[gentoo-commits] proj/sci:master commit in: sci-biology/blat/, sci-biology/blat/files/

[gentoo-commits] proj/sci:master commit in: sci-biology/blat/, sci-biology/blat/files/

[Aisha Tammy]

commit:     b3384a8937464678b96f7d9c47e0ce42df9f623f
Author:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
AuthorDate: Tue Sep 22 11:01:32 2020 +0000
Commit:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Tue Sep 22 11:03:12 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b3384a89

sci-biology/blat: drop package

present in ::gentoo

Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>

 sci-biology/blat/blat-36.ebuild        | 48 ----------------------------------
 sci-biology/blat/files/36-gentoo.patch | 27 -------------------
 sci-biology/blat/metadata.xml          |  8 ------
 3 files changed, 83 deletions(-)

diff --git a/sci-biology/blat/blat-36.ebuild b/sci-biology/blat/blat-36.ebuild
deleted file mode 100644
index 086d60ffd..000000000
--- a/sci-biology/blat/blat-36.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit eutils toolchain-funcs
-
-MY_PN="${PN}Src"
-
-DESCRIPTION="The BLAST-Like Alignment Tool, a fast genomic sequence aligner"
-HOMEPAGE="http://www.cse.ucsc.edu/~kent/"
-SRC_URI="http://hgwdev.cse.ucsc.edu/~kent/src/${MY_PN}${PV}.zip"
-
-SLOT="0"
-LICENSE="blat"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-S="${WORKDIR}/${MY_PN}"
-
-DEPEND="
-	app-arch/unzip
-	virtual/mysql
-	virtual/libmysqlclient"
-RDEPEND=""
-
-src_prepare() {
-	eapply_user
-	epatch "${FILESDIR}"/${PV}-gentoo.patch
-	sed \
-		-e "1i\CFLAGS=${CFLAGS}" \
-		-e "1i\LDFLAGS=${LDFLAGS}" \
-		-i inc/common.mk || die
-	tc-export CC
-}
-
-src_compile() {
-	MACHTYPE=$(tc-arch)
-	[[ ${MACHTYPE} == "x86" ]] && MACHTYPE="i386"
-	mkdir -p "${S}/bin/${MACHTYPE}"
-	emake MACHTYPE="${MACHTYPE}" HOME="${S}" LDFLAGS="${LDFLAGS}"
-}
-
-src_install() {
-	MACHTYPE=$(tc-arch)
-	[[ ${MACHTYPE} == "x86" ]] && MACHTYPE="i386"
-	dobin "${S}/bin/${MACHTYPE}/"*
-}

diff --git a/sci-biology/blat/files/36-gentoo.patch b/sci-biology/blat/files/36-gentoo.patch
deleted file mode 100644
index d05fe64c2..000000000
--- a/sci-biology/blat/files/36-gentoo.patch
+++ /dev/null
@@ -1,27 +0,0 @@
---- blatSrc/inc/userApp.mk.old	2014-11-06 04:19:54.000000000 +0100
-+++ blatSrc/inc/userApp.mk	2016-07-28 12:45:32.092378879 +0200
-@@ -28,11 +28,11 @@
- objects = ${O} ${extraObjects} ${externObjects}
- 
- ${DESTDIR}${BINDIR}/${A}${EXE}: ${DEPLIBS} ${O} ${extraObjects}
--	${CC} ${COPT} -o ${DESTDIR}${BINDIR}/${A}${EXE} ${objects} ${LINKLIBS} ${L} -lm
-+	${CC} ${COPT} ${CFLAGS} ${LDFLAGS} -o ${DESTDIR}${BINDIR}/${A}${EXE} ${objects} ${LINKLIBS} ${L} -lm
- 	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
- 
- compile:: ${DEPLIBS} ${O} ${extraObjects}
--	${CC} ${COPT} ${CFLAGS} -o ${A}${EXE} ${objects} ${LINKLIBS} ${L} -lm
-+	${CC} ${COPT} ${CFLAGS} ${LDFLAGS} -o ${A}${EXE} ${objects} ${LINKLIBS} ${L} -lm
- 
- install:: compile
- 	rm -f ${DESTDIR}${BINDIR}/${A}${EXE}
---- blatSrc/blat/makefile.old	2011-03-29 03:43:44.000000000 +0200
-+++ blatSrc/blat/makefile	2016-07-28 12:41:11.905261175 +0200
-@@ -7,7 +7,7 @@
- O = blat.o
- 
- blat: $O $(MYLIBS)
--	${CC} ${COPT} ${CFLAGS} -o ${DESTDIR}${BINDIR}/blat $O $(MYLIBS) $L
-+	${CC} ${COPT} ${CFLAGS} ${LDFLAGS} -o ${DESTDIR}${BINDIR}/blat $O $(MYLIBS) $L
- 	${STRIP} ${DESTDIR}${BINDIR}/blat${EXE}
- 
- all:

diff --git a/sci-biology/blat/metadata.xml b/sci-biology/blat/metadata.xml
deleted file mode 100644
index 8417d1580..000000000
--- a/sci-biology/blat/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>