From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 39F9E13835B for ; Tue, 22 Sep 2020 11:12:27 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 347C4E0869; Tue, 22 Sep 2020 11:12:26 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 1B377E0869 for ; Tue, 22 Sep 2020 11:12:25 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id C988B340DB8 for ; Tue, 22 Sep 2020 11:12:23 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 3DE6033A for ; Tue, 22 Sep 2020 11:12:22 +0000 (UTC) From: "Aisha Tammy" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Aisha Tammy" Message-ID: <1600771397.a34f3a93dc9085b7ecb7a7bd7db671351243373c.epsilon-0@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/STAR/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/STAR/STAR-9999.ebuild sci-biology/STAR/metadata.xml X-VCS-Directories: sci-biology/STAR/ X-VCS-Committer: epsilon-0 X-VCS-Committer-Name: Aisha Tammy X-VCS-Revision: a34f3a93dc9085b7ecb7a7bd7db671351243373c X-VCS-Branch: master Date: Tue, 22 Sep 2020 11:12:22 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: a85ec6d0-2bc9-4172-8b24-ac908f26d37a X-Archives-Hash: f951d31b7b387bde44cd2fa704130d71 commit: a34f3a93dc9085b7ecb7a7bd7db671351243373c Author: Aisha Tammy aisha cc> AuthorDate: Tue Sep 22 10:43:17 2020 +0000 Commit: Aisha Tammy aisha cc> CommitDate: Tue Sep 22 10:43:17 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a34f3a93 sci-biology/STAR: drop package present in ::gentoo Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Aisha Tammy aisha.cc> sci-biology/STAR/STAR-9999.ebuild | 36 ------------------------------------ sci-biology/STAR/metadata.xml | 15 --------------- 2 files changed, 51 deletions(-) diff --git a/sci-biology/STAR/STAR-9999.ebuild b/sci-biology/STAR/STAR-9999.ebuild deleted file mode 100644 index 787583b66..000000000 --- a/sci-biology/STAR/STAR-9999.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit git-r3 toolchain-funcs - -DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays" -HOMEPAGE="http://code.google.com/p/rna-star/" -EGIT_REPO_URI="https://github.com/alexdobin/STAR.git" -# http://rna-star.googlecode.com/files/STARmanual_2.3.0.1.pdf - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -# contains bundled version sci-biology/htslib-0.0.1 -DEPEND="" -RDEPEND="${DEPEND}" - -# contains bundled STAR-Fusion -src_prepare(){ - sed -e "s/= gcc/= $(tc-getCC)/;s/-O2/${CFLAGS}/g" -i source/htslib/Makefile || die - sed -e "s/-O3/${CFLAGS}/g" -i source/Makefile || die -} - -src_compile(){ - cd source || die - emake STAR -} - -src_install(){ - dobin source/STAR - dodoc doc/STARmanual.pdf -} diff --git a/sci-biology/STAR/metadata.xml b/sci-biology/STAR/metadata.xml deleted file mode 100644 index 1f2f45f25..000000000 --- a/sci-biology/STAR/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ - - - - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - - sci-biology@gentoo.org - Gentoo Biology Project - - - alexdobin/STAR - -