From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 32BF713835A for ; Tue, 22 Sep 2020 11:12:27 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 25418E0848; Tue, 22 Sep 2020 11:12:26 +0000 (UTC) Received: from smtp.gentoo.org (dev.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 0151EE0848 for ; Tue, 22 Sep 2020 11:12:25 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 0DE46340DD5 for ; Tue, 22 Sep 2020 11:12:24 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 7BA33379 for ; Tue, 22 Sep 2020 11:12:22 +0000 (UTC) From: "Aisha Tammy" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Aisha Tammy" Message-ID: <1600772592.b3384a8937464678b96f7d9c47e0ce42df9f623f.epsilon-0@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/blat/, sci-biology/blat/files/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/blat/blat-36.ebuild sci-biology/blat/files/36-gentoo.patch sci-biology/blat/metadata.xml X-VCS-Directories: sci-biology/blat/ sci-biology/blat/files/ X-VCS-Committer: epsilon-0 X-VCS-Committer-Name: Aisha Tammy X-VCS-Revision: b3384a8937464678b96f7d9c47e0ce42df9f623f X-VCS-Branch: master Date: Tue, 22 Sep 2020 11:12:22 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 13fd13d0-ca56-486c-b2d2-bbcac5d748e6 X-Archives-Hash: 76a271bef5c133d3c731b6ca511586f2 commit: b3384a8937464678b96f7d9c47e0ce42df9f623f Author: Aisha Tammy aisha cc> AuthorDate: Tue Sep 22 11:01:32 2020 +0000 Commit: Aisha Tammy aisha cc> CommitDate: Tue Sep 22 11:03:12 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b3384a89 sci-biology/blat: drop package present in ::gentoo Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Aisha Tammy aisha.cc> sci-biology/blat/blat-36.ebuild | 48 ---------------------------------- sci-biology/blat/files/36-gentoo.patch | 27 ------------------- sci-biology/blat/metadata.xml | 8 ------ 3 files changed, 83 deletions(-) diff --git a/sci-biology/blat/blat-36.ebuild b/sci-biology/blat/blat-36.ebuild deleted file mode 100644 index 086d60ffd..000000000 --- a/sci-biology/blat/blat-36.ebuild +++ /dev/null @@ -1,48 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit eutils toolchain-funcs - -MY_PN="${PN}Src" - -DESCRIPTION="The BLAST-Like Alignment Tool, a fast genomic sequence aligner" -HOMEPAGE="http://www.cse.ucsc.edu/~kent/" -SRC_URI="http://hgwdev.cse.ucsc.edu/~kent/src/${MY_PN}${PV}.zip" - -SLOT="0" -LICENSE="blat" -KEYWORDS="~amd64 ~x86" -IUSE="" - -S="${WORKDIR}/${MY_PN}" - -DEPEND=" - app-arch/unzip - virtual/mysql - virtual/libmysqlclient" -RDEPEND="" - -src_prepare() { - eapply_user - epatch "${FILESDIR}"/${PV}-gentoo.patch - sed \ - -e "1i\CFLAGS=${CFLAGS}" \ - -e "1i\LDFLAGS=${LDFLAGS}" \ - -i inc/common.mk || die - tc-export CC -} - -src_compile() { - MACHTYPE=$(tc-arch) - [[ ${MACHTYPE} == "x86" ]] && MACHTYPE="i386" - mkdir -p "${S}/bin/${MACHTYPE}" - emake MACHTYPE="${MACHTYPE}" HOME="${S}" LDFLAGS="${LDFLAGS}" -} - -src_install() { - MACHTYPE=$(tc-arch) - [[ ${MACHTYPE} == "x86" ]] && MACHTYPE="i386" - dobin "${S}/bin/${MACHTYPE}/"* -} diff --git a/sci-biology/blat/files/36-gentoo.patch b/sci-biology/blat/files/36-gentoo.patch deleted file mode 100644 index d05fe64c2..000000000 --- a/sci-biology/blat/files/36-gentoo.patch +++ /dev/null @@ -1,27 +0,0 @@ ---- blatSrc/inc/userApp.mk.old 2014-11-06 04:19:54.000000000 +0100 -+++ blatSrc/inc/userApp.mk 2016-07-28 12:45:32.092378879 +0200 -@@ -28,11 +28,11 @@ - objects = ${O} ${extraObjects} ${externObjects} - - ${DESTDIR}${BINDIR}/${A}${EXE}: ${DEPLIBS} ${O} ${extraObjects} -- ${CC} ${COPT} -o ${DESTDIR}${BINDIR}/${A}${EXE} ${objects} ${LINKLIBS} ${L} -lm -+ ${CC} ${COPT} ${CFLAGS} ${LDFLAGS} -o ${DESTDIR}${BINDIR}/${A}${EXE} ${objects} ${LINKLIBS} ${L} -lm - ${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE} - - compile:: ${DEPLIBS} ${O} ${extraObjects} -- ${CC} ${COPT} ${CFLAGS} -o ${A}${EXE} ${objects} ${LINKLIBS} ${L} -lm -+ ${CC} ${COPT} ${CFLAGS} ${LDFLAGS} -o ${A}${EXE} ${objects} ${LINKLIBS} ${L} -lm - - install:: compile - rm -f ${DESTDIR}${BINDIR}/${A}${EXE} ---- blatSrc/blat/makefile.old 2011-03-29 03:43:44.000000000 +0200 -+++ blatSrc/blat/makefile 2016-07-28 12:41:11.905261175 +0200 -@@ -7,7 +7,7 @@ - O = blat.o - - blat: $O $(MYLIBS) -- ${CC} ${COPT} ${CFLAGS} -o ${DESTDIR}${BINDIR}/blat $O $(MYLIBS) $L -+ ${CC} ${COPT} ${CFLAGS} ${LDFLAGS} -o ${DESTDIR}${BINDIR}/blat $O $(MYLIBS) $L - ${STRIP} ${DESTDIR}${BINDIR}/blat${EXE} - - all: diff --git a/sci-biology/blat/metadata.xml b/sci-biology/blat/metadata.xml deleted file mode 100644 index 8417d1580..000000000 --- a/sci-biology/blat/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ - - - - - sci-biology@gentoo.org - Gentoo Biology Project - -