[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/ghemical/files/, sci-chemistry/ghemical/, profiles/

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/ghemical/files/, sci-chemistry/ghemical/, profiles/

[Michał Górny]

commit:     cb0539aca3c58e0b84d702bb1862edc6e0ae9c50
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Fri Feb 21 20:22:28 2020 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Fri Feb 21 20:22:51 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cb0539ac

sci-chemistry/ghemical: Remove last-rited pkg

Closes: https://bugs.gentoo.org/353119
Closes: https://bugs.gentoo.org/435676
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 profiles/package.mask                             |  5 --
 sci-chemistry/ghemical/Manifest                   |  1 -
 sci-chemistry/ghemical/files/2.99.2-docs.patch    | 22 ---------
 sci-chemistry/ghemical/files/3.0.0-fix-gcc9.patch | 37 ---------------
 sci-chemistry/ghemical/ghemical-3.0.0.ebuild      | 56 -----------------------
 sci-chemistry/ghemical/metadata.xml               | 20 --------
 6 files changed, 141 deletions(-)

diff --git a/profiles/package.mask b/profiles/package.mask
index 819ea3183a2..20aa9512581 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -586,11 +586,6 @@ games-strategy/gwp
 # No revdeps, Removal in 30 days.
 sci-chemistry/gabedit
 
-# David Seifert <soap@gentoo.org> (2020-01-21)
-# Last release over 13 years ago, depends on EOL gtkglext, no revdeps.
-# Bug #353119, #435676. Removal in 30 days.
-sci-chemistry/ghemical
-
 # Michał Górny <mgorny@gentoo.org> (2020-01-16)
 # The new version loses Python 2 support but does not introduce any real
 # changes.  Let's mask it to reduce the noise, and hopefully try to get

diff --git a/sci-chemistry/ghemical/Manifest b/sci-chemistry/ghemical/Manifest
deleted file mode 100644
index d0ef0805921..00000000000
--- a/sci-chemistry/ghemical/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST ghemical-3.0.0.tar.gz 2196716 BLAKE2B 62008667c58cb058beb8eb3946bb96fb03aceff7cc93f64aecc697a7648946936208063b419aca57f740d5760a90d923d81f8cc8d80fb68bdf924b23cd2061b3 SHA512 d4dd0b063a4dea33fa7430e77a2da253c74079fd8b5f21e8c2b5da1383f3689b93305417e1bf0d4908b87c91afb33c3266dd6bd6fbcd768cc98614a3f730ee94

diff --git a/sci-chemistry/ghemical/files/2.99.2-docs.patch b/sci-chemistry/ghemical/files/2.99.2-docs.patch
deleted file mode 100644
index 85f31dfd729..00000000000
--- a/sci-chemistry/ghemical/files/2.99.2-docs.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-diff --git a/docs/user-docs/Makefile.am b/docs/user-docs/Makefile.am
-index 030f67c..dcb207b 100644
---- a/docs/user-docs/Makefile.am
-+++ b/docs/user-docs/Makefile.am
-@@ -1,6 +1,6 @@
- SUBDIRS = images
- 
--helpfilesdir = $(datadir)/ghemical/@APPVERSION@/user-docs
-+helpfilesdir = $(datadir)/doc/ghemical-@APPVERSION@/html
- helpfiles_DATA = *.css *.html
- 
- EXTRA_DIST = $(helpfiles_DATA)
-diff --git a/docs/user-docs/images/Makefile.am b/docs/user-docs/images/Makefile.am
-index fae0ffd..a569151 100644
---- a/docs/user-docs/images/Makefile.am
-+++ b/docs/user-docs/images/Makefile.am
-@@ -1,4 +1,4 @@
--helpimagesdir = $(datadir)/ghemical/@APPVERSION@/user-docs/images
-+helpimagesdir = $(datadir)/doc/ghemical-@APPVERSION@/html/images
- helpimages_DATA = *.png
- 
- EXTRA_DIST = $(helpimages_DATA)

