DEPEND="
 	vtk? (


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2022-08-31 10:56 Andrew Ammerlaan
  0 siblings, 0 replies; 27+ messages in thread
From: Andrew Ammerlaan @ 2022-08-31 10:56 UTC (permalink / raw
  To: gentoo-commits

commit:     7270f7d4cc28cda30144e8434dce425696390915
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Wed Aug 31 10:56:01 2022 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Wed Aug 31 10:56:01 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=7270f7d4

sci-biology/ants: add 2.4.1, drop 2.3.4

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 .../ants/{ants-2.3.4.ebuild => ants-2.4.1.ebuild}  | 39 +++++-----------------
 1 file changed, 9 insertions(+), 30 deletions(-)

diff --git a/sci-biology/ants/ants-2.3.4.ebuild b/sci-biology/ants/ants-2.4.1.ebuild
similarity index 56%
rename from sci-biology/ants/ants-2.3.4.ebuild
rename to sci-biology/ants/ants-2.4.1.ebuild
index 95eb6355b..feba81d2c 100644
--- a/sci-biology/ants/ants-2.3.4.ebuild
+++ b/sci-biology/ants/ants-2.4.1.ebuild
@@ -1,67 +1,46 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="emake"
-
 inherit cmake
 
 MY_PN="ANTs"
 
 DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
+HOMEPAGE="https://stnava.github.io/ANTs/"
 SRC_URI="
 	https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz ->  ${P}.tar.gz
-	test? (
-		http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
-	)
 "
+S="${WORKDIR}/${MY_PN}-${PV}"
 
 SLOT="0"
 LICENSE="BSD"
 KEYWORDS="~amd64 ~x86"
 IUSE="test vtk"
-RESTRICT="!test? ( test )"
+RESTRICT="test"
 
 DEPEND="
+	=sci-libs/itk-5.2*
 	vtk? (
-		~sci-libs/itk-5.1.0[vtkglue]
-		sci-libs/vtk
+		=sci-libs/itk-5.2*[vtkglue]
+		=sci-libs/vtk-9.1*
 	)
-	!vtk? (	~sci-libs/itk-5.1.0 )
 "
 RDEPEND="${DEPEND}"
 
-PATCHES=(
-	"${FILESDIR}/${P}-version.patch"
-	"${FILESDIR}/${P}-libdir.patch"
-)
-
-S="${WORKDIR}/${MY_PN}-${PV}"
-
-src_unpack() {
-	default
-	if use test; then
-		mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
-		tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
-	fi
-}
-
 src_configure() {
 	local mycmakeargs=(
 		-DUSE_SYSTEM_ITK=ON
-		-DITK_DIR="${EPREFIX}/usr/include/ITK-5.1/"
+		-DITK_DIR="${EPREFIX}/usr/include/ITK-5.2/"
 		-DBUILD_TESTING="$(usex test ON OFF)"
 		-DUSE_VTK=$(usex vtk ON OFF)
 		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
 		-DANTS_SNAPSHOT_VERSION:STRING=${PV}
 	)
 	use vtk && mycmakeargs+=(
-		-DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
-	)
-	use test && mycmakeargs+=(
-		-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
+		-DVTK_DIR="${EPREFIX}/usr/include/vtk-9.1/"
 	)
 	cmake_src_configure
 }


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2022-09-15  7:03 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2022-09-15  7:03 UTC (permalink / raw
  To: gentoo-commits

commit:     4d36e47773d01a0d4d91d2eee5d2701dcdebe9d0
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Sep 15 07:03:40 2022 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Sep 15 07:03:40 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=4d36e477

sci-biology/ants: add 2.3.4

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.3.4.ebuild | 78 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 78 insertions(+)

