From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 6CCB4138350 for ; Mon, 30 Mar 2020 04:23:13 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 88077E0885; Mon, 30 Mar 2020 04:23:12 +0000 (UTC) Received: from smtp.gentoo.org (dev.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 5FE2AE0885 for ; Mon, 30 Mar 2020 04:23:12 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 9707834F49A for ; Mon, 30 Mar 2020 04:23:10 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id DE5D31A3 for ; Mon, 30 Mar 2020 04:23:07 +0000 (UTC) From: "Horea Christian" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Horea Christian" Message-ID: <1585542176.4c04ec99ba702fcb718122050c008eaf5ad7fed3.chymera@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/ X-VCS-Repository: proj/sci X-VCS-Files: sci-libs/nipype/nipype-1.1.0.ebuild sci-libs/nipype/nipype-1.1.1-r1.ebuild sci-libs/nipype/nipype-9999.ebuild X-VCS-Directories: sci-libs/nipype/ X-VCS-Committer: chymera X-VCS-Committer-Name: Horea Christian X-VCS-Revision: 4c04ec99ba702fcb718122050c008eaf5ad7fed3 X-VCS-Branch: master Date: Mon, 30 Mar 2020 04:23:07 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 1ebf0173-ced0-4cce-8c5c-9d934db93786 X-Archives-Hash: 80baa9cdb9a8c8f7e73678093c0eb3e8 commit: 4c04ec99ba702fcb718122050c008eaf5ad7fed3 Author: Horea Christian chymera eu> AuthorDate: Mon Mar 30 04:22:56 2020 +0000 Commit: Horea Christian gmail com> CommitDate: Mon Mar 30 04:22:56 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4c04ec99 sci-libs/nipype: PYTHON_COMPAT 3_7 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.1.0.ebuild | 54 ------------------------------- sci-libs/nipype/nipype-1.1.1-r1.ebuild | 30 +++++++++--------- sci-libs/nipype/nipype-9999.ebuild | 58 ---------------------------------- 3 files changed, 15 insertions(+), 127 deletions(-) diff --git a/sci-libs/nipype/nipype-1.1.0.ebuild b/sci-libs/nipype/nipype-1.1.0.ebuild deleted file mode 100644 index f7c871659..000000000 --- a/sci-libs/nipype/nipype-1.1.0.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python{3_4,3_5,3_6} ) -PYTHON_REQ_USE="threads(+),sqlite" - -inherit distutils-r1 - -DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/" -SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test" - -DEPEND=" - dev-python/future[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - test? ( - dev-python/mock[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - dev-python/pytest-xdist[${PYTHON_USEDEP}] - ${RDEPEND} - ) - $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) - " -RDEPEND=" - >=dev-python/click-6.6[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/packaging[${PYTHON_USEDEP}] - dev-python/pydotplus[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/python-dateutil[${PYTHON_USEDEP}] - dev-python/simplejson[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - virtual/python-funcsigs[${PYTHON_USEDEP}] - " - -python_test() { - py.test -v --cov nipype\ - --cov-config .coveragerc\ - --cov-report xml:cov.xml\ - -c nipype/pytest.ini\ - --doctest-modules nipype\ - || die -} diff --git a/sci-libs/nipype/nipype-1.1.1-r1.ebuild b/sci-libs/nipype/nipype-1.1.1-r1.ebuild index 959ce9a63..1baca8aa8 100644 --- a/sci-libs/nipype/nipype-1.1.1-r1.ebuild +++ b/sci-libs/nipype/nipype-1.1.1-r1.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python{3_4,3_5,3_6} ) +PYTHON_COMPAT=( python3_{6,7} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 @@ -20,19 +20,18 @@ IUSE="test" DEPEND=" dev-python/future[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] - ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] + dev-python/prov[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] test? ( dev-python/mock[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - dev-python/pytest-xdist[${PYTHON_USEDEP}] + <=dev-python/pytest-4.6.9[${PYTHON_USEDEP}] ${RDEPEND} ) - $(python_gen_cond_dep ' - dev-python/futures[${PYTHON_USEDEP}] - dev-python/configparser[${PYTHON_USEDEP}]' python2_7) - " +" +# Dependency disabled as upstream test configuration which requires it fails +#dev-python/pytest-xdist[${PYTHON_USEDEP}] + RDEPEND=" >=dev-python/click-6.6[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] @@ -44,8 +43,7 @@ RDEPEND=" dev-python/simplejson[${PYTHON_USEDEP}] dev-python/traits[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] - virtual/python-funcsigs[${PYTHON_USEDEP}] - " +" src_prepare() { sed -i\ @@ -56,10 +54,12 @@ src_prepare() { } python_test() { - py.test -v --cov nipype\ - --cov-config .coveragerc\ - --cov-report xml:cov.xml\ - -c nipype/pytest.ini\ - --doctest-modules nipype\ + pytest -vv\ || die + # Upstream test configuration fails + #-c nipype/pytest.ini\ + #--doctest-modules nipype\ + #--cov nipype\ + #--cov-config .coveragerc\ + #--cov-report xml:cov.xml\ } diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild deleted file mode 100644 index dc35f3e2e..000000000 --- a/sci-libs/nipype/nipype-9999.ebuild +++ /dev/null @@ -1,58 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python{3_4,3_5,3_6} ) -PYTHON_REQ_USE="threads(+),sqlite" - -inherit distutils-r1 git-r3 - -DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/" -SRC_URI="" -EGIT_REPO_URI="https://github.com/nipy/nipype" - -LICENSE="Apache-2.0" -SLOT="0" -KEYWORDS="" -IUSE="test" - -DEPEND=" - dev-python/future[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - test? ( - dev-python/mock[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - dev-python/pytest-xdist[${PYTHON_USEDEP}] - ${RDEPEND} - ) - $(python_gen_cond_dep ' - dev-python/futures[${PYTHON_USEDEP}] - dev-python/configparser[${PYTHON_USEDEP}]' python2_7) - " -RDEPEND=" - >=dev-python/click-6.6[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/packaging[${PYTHON_USEDEP}] - dev-python/pydot[${PYTHON_USEDEP}] - dev-python/pydotplus[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/python-dateutil[${PYTHON_USEDEP}] - dev-python/simplejson[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - virtual/python-funcsigs[${PYTHON_USEDEP}] - " - -python_test() { - py.test -v --cov nipype\ - --cov-config .coveragerc\ - --cov-report xml:cov.xml\ - -c nipype/pytest.ini\ - --doctest-modules nipype\ - || die -}