* [gentoo-commits] proj/sci:master commit in: sci-biology/bruker2nifti/
@ 2020-04-02 4:11 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2020-04-02 4:11 UTC (permalink / raw
To: gentoo-commits
commit: ca73ecf31bb85b7a3a976df75fbdbec29627ff12
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Apr 2 04:10:47 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Apr 2 04:10:47 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ca73ecf3
sci-biology/bruker2nifti: new package
Python Bruker ParaVision to NIfTI converter
Package-Manager: Portage-2.3.96, Repoman-2.3.22
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild | 31 ++++++++++++++++++++++
sci-biology/bruker2nifti/metadata.xml | 16 +++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild b/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
new file mode 100644
index 000000000..2297139a2
--- /dev/null
+++ b/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7} )
+
+inherit distutils-r1
+
+DESCRIPTION="Medical image converter, from raw Bruker ParaVision to NIfTI"
+HOMEPAGE="https://github.com/SebastianoF/bruker2nifti"
+SRC_URI="https://github.com/SebastianoF/bruker2nifti/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+
+RDEPEND="
+ dev-python/numpy[${PYTHON_USEDEP}]
+ sci-libs/nibabel[${PYTHON_USEDEP}]
+ "
+
+#S="${WORKDIR}/Bru2Nii-${PV}"
+
+python_prepare_all() {
+ sed -i -e "s/packages=find_packages()/packages=find_packages(exclude=('test',))/g"\
+ setup.py || die
+ distutils-r1_python_prepare_all
+}
+
+distutils_enable_tests pytest
diff --git a/sci-biology/bruker2nifti/metadata.xml b/sci-biology/bruker2nifti/metadata.xml
new file mode 100644
index 000000000..d67826b4d
--- /dev/null
+++ b/sci-biology/bruker2nifti/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="project">
+ <email>sci@gentoo.org</email>
+ <name>Gentoo Science Project</name>
+ </maintainer>
+ <longdescription lang="en">
+ Bruker2nifti is an open source medical image format converter from
+ raw Bruker ParaVision to NifTi, without any intermediate step through
+ the DICOM standard format.
+ </longdescription>
+ <upstream>
+ <remote-id type="github">SebastianoF/bruker2nifti</remote-id>
+ </upstream>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/bruker2nifti/
@ 2020-04-02 7:20 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2020-04-02 7:20 UTC (permalink / raw
To: gentoo-commits
commit: d4e32baceff32b5365d4e48e9dd42b6fe8c449b9
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Apr 2 07:18:53 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Apr 2 07:18:53 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d4e32bac
sci-biology/bruker2nifti: fixed DISTUTILS_USE_SETUPTOOLS
Package-Manager: Portage-2.3.96, Repoman-2.3.22
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild b/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
index 2297139a2..5586732e0 100644
--- a/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
+++ b/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
@@ -3,6 +3,7 @@
EAPI=7
+DISTUTILS_USE_SETUPTOOLS="rdepend"
PYTHON_COMPAT=( python3_{6,7} )
inherit distutils-r1
@@ -20,8 +21,6 @@ RDEPEND="
sci-libs/nibabel[${PYTHON_USEDEP}]
"
-#S="${WORKDIR}/Bru2Nii-${PV}"
-
python_prepare_all() {
sed -i -e "s/packages=find_packages()/packages=find_packages(exclude=('test',))/g"\
setup.py || die
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/bruker2nifti/
@ 2021-01-20 9:28 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-01-20 9:28 UTC (permalink / raw
To: gentoo-commits
commit: 5aee72fc309665677e9601aa0d82cf6422be90fc
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Jan 20 09:28:33 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Jan 20 09:28:33 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5aee72fc
sci-biology/bruker2nifti: bump python compat
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild b/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
index 5586732e0..7a9c238ce 100644
--- a/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
+++ b/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
DISTUTILS_USE_SETUPTOOLS="rdepend"
-PYTHON_COMPAT=( python3_{6,7} )
+PYTHON_COMPAT=( python3_{7,8,9} )
inherit distutils-r1
@@ -28,3 +28,4 @@ python_prepare_all() {
}
distutils_enable_tests pytest
+distutils_enable_sphinx docs
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/bruker2nifti/
@ 2022-07-28 10:48 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2022-07-28 10:48 UTC (permalink / raw
To: gentoo-commits
commit: 657ad67053610be0051846ffaa88043989c66731
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Jul 28 10:48:27 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Jul 28 10:48:27 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=657ad670
sci-biology/bruker2nifti: PYTHON_COMPAT bump 3.10
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild b/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
index 7a9c238ce..9550415b1 100644
--- a/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
+++ b/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=7
+EAPI=8
DISTUTILS_USE_SETUPTOOLS="rdepend"
-PYTHON_COMPAT=( python3_{7,8,9} )
+PYTHON_COMPAT=( python3_{8..10} )
inherit distutils-r1
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/bruker2nifti/
@ 2023-05-02 23:48 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-05-02 23:48 UTC (permalink / raw
To: gentoo-commits
commit: 70928fbfdb98e8afb20c189fc961e650ce04a7ab
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue May 2 23:48:46 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue May 2 23:48:46 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=70928fbf
sci-biology/bruker2nifti: enable py3.11
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild b/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
index a94c2be48..dc0c49e6f 100644
--- a/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
+++ b/sci-biology/bruker2nifti/bruker2nifti-1.0.4.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
DISTUTILS_USE_SETUPTOOLS="rdepend"
-PYTHON_COMPAT=( python3_10 )
+PYTHON_COMPAT=( python3_{10..11} )
inherit distutils-r1
^ permalink raw reply related [flat|nested] 5+ messages in thread
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