diff --git a/sci-biology/ants/ants-2.3.4.ebuild b/sci-biology/ants/ants-2.3.4.ebuild
new file mode 100644
index 000000000..95eb6355b
--- /dev/null
+++ b/sci-biology/ants/ants-2.3.4.ebuild
@@ -0,0 +1,78 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+CMAKE_MAKEFILE_GENERATOR="emake"
+
+inherit cmake
+
+MY_PN="ANTs"
+
+DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
+HOMEPAGE="http://stnava.github.io/ANTs/"
+SRC_URI="
+	https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz ->  ${P}.tar.gz
+	test? (
+		http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+	)
+"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+IUSE="test vtk"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+	vtk? (
+		~sci-libs/itk-5.1.0[vtkglue]
+		sci-libs/vtk
+	)
+	!vtk? (	~sci-libs/itk-5.1.0 )
+"
+RDEPEND="${DEPEND}"
+
+PATCHES=(
+	"${FILESDIR}/${P}-version.patch"
+	"${FILESDIR}/${P}-libdir.patch"
+)
+
+S="${WORKDIR}/${MY_PN}-${PV}"
+
+src_unpack() {
+	default
+	if use test; then
+		mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
+		tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
+	fi
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DUSE_SYSTEM_ITK=ON
+		-DITK_DIR="${EPREFIX}/usr/include/ITK-5.1/"
+		-DBUILD_TESTING="$(usex test ON OFF)"
+		-DUSE_VTK=$(usex vtk ON OFF)
+		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
+		-DANTS_SNAPSHOT_VERSION:STRING=${PV}
+	)
+	use vtk && mycmakeargs+=(
+		-DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
+	)
+	use test && mycmakeargs+=(
+		-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
+	)
+	cmake_src_configure
+}
+
+src_install() {
+	BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
+	cmake_src_install
+	cd "${S}/Scripts" || die "scripts dir not found"
+	dobin *.sh
+	dodir /usr/$(get_libdir)/ants
+	insinto "/usr/$(get_libdir)/ants"
+	doins *
+	doenvd "${FILESDIR}"/99ants
+}


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2022-09-15  7:57 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2022-09-15  7:57 UTC (permalink / raw
  To: gentoo-commits

commit:     c96283cc61aababf67741e437305f2f26bb837c8
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Sep 15 07:57:12 2022 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Sep 15 07:57:12 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=c96283cc

sci-biology/ants: unkeyword 2.4.1 for ~amd64, ~x86

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.4.1.ebuild | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/sci-biology/ants/ants-2.4.1.ebuild b/sci-biology/ants/ants-2.4.1.ebuild
index feba81d2c..59be784d6 100644
--- a/sci-biology/ants/ants-2.4.1.ebuild
+++ b/sci-biology/ants/ants-2.4.1.ebuild
@@ -17,7 +17,9 @@ S="${WORKDIR}/${MY_PN}-${PV}"
 
 SLOT="0"
 LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
+# Fails on account of not finding a source file:
+# https://ppb.chymera.eu/e8dcb1.log
+KEYWORDS=""
 IUSE="test vtk"
 RESTRICT="test"
 


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2022-09-15 11:17 Andrew Ammerlaan
  0 siblings, 0 replies; 27+ messages in thread
From: Andrew Ammerlaan @ 2022-09-15 11:17 UTC (permalink / raw
  To: gentoo-commits

commit:     b68bdff5d1fa625645b8a0b1dc16970292fe8da2
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 15 11:08:01 2022 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Thu Sep 15 11:08:01 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b68bdff5

Revert "sci-biology/ants: unkeyword 2.4.1 for ~amd64, ~x86"

This reverts commit c96283cc61aababf67741e437305f2f26bb837c8.

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/ants/ants-2.4.1.ebuild | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/sci-biology/ants/ants-2.4.1.ebuild b/sci-biology/ants/ants-2.4.1.ebuild
index 59be784d6..feba81d2c 100644
--- a/sci-biology/ants/ants-2.4.1.ebuild
+++ b/sci-biology/ants/ants-2.4.1.ebuild
@@ -17,9 +17,7 @@ S="${WORKDIR}/${MY_PN}-${PV}"
 
 SLOT="0"
 LICENSE="BSD"
-# Fails on account of not finding a source file:
-# https://ppb.chymera.eu/e8dcb1.log
-KEYWORDS=""
+KEYWORDS="~amd64 ~x86"
 IUSE="test vtk"
 RESTRICT="test"
 


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2022-09-15 11:17 Andrew Ammerlaan
  0 siblings, 0 replies; 27+ messages in thread
From: Andrew Ammerlaan @ 2022-09-15 11:17 UTC (permalink / raw
  To: gentoo-commits

commit:     99c2387ed4924cbebc3ebcbdbcaeb7daeba65a3e
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 15 11:08:53 2022 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Thu Sep 15 11:08:53 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=99c2387e

Revert "sci-biology/ants: add 2.3.4"

This version is broken because it references versions of vtk that does not exist
and depends on vtk incorrectly

This reverts commit 4d36e47773d01a0d4d91d2eee5d2701dcdebe9d0.

