From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 976F3138334 for ; Mon, 30 Dec 2019 15:33:38 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id EEEFEE09F3; Mon, 30 Dec 2019 15:33:37 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id D77FEE09F3 for ; Mon, 30 Dec 2019 15:33:37 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 9BB8B34DD68 for ; Mon, 30 Dec 2019 15:33:36 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 5ADB37A for ; Mon, 30 Dec 2019 15:33:35 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1577720005.5b51e6e70104d94d1a287add2206c31eca040da2.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/biobambam2/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/biobambam2/biobambam2-2.0.146.ebuild X-VCS-Directories: sci-biology/biobambam2/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 5b51e6e70104d94d1a287add2206c31eca040da2 X-VCS-Branch: master Date: Mon, 30 Dec 2019 15:33:35 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 5bd6969f-1ff0-48da-ad7b-30e106c9270c X-Archives-Hash: 747aaf0b817dcdefc9b84af65e09598e commit: 5b51e6e70104d94d1a287add2206c31eca040da2 Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Mon Dec 30 15:33:25 2019 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Dec 30 15:33:25 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5b51e6e7 sci-biology/biobambam2: version bump to 2.0.146 Package-Manager: Portage-2.3.75, Repoman-2.3.17 Signed-off-by: Martin Mokrejs fold.natur.cuni.cz> sci-biology/biobambam2/biobambam2-2.0.146.ebuild | 29 ++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/sci-biology/biobambam2/biobambam2-2.0.146.ebuild b/sci-biology/biobambam2/biobambam2-2.0.146.ebuild new file mode 100644 index 000000000..1921fe3b7 --- /dev/null +++ b/sci-biology/biobambam2/biobambam2-2.0.146.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit autotools + +release_data="20191030105216" + +DESCRIPTION="Tools for bam file processing (libmaus2)" +HOMEPAGE="https://gitlab.com/german.tischler/biobambam2 + https://github.com/gt1/biobambam2" +SRC_URI="https://gitlab.com/german.tischler/${PN}/-/archive/${PV}-release-${release_data}/${P}-release-${release_data}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3 MIT" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=" + !sci-biology/biobambam + >=sci-libs/libmaus2-2.0.683" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${P}-release-${release_data}" + +src_configure(){ + econf --with-libmaus2="${EPREFIX}" +}