From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id EEC9C1382C5 for ; Fri, 15 May 2020 19:31:11 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 35648E0B1D; Fri, 15 May 2020 19:31:11 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 19302E0B1D for ; Fri, 15 May 2020 19:31:10 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 16FA334EFF3 for ; Fri, 15 May 2020 19:31:07 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 9D439239 for ; Fri, 15 May 2020 19:31:04 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1589571047.f3a538b68e80b3fc42af81717f48a5cbfb283f45.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/SPAdes/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/SPAdes/SPAdes-3.14.0.ebuild sci-biology/SPAdes/SPAdes-3.14.1.ebuild X-VCS-Directories: sci-biology/SPAdes/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: f3a538b68e80b3fc42af81717f48a5cbfb283f45 X-VCS-Branch: master Date: Fri, 15 May 2020 19:31:04 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: ac9491f1-00cf-4ea6-93e5-1a76eae2881e X-Archives-Hash: 713dc8c8e248586ec6a34ea266cb24e7 commit: f3a538b68e80b3fc42af81717f48a5cbfb283f45 Author: Martin Mokrejs gmail com> AuthorDate: Fri May 15 19:30:28 2020 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri May 15 19:30:47 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f3a538b6 sci-biology/SPAdes: version bump to 3.14.1 This is a bug-fix release, which includes: - Fix for read filtering tool; - Soft and hard-filtered transcripts are now copied to the output folder in rnaSPAdes; - Minor fix in biosyntheticSPAdes pipeline; - Minor fix in metaplasmidSPAdes contig output; - Several usability fixes in `spades.py'; - Other minor bug-fixes. Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Martin Mokrejs gmail.com> sci-biology/SPAdes/{SPAdes-3.14.0.ebuild => SPAdes-3.14.1.ebuild} | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/sci-biology/SPAdes/SPAdes-3.14.0.ebuild b/sci-biology/SPAdes/SPAdes-3.14.1.ebuild similarity index 87% rename from sci-biology/SPAdes/SPAdes-3.14.0.ebuild rename to sci-biology/SPAdes/SPAdes-3.14.1.ebuild index d3c1e0a57..773ccf658 100644 --- a/sci-biology/SPAdes/SPAdes-3.14.0.ebuild +++ b/sci-biology/SPAdes/SPAdes-3.14.1.ebuild @@ -13,11 +13,7 @@ SRC_URI=" https://github.com/ablab/spades/releases/download/v${PV}/${P}.tar.gz http://cab.spbu.ru/files/release${PV}/manual.html -> ${P}_manual.html http://cab.spbu.ru/files/release${PV}/rnaspades_manual.html -> ${P}_rnaspades_manual.html - http://cab.spbu.ru/files/release${PV}/truspades_manual.html -> ${P}_truspades_manual.html - http://spades.bioinf.spbau.ru/release3.11.1/dipspades_manual.html -> ${P}_dipspades_manual.html" -# DEPRECATED in 3.12.0: dipSPAdes pipeline for highly polymorphic diploid genomes -# (still present in the release but no longer supported) - + http://cab.spbu.ru/files/release${PV}/truspades_manual.html -> ${P}_truspades_manual.html" LICENSE="GPL-2" SLOT="0" KEYWORDS=""