From: "Aisha Tammy" <gentoo@aisha.cc>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/STAR/
Date: Tue, 22 Sep 2020 11:12:22 +0000 (UTC) [thread overview]
Message-ID: <1600771397.a34f3a93dc9085b7ecb7a7bd7db671351243373c.epsilon-0@gentoo> (raw)
commit: a34f3a93dc9085b7ecb7a7bd7db671351243373c
Author: Aisha Tammy <gentoo <AT> aisha <DOT> cc>
AuthorDate: Tue Sep 22 10:43:17 2020 +0000
Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Tue Sep 22 10:43:17 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a34f3a93
sci-biology/STAR: drop package
present in ::gentoo
Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>
sci-biology/STAR/STAR-9999.ebuild | 36 ------------------------------------
sci-biology/STAR/metadata.xml | 15 ---------------
2 files changed, 51 deletions(-)
diff --git a/sci-biology/STAR/STAR-9999.ebuild b/sci-biology/STAR/STAR-9999.ebuild
deleted file mode 100644
index 787583b66..000000000
--- a/sci-biology/STAR/STAR-9999.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit git-r3 toolchain-funcs
-
-DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays"
-HOMEPAGE="http://code.google.com/p/rna-star/"
-EGIT_REPO_URI="https://github.com/alexdobin/STAR.git"
-# http://rna-star.googlecode.com/files/STARmanual_2.3.0.1.pdf
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-# contains bundled version sci-biology/htslib-0.0.1
-DEPEND=""
-RDEPEND="${DEPEND}"
-
-# contains bundled STAR-Fusion
-src_prepare(){
- sed -e "s/= gcc/= $(tc-getCC)/;s/-O2/${CFLAGS}/g" -i source/htslib/Makefile || die
- sed -e "s/-O3/${CFLAGS}/g" -i source/Makefile || die
-}
-
-src_compile(){
- cd source || die
- emake STAR
-}
-
-src_install(){
- dobin source/STAR
- dodoc doc/STARmanual.pdf
-}
diff --git a/sci-biology/STAR/metadata.xml b/sci-biology/STAR/metadata.xml
deleted file mode 100644
index 1f2f45f25..000000000
--- a/sci-biology/STAR/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="github">alexdobin/STAR</remote-id>
- </upstream>
-</pkgmetadata>
next reply other threads:[~2020-09-22 11:12 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-09-22 11:12 Aisha Tammy [this message]
-- strict thread matches above, loose matches on Subject: below --
2017-11-16 17:56 [gentoo-commits] proj/sci:master commit in: sci-biology/STAR/ David Seifert
2015-05-05 14:04 Martin Mokrejs
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