* [gentoo-commits] proj/sci:master commit in: sci-biology/consed2gap/
@ 2014-03-23 22:44 Martin Mokrejs
0 siblings, 0 replies; 3+ messages in thread
From: Martin Mokrejs @ 2014-03-23 22:44 UTC (permalink / raw
To: gentoo-commits
commit: f650ffd23911ac46a4d47d3a641200ec2df67a67
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 22:42:41 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 22:42:41 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f650ffd2
sci-biology/consed2gap: new package, works
Package-Manager: portage-2.2.7
---
sci-biology/consed2gap/ChangeLog | 9 ++++++
sci-biology/consed2gap/consed2gap-20050520.ebuild | 38 +++++++++++++++++++++++
sci-biology/consed2gap/metadata.xml | 9 ++++++
3 files changed, 56 insertions(+)
diff --git a/sci-biology/consed2gap/ChangeLog b/sci-biology/consed2gap/ChangeLog
new file mode 100644
index 0000000..ee91ed4
--- /dev/null
+++ b/sci-biology/consed2gap/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/consed2gap
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*consed2gap-20050520 (23 Mar 2014)
+
+ 23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +consed2gap-20050520.ebuild, +metadata.xml:
+ sci-biology/consed2gap: new package, works
diff --git a/sci-biology/consed2gap/consed2gap-20050520.ebuild b/sci-biology/consed2gap/consed2gap-20050520.ebuild
new file mode 100644
index 0000000..9a0223f
--- /dev/null
+++ b/sci-biology/consed2gap/consed2gap-20050520.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+inherit perl-module perl-app
+
+DESCRIPTION="convert whole CONSED dataset to a GAP4 project"
+HOMEPAGE="http://genome.imb-jena.de/software/consed2gap/"
+SRC_URI="http://genome.imb-jena.de/software/consed2gap/consed2gap.tgz"
+
+LICENSE="FLI-Jena"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+ dev-lang/perl
+ sci-libs/io_lib
+ sci-biology/caftools
+ sci-biology/align_to_scf"
+
+MY_P="consed2gap"
+S="${WORKDIR}/${MY_P}"
+
+src_prepare(){
+ sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/phrap2caf || die
+ sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/badgerGetOpt.pl || die
+}
+
+src_install(){
+ dobin bin/consed2gap bin/phrap2caf bin/badgerGetOpt.pl || die
+ mkdir -p "${D}"/usr/share/"${PN}" || die
+ cp -r example "${D}"/usr/share/"${PN}" || die
+
+ cd bin && perl-module_src_install
+}
diff --git a/sci-biology/consed2gap/metadata.xml b/sci-biology/consed2gap/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/consed2gap/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/consed2gap/
@ 2014-09-24 6:45 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2014-09-24 6:45 UTC (permalink / raw
To: gentoo-commits
commit: 3ff34c74dc96805669b3a4c656bbf6f618a50b76
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Sep 24 06:29:26 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Sep 24 06:29:26 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3ff34c74
sci-biology/consed2gap: Bump to EAPI=5
Package-Manager: portage-2.2.13
---
sci-biology/consed2gap/ChangeLog | 4 ++++
sci-biology/consed2gap/consed2gap-20050520.ebuild | 24 +++++++++++------------
sci-biology/consed2gap/metadata.xml | 10 +++++-----
3 files changed, 21 insertions(+), 17 deletions(-)
diff --git a/sci-biology/consed2gap/ChangeLog b/sci-biology/consed2gap/ChangeLog
index ee91ed4..579fb3d 100644
--- a/sci-biology/consed2gap/ChangeLog
+++ b/sci-biology/consed2gap/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 24 Sep 2014; Justin Lecher <jlec@gentoo.org> consed2gap-20050520.ebuild,
+ metadata.xml:
+ Bump to EAPI=5
+
*consed2gap-20050520 (23 Mar 2014)
23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
diff --git a/sci-biology/consed2gap/consed2gap-20050520.ebuild b/sci-biology/consed2gap/consed2gap-20050520.ebuild
index 9a0223f..7a682bc 100644
