From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 206B7138350 for ; Fri, 27 Mar 2020 10:35:47 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 5D70AE0AAF; Fri, 27 Mar 2020 10:35:46 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 43CB9E0AAF for ; Fri, 27 Mar 2020 10:35:46 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id F310534F43C for ; Fri, 27 Mar 2020 10:35:44 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 9120F199 for ; Fri, 27 Mar 2020 10:35:43 +0000 (UTC) From: "David Seifert" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "David Seifert" Message-ID: <1585305324.d7ff0662f30a752f5b948fda9193a27bfe09099d.soap@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/samtools/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/samtools/samtools-1.9-r1.ebuild sci-biology/samtools/samtools-1.9.ebuild X-VCS-Directories: sci-biology/samtools/ X-VCS-Committer: soap X-VCS-Committer-Name: David Seifert X-VCS-Revision: d7ff0662f30a752f5b948fda9193a27bfe09099d X-VCS-Branch: master Date: Fri, 27 Mar 2020 10:35:43 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 300a75f0-5f13-4f90-9b1c-1327c020084d X-Archives-Hash: b255c662994b12d9f50772f2b3dd4660 commit: d7ff0662f30a752f5b948fda9193a27bfe09099d Author: David Seifert gentoo org> AuthorDate: Fri Mar 27 10:35:24 2020 +0000 Commit: David Seifert gentoo org> CommitDate: Fri Mar 27 10:35:24 2020 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d7ff0662 sci-biology/samtools: Remove python dependency Closes: https://bugs.gentoo.org/710252 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: David Seifert gentoo.org> .../{samtools-1.9.ebuild => samtools-1.9-r1.ebuild} | 19 ++++++++----------- 1 file changed, 8 insertions(+), 11 deletions(-) diff --git a/sci-biology/samtools/samtools-1.9.ebuild b/sci-biology/samtools/samtools-1.9-r1.ebuild similarity index 72% rename from sci-biology/samtools/samtools-1.9.ebuild rename to sci-biology/samtools/samtools-1.9-r1.ebuild index bdcd115aafe..0d0f993895f 100644 --- a/sci-biology/samtools/samtools-1.9.ebuild +++ b/sci-biology/samtools/samtools-1.9-r1.ebuild @@ -1,11 +1,9 @@ -# Copyright 1999-2018 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -PYTHON_COMPAT=( python2_7 ) - -inherit autotools python-single-r1 toolchain-funcs +inherit autotools toolchain-funcs DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" HOMEPAGE="http://www.htslib.org/" @@ -15,22 +13,18 @@ LICENSE="MIT" SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" IUSE="examples" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND=" dev-lang/perl =sci-libs/htslib-${PV}* sys-libs/ncurses:0= - sys-libs/zlib:= - ${PYTHON_DEPS}" -DEPEND="${RDEPEND} - virtual/pkgconfig" + sys-libs/zlib:=" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" src_prepare() { default - python_fix_shebang misc/varfilter.py - # remove bundled htslib rm -r htslib-* || die @@ -45,6 +39,9 @@ src_test() { src_install() { default + # varfilter.py has been retired upstream for being py2 only + rm "${ED}"/usr/bin/varfilter.py || die + if use examples; then dodoc -r examples docompress -x /usr/share/doc/${PF}/examples