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/ants/ants-2.3.4.ebuild | 78 --------------------------------------
 1 file changed, 78 deletions(-)

diff --git a/sci-biology/ants/ants-2.3.4.ebuild b/sci-biology/ants/ants-2.3.4.ebuild
deleted file mode 100644
index 95eb6355b..000000000
--- a/sci-biology/ants/ants-2.3.4.ebuild
+++ /dev/null
@@ -1,78 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-CMAKE_MAKEFILE_GENERATOR="emake"
-
-inherit cmake
-
-MY_PN="ANTs"
-
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI="
-	https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz ->  ${P}.tar.gz
-	test? (
-		http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
-	)
-"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-IUSE="test vtk"
-RESTRICT="!test? ( test )"
-
-DEPEND="
-	vtk? (
-		~sci-libs/itk-5.1.0[vtkglue]
-		sci-libs/vtk
-	)
-	!vtk? (	~sci-libs/itk-5.1.0 )
-"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
-	"${FILESDIR}/${P}-version.patch"
-	"${FILESDIR}/${P}-libdir.patch"
-)
-
-S="${WORKDIR}/${MY_PN}-${PV}"
-
-src_unpack() {
-	default
-	if use test; then
-		mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
-		tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
-	fi
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DUSE_SYSTEM_ITK=ON
-		-DITK_DIR="${EPREFIX}/usr/include/ITK-5.1/"
-		-DBUILD_TESTING="$(usex test ON OFF)"
-		-DUSE_VTK=$(usex vtk ON OFF)
-		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
-		-DANTS_SNAPSHOT_VERSION:STRING=${PV}
-	)
-	use vtk && mycmakeargs+=(
-		-DVTK_DIR="${EPREFIX}/usr/include/vtk-8.1/"
-	)
-	use test && mycmakeargs+=(
-		-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
-	)
-	cmake_src_configure
-}
-
-src_install() {
-	BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
-	cmake_src_install
-	cd "${S}/Scripts" || die "scripts dir not found"
-	dobin *.sh
-	dodir /usr/$(get_libdir)/ants
-	insinto "/usr/$(get_libdir)/ants"
-	doins *
-	doenvd "${FILESDIR}"/99ants
-}


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2023-04-04  5:04 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2023-04-04  5:04 UTC (permalink / raw
  To: gentoo-commits

commit:     e308a2697588847fd872c972a303f278b549595b
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Apr  4 05:03:56 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Apr  4 05:03:56 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e308a269

sci-biology/ants: add 2.4.3

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.4.3.ebuild | 69 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 69 insertions(+)