diff --git a/sci-chemistry/ghemical/files/3.0.0-fix-gcc9.patch b/sci-chemistry/ghemical/files/3.0.0-fix-gcc9.patch
deleted file mode 100644
index d3d80bbd00b..00000000000
--- a/sci-chemistry/ghemical/files/3.0.0-fix-gcc9.patch
+++ /dev/null
@@ -1,37 +0,0 @@
-https://bugs.gentoo.org/687450
-
-project.h:210:14: error: friend declaration of ‘bool ReadGPR_OLD(project&, std::istream&, bool, bool)’ specifies default arguments and isn’t a definition [-fpermissive]
-  210 |  friend bool ReadGPR_OLD(project &, istream &, bool, bool = false);  ///< this is for the very old version.
-      |              ^~~~~~~~~~~
-
---- a/src/project.h
-+++ b/src/project.h
-@@ -122,6 +122,12 @@
- 	graphical user interface.
- */
- 
-+class project;
-+bool ReadGPR_OLD(project &, istream &, bool, bool = false);
-+bool ReadGPR_v100(project &, istream &, bool, bool = false);
-+bool ReadGPR_v110(project &, istream &, bool, bool = false);
-+bool ReadGPR(project &, istream &, bool, bool = false);
-+
- class project :
- 	public custom_transformer_client,
- 	public model
-@@ -207,11 +213,11 @@
- 
- // methods for file I/O : ReadGPR and WriteGPR are friend functions so that it would be easier to "borrow" them elsewhere...
- // ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
--	friend bool ReadGPR_OLD(project &, istream &, bool, bool = false);		///< this is for the very old version.
--	friend bool ReadGPR_v100(project &, istream &, bool, bool = false);		///< this is for the version 1.00.
--	friend bool ReadGPR_v110(project &, istream &, bool, bool = false);		///< this is for the version 1.10.
-+	friend bool ReadGPR_OLD(project &, istream &, bool, bool);		///< this is for the very old version.
-+	friend bool ReadGPR_v100(project &, istream &, bool, bool);		///< this is for the version 1.00.
-+	friend bool ReadGPR_v110(project &, istream &, bool, bool);		///< this is for the version 1.10.
- /// This is an input function for the v1.11 ghemical file format.
--	friend bool ReadGPR(project &, istream &, bool, bool = false);
-+	friend bool ReadGPR(project &, istream &, bool, bool);
- 	
- 	friend void WriteGPR_v100(project &, ostream &);	///< this is for the version 1.00.
- /// This is an output function for the v1.11 ghemical file format.

diff --git a/sci-chemistry/ghemical/ghemical-3.0.0.ebuild b/sci-chemistry/ghemical/ghemical-3.0.0.ebuild
deleted file mode 100644
index 477c41439c2..00000000000
--- a/sci-chemistry/ghemical/ghemical-3.0.0.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit autotools desktop
-
-DESCRIPTION="Chemical quantum mechanics and molecular mechanics"
-HOMEPAGE="http://bioinformatics.org/ghemical/"
-SRC_URI="http://bioinformatics.org/ghemical/download/current/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="openbabel seamonkey threads"
-
-RDEPEND="
-	dev-libs/glib:2
-	gnome-base/libglade:2.0
-	sci-chemistry/mpqc
-	>=sci-libs/libghemical-3.0.0:=
-	>=x11-libs/liboglappth-1.0.0:=
-	virtual/opengl
-	x11-libs/pango:0=
-	x11-libs/gtk+:2
-	x11-libs/gtkglext:0=
-	openbabel? ( sci-chemistry/openbabel )"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-PATCHES=(
-	"${FILESDIR}"/2.99.2-docs.patch
-	"${FILESDIR}"/3.0.0-fix-gcc9.patch
-)
-
-src_prepare() {
-	default
-	eautoreconf
-}
-
-src_configure() {
-	# With amd64, if you want gamess I recommend adding gamess and gtk-gamess to package.provided for now.
-
-	# Change the built-in help browser.
-	sed -e "s|mozilla|$(usex seamonkey seamonkey firefox)|g" \
-		-i src/gtk_app.cpp || die "sed failed for $(usex seamonkey seamonkey firefox)!"
-
-	econf \
-		$(use_enable openbabel) \
-		$(use_enable threads)
-}
-
-src_install() {
-	default
-	make_desktop_entry ghemical Ghemical /usr/share/ghemical/${PV}/pixmaps/ghemical.png
-}

diff --git a/sci-chemistry/ghemical/metadata.xml b/sci-chemistry/ghemical/metadata.xml
deleted file mode 100644
index 90f25b17693..00000000000
--- a/sci-chemistry/ghemical/metadata.xml
+++ /dev/null
@@ -1,20 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-chemistry@gentoo.org</email>
-    <name>Gentoo Chemistry Project</name>
-  </maintainer>
-  <longdescription>
-Ghemical supports both quantum-mechanics (semi-empirical and ab initio) models 
-and molecular mechanics models (there is an experimental Tripos 5.2-like force 
-field for organic molecules). Also a tool for reduced protein models is 
-included. Geometry optimization, molecular dynamics and a large set of 
-visualization tools are currently available.
-</longdescription>
-  <use>
-    <flag name="openbabel">Use <pkg>sci-chemistry/openbabel</pkg> for file
-    conversions</flag>
-    <flag name="seamonkey">Add support for the Seamonkey web-browser</flag>
-  </use>
-</pkgmetadata>