[gentoo-commits] repo/gentoo:master commit in: sci-biology/samtools/

["David Seifert" <soap@gentoo.org>]

commit:     d7ff0662f30a752f5b948fda9193a27bfe09099d
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Fri Mar 27 10:35:24 2020 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Fri Mar 27 10:35:24 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d7ff0662

sci-biology/samtools: Remove python dependency

Closes: https://bugs.gentoo.org/710252
Package-Manager: Portage-2.3.96, Repoman-2.3.22
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 .../{samtools-1.9.ebuild => samtools-1.9-r1.ebuild}   | 19 ++++++++-----------
 1 file changed, 8 insertions(+), 11 deletions(-)

diff --git a/sci-biology/samtools/samtools-1.9.ebuild b/sci-biology/samtools/samtools-1.9-r1.ebuild
similarity index 72%
rename from sci-biology/samtools/samtools-1.9.ebuild
rename to sci-biology/samtools/samtools-1.9-r1.ebuild
index bdcd115aafe..0d0f993895f 100644
--- a/sci-biology/samtools/samtools-1.9.ebuild
+++ b/sci-biology/samtools/samtools-1.9-r1.ebuild
@@ -1,11 +1,9 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python2_7 )
-
-inherit autotools python-single-r1 toolchain-funcs
+inherit autotools toolchain-funcs
 
 DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
 HOMEPAGE="http://www.htslib.org/"
@@ -15,22 +13,18 @@ LICENSE="MIT"
 SLOT="0"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 IUSE="examples"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
 
 RDEPEND="
 	dev-lang/perl
 	=sci-libs/htslib-${PV}*
 	sys-libs/ncurses:0=
-	sys-libs/zlib:=
-	${PYTHON_DEPS}"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
+	sys-libs/zlib:="
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
 
 src_prepare() {
 	default
 
-	python_fix_shebang misc/varfilter.py
-
 	# remove bundled htslib
 	rm -r htslib-* || die
 
@@ -45,6 +39,9 @@ src_test() {
 src_install() {
 	default
 
+	# varfilter.py has been retired upstream for being py2 only
+	rm "${ED}"/usr/bin/varfilter.py || die
+
 	if use examples; then
 		dodoc -r examples
 		docompress -x /usr/share/doc/${PF}/examples