--- a/sci-biology/consed2gap/consed2gap-20050520.ebuild
+++ b/sci-biology/consed2gap/consed2gap-20050520.ebuild
@@ -2,12 +2,13 @@
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=3
+EAPI=5
+
inherit perl-module perl-app
-DESCRIPTION="convert whole CONSED dataset to a GAP4 project"
+DESCRIPTION="Convert whole CONSED dataset to a GAP4 project"
HOMEPAGE="http://genome.imb-jena.de/software/consed2gap/"
-SRC_URI="http://genome.imb-jena.de/software/consed2gap/consed2gap.tgz"
+SRC_URI="http://genome.imb-jena.de/software/consed2gap/consed2gap.tgz -> ${P}.tgz"
LICENSE="FLI-Jena"
SLOT="0"
@@ -16,13 +17,12 @@ IUSE=""
DEPEND=""
RDEPEND="${DEPEND}
- dev-lang/perl
- sci-libs/io_lib
- sci-biology/caftools
- sci-biology/align_to_scf"
+ dev-lang/perl:=
+ sci-libs/io_lib
+ sci-biology/caftools
+ sci-biology/align_to_scf"
-MY_P="consed2gap"
-S="${WORKDIR}/${MY_P}"
+S="${WORKDIR}/${PN}"
src_prepare(){
sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/phrap2caf || die
@@ -30,9 +30,9 @@ src_prepare(){
}
src_install(){
- dobin bin/consed2gap bin/phrap2caf bin/badgerGetOpt.pl || die
- mkdir -p "${D}"/usr/share/"${PN}" || die
- cp -r example "${D}"/usr/share/"${PN}" || die
+ dobin bin/consed2gap bin/phrap2caf bin/badgerGetOpt.pl
+ dodir /usr/share/"${PN}"
+ mv example "${ED}"/usr/share/"${PN}"/ || die
cd bin && perl-module_src_install
}
diff --git a/sci-biology/consed2gap/metadata.xml b/sci-biology/consed2gap/metadata.xml
index 07b5255..2bc8930 100644
--- a/sci-biology/consed2gap/metadata.xml
+++ b/sci-biology/consed2gap/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <herd>sci-biology</herd>
- <maintainer>
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/consed2gap/
@ 2020-02-03 4:02 Benda XU
0 siblings, 0 replies; 3+ messages in thread
From: Benda XU @ 2020-02-03 4:02 UTC (permalink / raw
To: gentoo-commits
commit: 4b71324f723868c8e6c4bef7f95776ba556e7932
Author: Benda Xu <heroxbd <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 3 03:34:38 2020 +0000
Commit: Benda XU <heroxbd <AT> gentoo <DOT> org>
CommitDate: Mon Feb 3 04:02:34 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4b71324f
sci-biology/consed2gap: remove from tree.
1. No upstream updates since 2005.
2. perl-app eclass is removed from main repo.
Bug: https://bugs.gentoo.org/707558
Signed-off-by: Benda Xu <heroxbd <AT> gentoo.org>
sci-biology/consed2gap/consed2gap-20050520.ebuild | 37 -----------------------
sci-biology/consed2gap/metadata.xml | 12 --------
2 files changed, 49 deletions(-)
diff --git a/sci-biology/consed2gap/consed2gap-20050520.ebuild b/sci-biology/consed2gap/consed2gap-20050520.ebuild
deleted file mode 100644
index e8bf492df..000000000
--- a/sci-biology/consed2gap/consed2gap-20050520.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit perl-module perl-app
-
-DESCRIPTION="Convert whole CONSED dataset to a GAP4 project"
-HOMEPAGE="http://genome.imb-jena.de/software/consed2gap/"
-SRC_URI="http://genome.imb-jena.de/software/consed2gap/consed2gap.tgz -> ${P}.tgz"
-
-LICENSE="FLI-Jena"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}
- dev-lang/perl:=
- sci-libs/io_lib
- sci-biology/caftools
- sci-biology/align_to_scf"
-
-S="${WORKDIR}/${PN}"
-
-src_prepare(){
- sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/phrap2caf || die
- sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/badgerGetOpt.pl || die
-}
-
-src_install(){
- dobin bin/consed2gap bin/phrap2caf bin/badgerGetOpt.pl
- dodir /usr/share/"${PN}"
- mv example "${ED}"/usr/share/"${PN}"/ || die
-
- cd bin && perl-module_src_install
-}
diff --git a/sci-biology/consed2gap/metadata.xml b/sci-biology/consed2gap/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/consed2gap/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 3+ messages in thread
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