diff --git a/sci-biology/ants/ants-2.4.3.ebuild b/sci-biology/ants/ants-2.4.3.ebuild
new file mode 100644
index 000000000..8ccad3c24
--- /dev/null
+++ b/sci-biology/ants/ants-2.4.3.ebuild
@@ -0,0 +1,69 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+CMAKE_MAKEFILE_GENERATOR="emake"
+inherit cmake
+
+MY_PN="ANTs"
+
+DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
+HOMEPAGE="https://stnava.github.io/ANTs/"
+SRC_URI="
+	https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz ->  ${P}.tar.gz
+	test? (
+		http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+	)
+"
+S="${WORKDIR}/${MY_PN}-${PV}"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+IUSE="test vtk"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+	!vtk? ( =sci-libs/itk-5.3*[fftw,-vtkglue] )
+	vtk? (
+		=sci-libs/itk-5.3*[fftw,vtkglue]
+		=sci-libs/vtk-9.2*
+	)
+"
+RDEPEND="${DEPEND}"
+
+src_unpack() {
+	default
+	if use test; then
+	    mkdir -p "${S}/.ExternalData/SHA512" || die "Could not create test data directory."
+	    tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/SHA512/" > /dev/null || die "Could not unpack test data."
+	fi
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DBUILD_EXAMPLES=OFF
+		-DUSE_SYSTEM_ITK=ON
+		-DITK_USE_SYSTEM_FFTW=ON
+		-DITK_DIR="${EPREFIX}/usr/include/ITK-5.3/"
+		-DBUILD_TESTING="$(usex test ON OFF)"
+		-DUSE_VTK=$(usex vtk ON OFF)
+		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
+	)
+	use vtk && mycmakeargs+=(
+		-DVTK_DIR="${EPREFIX}/usr/include/vtk-9.2/"
+	)
+	cmake_src_configure
+}
+
+src_install() {
+	BUILD_DIR="${WORKDIR}/${MY_PN}-${PV}_build/ANTS-build"
+	cmake_src_install
+	cd "${S}/Scripts" || die "scripts dir not found"
+	dobin *.sh
+	dodir /usr/$(get_libdir)/ants
+	insinto "/usr/$(get_libdir)/ants"
+	doins *
+	doenvd "${FILESDIR}"/99ants
+}


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2023-04-04 21:20 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2023-04-04 21:20 UTC (permalink / raw
  To: gentoo-commits

commit:     a3ee59439b944fb12f7398f587ed6aac601fb96d
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Apr  4 21:20:07 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Apr  4 21:20:07 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a3ee5943

sci-biology/ants: update SRC_URI

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.4.1-r1.ebuild | 17 +++++++++++++++--
 1 file changed, 15 insertions(+), 2 deletions(-)

diff --git a/sci-biology/ants/ants-2.4.1-r1.ebuild b/sci-biology/ants/ants-2.4.1-r1.ebuild
index 70d5d8873..78938d194 100644
--- a/sci-biology/ants/ants-2.4.1-r1.ebuild
+++ b/sci-biology/ants/ants-2.4.1-r1.ebuild
@@ -10,14 +10,19 @@ MY_PN="ANTs"
 
 DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
 HOMEPAGE="https://stnava.github.io/ANTs/"
-SRC_URI="https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz ->  ${P}.tar.gz"
+SRC_URI="
+	https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz ->  ${P}.tar.gz
+	test? (
+		http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+	)
+"
 S="${WORKDIR}/${MY_PN}-${PV}"
 
 SLOT="0"
 LICENSE="BSD"
 KEYWORDS="~amd64 ~x86"
 IUSE="test vtk"
-RESTRICT="test"
+RESTRICT="!test? ( test )"
 
 DEPEND="
 	!vtk? ( =sci-libs/itk-5.2*[fftw,-vtkglue] )
@@ -32,6 +37,14 @@ PATCHES=(
 	"${FILESDIR}/${P}-fix-compile.patch"
 )
 
+src_unpack() {
+	default
+	if use test; then
+		mkdir -p "${S}/.ExternalData/SHA512" || die "Could not create test data directory."
+		tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/SHA512/" > /dev/null || die "Could not unpack test data."
+	fi
+}
+
 src_configure() {
 	local mycmakeargs=(
 		-DBUILD_EXAMPLES=OFF


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2023-04-06  7:15 Horea Christian
  0 siblings, 0 replies; 27+ messages in thread
From: Horea Christian @ 2023-04-06  7:15 UTC (permalink / raw
  To: gentoo-commits

commit:     de78db6789868a76de74b3c77b342b79862bf0ac
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Apr  6 07:15:21 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Apr  6 07:15:21 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=de78db67

sci-biology/ants: update SRC_URI

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/ants/ants-2.4.1-r1.ebuild | 2 +-
 sci-biology/ants/ants-2.4.3.ebuild    | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/ants/ants-2.4.1-r1.ebuild b/sci-biology/ants/ants-2.4.1-r1.ebuild
index 78938d194..a2b9d637c 100644
--- a/sci-biology/ants/ants-2.4.1-r1.ebuild
+++ b/sci-biology/ants/ants-2.4.1-r1.ebuild
@@ -13,7 +13,7 @@ HOMEPAGE="https://stnava.github.io/ANTs/"
 SRC_URI="
 	https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz ->  ${P}.tar.gz
 	test? (
-		http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+		https://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
 	)
 "
 S="${WORKDIR}/${MY_PN}-${PV}"

