From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id E71CD138350 for ; Mon, 3 Feb 2020 04:02:55 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 57BEFE0829; Mon, 3 Feb 2020 04:02:54 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id C6816E07F2 for ; Mon, 3 Feb 2020 04:02:53 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 1C29334E496 for ; Mon, 3 Feb 2020 04:02:52 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id D8ED312F for ; Mon, 3 Feb 2020 04:02:49 +0000 (UTC) From: "Benda XU" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Benda XU" Message-ID: <1580702554.4b71324f723868c8e6c4bef7f95776ba556e7932.heroxbd@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/consed2gap/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/consed2gap/consed2gap-20050520.ebuild sci-biology/consed2gap/metadata.xml X-VCS-Directories: sci-biology/consed2gap/ X-VCS-Committer: heroxbd X-VCS-Committer-Name: Benda XU X-VCS-Revision: 4b71324f723868c8e6c4bef7f95776ba556e7932 X-VCS-Branch: master Date: Mon, 3 Feb 2020 04:02:49 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: ded2e4e0-156b-4fea-b90d-d50f654576b5 X-Archives-Hash: 964bc6dc7f47fee7bc308a2efd9e8e32 commit: 4b71324f723868c8e6c4bef7f95776ba556e7932 Author: Benda Xu gentoo org> AuthorDate: Mon Feb 3 03:34:38 2020 +0000 Commit: Benda XU gentoo org> CommitDate: Mon Feb 3 04:02:34 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4b71324f sci-biology/consed2gap: remove from tree. 1. No upstream updates since 2005. 2. perl-app eclass is removed from main repo. Bug: https://bugs.gentoo.org/707558 Signed-off-by: Benda Xu gentoo.org> sci-biology/consed2gap/consed2gap-20050520.ebuild | 37 ----------------------- sci-biology/consed2gap/metadata.xml | 12 -------- 2 files changed, 49 deletions(-) diff --git a/sci-biology/consed2gap/consed2gap-20050520.ebuild b/sci-biology/consed2gap/consed2gap-20050520.ebuild deleted file mode 100644 index e8bf492df..000000000 --- a/sci-biology/consed2gap/consed2gap-20050520.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit perl-module perl-app - -DESCRIPTION="Convert whole CONSED dataset to a GAP4 project" -HOMEPAGE="http://genome.imb-jena.de/software/consed2gap/" -SRC_URI="http://genome.imb-jena.de/software/consed2gap/consed2gap.tgz -> ${P}.tgz" - -LICENSE="FLI-Jena" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="" -RDEPEND="${DEPEND} - dev-lang/perl:= - sci-libs/io_lib - sci-biology/caftools - sci-biology/align_to_scf" - -S="${WORKDIR}/${PN}" - -src_prepare(){ - sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/phrap2caf || die - sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/badgerGetOpt.pl || die -} - -src_install(){ - dobin bin/consed2gap bin/phrap2caf bin/badgerGetOpt.pl - dodir /usr/share/"${PN}" - mv example "${ED}"/usr/share/"${PN}"/ || die - - cd bin && perl-module_src_install -} diff --git a/sci-biology/consed2gap/metadata.xml b/sci-biology/consed2gap/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/consed2gap/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ - - - - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - - sci-biology@gentoo.org - Gentoo Biology Project - -