[gentoo-commits] proj/sci:master commit in: dev-lua/lua-md5/, dev-lua/lua-md5/files/, sci-biology/genometools/

[gentoo-commits] proj/sci:master commit in: dev-lua/lua-md5/, dev-lua/lua-md5/files/, sci-biology/genometools/

[Aisha Tammy]

commit:     8135299eca5f87441e95d0fdebcc45077f2315a0
Author:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
AuthorDate: Thu Sep 24 21:01:53 2020 +0000
Commit:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Thu Sep 24 21:01:53 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=8135299e

dev-lua/lua-md5, sci-biology/genometools: drop dead packages

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>

 .../files/lua-md5-1.2-respect-DESTDIR.patch        | 19 ----------
 dev-lua/lua-md5/lua-md5-1.2.ebuild                 | 25 -------------
 dev-lua/lua-md5/metadata.xml                       |  8 -----
 sci-biology/genometools/genometools-1.5.10.ebuild  | 41 ----------------------
 sci-biology/genometools/metadata.xml               | 12 -------
 5 files changed, 105 deletions(-)

diff --git a/dev-lua/lua-md5/files/lua-md5-1.2-respect-DESTDIR.patch b/dev-lua/lua-md5/files/lua-md5-1.2-respect-DESTDIR.patch
deleted file mode 100644
index 9f7e71027..000000000
--- a/dev-lua/lua-md5/files/lua-md5-1.2-respect-DESTDIR.patch
+++ /dev/null
@@ -1,19 +0,0 @@
---- Makefile.ori	2018-09-11 16:35:19.884248326 +0200
-+++ Makefile	2018-09-11 16:35:22.214321658 +0200
-@@ -22,11 +22,11 @@
- 	$(CC) $(CFLAGS) $(LIB_OPTION) -o src/$(DES56_LIBNAME) $(DES56_OBJS) $(COMPAT52_OBJS)
- 
- install: src/$(MD5_LIBNAME) src/$(DES56_LIBNAME)
--	mkdir -p $(LUA_LIBDIR)/md5
--	cp src/$(MD5_LIBNAME) $(LUA_LIBDIR)/md5/core.so
--	mkdir -p $(LUA_DIR)
--	cp $(MD5_LUAS) $(LUA_DIR)
--	cp src/$(DES56_LIBNAME) $(LUA_LIBDIR)
-+	mkdir -p $(DESTDIR)/$(LUA_LIBDIR)/md5
-+	cp src/$(MD5_LIBNAME) $(DESTDIR)/$(LUA_LIBDIR)/md5/core.so
-+	mkdir -p $(DESTDIR)/$(LUA_DIR)
-+	cp $(MD5_LUAS) $(DESTDIR)/$(LUA_DIR)
-+	cp src/$(DES56_LIBNAME) $(DESTDIR)/$(LUA_LIBDIR)
- 
- clean:
- 	rm -f $(MD5_OBJS) src/$(MD5_LIBNAME) $(DES56_OBJS) src/$(DES56_LIBNAME) $(COMPAT52_OBJS)

diff --git a/dev-lua/lua-md5/lua-md5-1.2.ebuild b/dev-lua/lua-md5/lua-md5-1.2.ebuild
deleted file mode 100644
index 14a644702..000000000
--- a/dev-lua/lua-md5/lua-md5-1.2.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit eutils
-
-DESCRIPTION="Basic cryptographic facilities for Lua 5.0, 5.1 or 5.2"
-HOMEPAGE="http://keplerproject.github.io/md5"
-SRC_URI="https://github.com/keplerproject/md5/archive/v1.2.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"/md5-"${PV}"
-
-src_prepare(){
-	epatch "${FILESDIR}"/lua-md5-1.2-respect-DESTDIR.patch
-	default
-}

diff --git a/dev-lua/lua-md5/metadata.xml b/dev-lua/lua-md5/metadata.xml
deleted file mode 100644
index 4163b4b2a..000000000
--- a/dev-lua/lua-md5/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-</pkgmetadata>

diff --git a/sci-biology/genometools/genometools-1.5.10.ebuild b/sci-biology/genometools/genometools-1.5.10.ebuild
deleted file mode 100644
index 9e69302c6..000000000
--- a/sci-biology/genometools/genometools-1.5.10.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="Tools for bioinformatics (Tallymer, Readjoiner, gff3validator, ...)"
-HOMEPAGE="http://genometools.org"
-SRC_URI="http://genometools.org/pub/${P}.tar.gz"
-
-LICENSE="ICS"
-SLOT="0"
-KEYWORDS=""
-IUSE="cairo"
-
-DEPEND="
-	dev-libs/glib
-	cairo? ( x11-libs/cairo x11-libs/pango )
-	sci-biology/samtools:0.1-legacy
-	dev-db/sqlite:3
-	>=dev-lang/lua-5.1:=
-	dev-lua/lpeg
-	dev-lua/luafilesystem
-	dev-lua/lua-md5
-	dev-lang/luajit
-	dev-libs/tre"
-RDEPEND="${DEPEND}"
-
-src_prepare(){
-	sed -e "s#/usr/local#"${EPREFIX}"/usr#g" -i Makefile || die
-	sed -e "s#/usr/include/bam#${EPREFIX}/usr/include/bam-0.1-legacy#" -i Makefile || die
-	sed -e "s#-lbam#-lbam-0.1-legacy#" -i Makefile || die
-	eapply_user
-}
-
-src_compile(){
-	local myemakeargs=( useshared=yes )
-	! use cairo && myemakeargs+=( cairo=no )
-	use x86 && myemakeargs+=( 32bit=yes )
-	use amd64 && myemakeargs+=( 64bit=yes )
-	emake ${myemakeargs}
-}

diff --git a/sci-biology/genometools/metadata.xml b/sci-biology/genometools/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/genometools/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>