diff --git a/sci-biology/ants/ants-2.4.3.ebuild b/sci-biology/ants/ants-2.4.3.ebuild
index 8ccad3c24..2dfa2a56d 100644
--- a/sci-biology/ants/ants-2.4.3.ebuild
+++ b/sci-biology/ants/ants-2.4.3.ebuild
@@ -13,7 +13,7 @@ HOMEPAGE="https://stnava.github.io/ANTs/"
 SRC_URI="
 	https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz ->  ${P}.tar.gz
 	test? (
-		http://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+		https://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
 	)
 "
 S="${WORKDIR}/${MY_PN}-${PV}"


^ permalink raw reply related	[flat|nested] 27+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ants/
@ 2023-05-02 12:52 Andrew Ammerlaan
  0 siblings, 0 replies; 27+ messages in thread
From: Andrew Ammerlaan @ 2023-05-02 12:52 UTC (permalink / raw
  To: gentoo-commits

commit:     573da60690ba0e001d582f50c745e4d82202912a
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May  2 12:52:17 2023 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May  2 12:52:17 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=573da606

sci-biology/ants: drop 2.4.1-r1

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/ants/ants-2.4.1-r1.ebuild | 73 -----------------------------------
 1 file changed, 73 deletions(-)

diff --git a/sci-biology/ants/ants-2.4.1-r1.ebuild b/sci-biology/ants/ants-2.4.1-r1.ebuild
deleted file mode 100644
index a2b9d637c..000000000
--- a/sci-biology/ants/ants-2.4.1-r1.ebuild
+++ /dev/null
@@ -1,73 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-CMAKE_MAKEFILE_GENERATOR="emake"
-inherit cmake
-
-MY_PN="ANTs"
-
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="https://stnava.github.io/ANTs/"
-SRC_URI="
-	https://github.com/ANTsX/ANTs/archive/v${PV}.tar.gz ->  ${P}.tar.gz
-	test? (
-		https://resources.chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
-	)
-"
-S="${WORKDIR}/${MY_PN}-${PV}"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-IUSE="test vtk"
-RESTRICT="!test? ( test )"
-
-DEPEND="
-	!vtk? ( =sci-libs/itk-5.2*[fftw,-vtkglue] )
-	vtk? (
-		=sci-libs/itk-5.2*[fftw,vtkglue]
-		=sci-libs/vtk-9.1*
-	)
-"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
-	"${FILESDIR}/${P}-fix-compile.patch"
-)
-
-src_unpack() {
-	default
-	if use test; then
-		mkdir -p "${S}/.ExternalData/SHA512" || die "Could not create test data directory."
-		tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/SHA512/" > /dev/null || die "Could not unpack test data."
-	fi
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DBUILD_EXAMPLES=OFF
-		-DUSE_SYSTEM_ITK=ON
-		-DITK_USE_SYSTEM_FFTW=ON
-		-DITK_DIR="${EPREFIX}/usr/include/ITK-5.2/"
-		-DBUILD_TESTING="$(usex test ON OFF)"
-		-DUSE_VTK=$(usex vtk ON OFF)
-		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
-	)
-	use vtk && mycmakeargs+=(
-		-DVTK_DIR="${EPREFIX}/usr/include/vtk-9.1/"
-	)
-	cmake_src_configure
-}
-
-src_install() {
-	BUILD_DIR="${WORKDIR}/${MY_PN}-${PV}_build/ANTS-build"
-	cmake_src_install
-	cd "${S}/Scripts" || die "scripts dir not found"
-	dobin *.sh
-	dodir /usr/$(get_libdir)/ants
-	insinto "/usr/$(get_libdir)/ants"
-	doins *
-	doenvd "${FILESDIR}"/99ants
-}


^ permalink raw reply related	[flat|nested] 27+ messages in thread
end of thread, other threads:[~2023-05-02 12:52 UTC | newest]

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