[gentoo-commits] proj/sci:master commit in: sci-biology/SPAdes/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     84bb511d7a904b2e151faa1f9224dd91a196349f
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Jan  6 17:13:56 2020 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Jan  6 17:13:56 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=84bb511d

sci-biology/SPAdes: version bump

- BiosyntheticSPAdes pipeline for identifying Biosynthetic Gene Clusters (BGCs)
- Hybrid transcriptome assembly (Illumina RNA-Seq + Iso-seq / ONT RNA)
- Plasmid assembly from metagenomic datasets
- New --isolate option that improves assembly quality of standard datasets with
  high coverage
- New standalone tools for read filtration based on k-mer coverage and
  estimating number of unique k-mers in reads
- Improved SPAligner tool for read-to-graph alignment
- Major performance improvements and memory consumption reduction in graph
  construction, simplification procedures and throughout the whole pipeline
- Several bug-fixes.

Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>

 sci-biology/SPAdes/SPAdes-3.13.0.ebuild                           | 2 +-
 sci-biology/SPAdes/{SPAdes-3.13.0.ebuild => SPAdes-3.14.0.ebuild} | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/SPAdes/SPAdes-3.13.0.ebuild b/sci-biology/SPAdes/SPAdes-3.13.0.ebuild
index 00ccc4f27..d3c1e0a57 100644
--- a/sci-biology/SPAdes/SPAdes-3.13.0.ebuild
+++ b/sci-biology/SPAdes/SPAdes-3.13.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6

diff --git a/sci-biology/SPAdes/SPAdes-3.13.0.ebuild b/sci-biology/SPAdes/SPAdes-3.14.0.ebuild
similarity index 98%
copy from sci-biology/SPAdes/SPAdes-3.13.0.ebuild
copy to sci-biology/SPAdes/SPAdes-3.14.0.ebuild
index 00ccc4f27..d3c1e0a57 100644
--- a/sci-biology/SPAdes/SPAdes-3.13.0.ebuild
+++ b/sci-biology/SPAdes/SPAdes-3.14.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6