* [gentoo-commits] repo/gentoo:master commit in: sci-biology/phylip/
@ 2015-12-07 7:15 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2015-12-07 7:15 UTC (permalink / raw
To: gentoo-commits
commit: 4de276291f0a434375d93748a25e8ef5c85c9bb0
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Dec 7 07:15:03 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Dec 7 07:15:03 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4de27629
sci-biology/phylip: Fix install path for libs
Package-Manager: portage-2.2.26
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/phylip/{phylip-3.696.ebuild => phylip-3.696-r1.ebuild} | 1 +
1 file changed, 1 insertion(+)
diff --git a/sci-biology/phylip/phylip-3.696.ebuild b/sci-biology/phylip/phylip-3.696-r1.ebuild
similarity index 96%
rename from sci-biology/phylip/phylip-3.696.ebuild
rename to sci-biology/phylip/phylip-3.696-r1.ebuild
index cf6fe40..c9c7b70 100644
--- a/sci-biology/phylip/phylip-3.696.ebuild
+++ b/sci-biology/phylip/phylip-3.696-r1.ebuild
@@ -43,6 +43,7 @@ src_install() {
mv exe/font* fonts || die "Font move failed."
mv exe/factor exe/factor-${PN} || die "Renaming factor failed."
+ dolib.so exe/*so && rm exe/*so || die
dobin exe/*
dodoc "${FILESDIR}"/README.Gentoo
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/phylip/
@ 2018-02-15 23:23 Sergei Trofimovich
0 siblings, 0 replies; 6+ messages in thread
From: Sergei Trofimovich @ 2018-02-15 23:23 UTC (permalink / raw
To: gentoo-commits
commit: 0c014a7762f9b51e602420690a6388d33aefce01
Author: Sergei Trofimovich <slyfox <AT> gentoo <DOT> org>
AuthorDate: Thu Feb 15 23:22:45 2018 +0000
Commit: Sergei Trofimovich <slyfox <AT> gentoo <DOT> org>
CommitDate: Thu Feb 15 23:23:15 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0c014a77
sci-biology/phylip: block against dev-lang/elixir, bug #537514
Reported-by: Toralf Förster
Bug: https://bugs.gentoo.org/537514
Package-Manager: Portage-2.3.24, Repoman-2.3.6
sci-biology/phylip/phylip-3.696-r2.ebuild | 55 +++++++++++++++++++++++++++++++
1 file changed, 55 insertions(+)
diff --git a/sci-biology/phylip/phylip-3.696-r2.ebuild b/sci-biology/phylip/phylip-3.696-r2.ebuild
new file mode 100644
index 00000000000..c19085ed6cf
--- /dev/null
+++ b/sci-biology/phylip/phylip-3.696-r2.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit toolchain-funcs
+
+DESCRIPTION=" The PHYLogeny Inference Package"
+HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
+SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD-2"
+IUSE=""
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+# 'mix' tool collides with dev-lang/elixir, bug #537514
+RDEPEND="x11-libs/libXaw
+ !!dev-lang/elixir"
+DEPEND="${RDEPEND}
+ x11-proto/xproto"
+
+S="${WORKDIR}/${P}/src"
+
+src_prepare() {
+ mv Makefile.unx Makefile || die
+ sed \
+ -e "/ -o /s:\(\$(CC)\):\1 ${LDFLAGS}:g" \
+ -i Makefile || die "Patching Makefile failed."
+ mkdir ../fonts || die
+}
+
+src_compile() {
+ emake -j1 \
+ CC="$(tc-getCC)" \
+ DC="$(tc-getCC)" \
+ CFLAGS="${CFLAGS} -Wno-unused-result" \
+ all put
+}
+
+src_install() {
+ cd "${WORKDIR}/${P}" || die
+
+ mv exe/font* fonts || die "Font move failed."
+ mv exe/factor exe/factor-${PN} || die "Renaming factor failed."
+
+ dolib.so exe/*so && rm exe/*so || die
+ dobin exe/*
+
+ dodoc "${FILESDIR}"/README.Gentoo
+
+ dohtml -r phylip.html doc
+
+ insinto /usr/share/${PN}/
+ doins -r fonts
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/phylip/
@ 2018-05-22 1:19 Matt Turner
0 siblings, 0 replies; 6+ messages in thread
From: Matt Turner @ 2018-05-22 1:19 UTC (permalink / raw
To: gentoo-commits
commit: 4c97225b5df4a6bd101888aac3a3e7b2eeafa674
Author: Arfrever Frehtes Taifersar Arahesis <Arfrever <AT> Apache <DOT> Org>
AuthorDate: Tue May 22 00:19:09 2018 +0000
Commit: Matt Turner <mattst88 <AT> gentoo <DOT> org>
CommitDate: Tue May 22 01:05:15 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4c97225b
sci-biology/phylip: Update dependencies (x11-proto/* -> x11-base/xorg-proto).
sci-biology/phylip/phylip-3.69-r1.ebuild | 4 ++--
sci-biology/phylip/phylip-3.696-r1.ebuild | 4 ++--
sci-biology/phylip/phylip-3.696-r2.ebuild | 2 +-
3 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/sci-biology/phylip/phylip-3.69-r1.ebuild b/sci-biology/phylip/phylip-3.69-r1.ebuild
index 658c92e785c..12f00781080 100644
--- a/sci-biology/phylip/phylip-3.69-r1.ebuild
+++ b/sci-biology/phylip/phylip-3.69-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -16,7 +16,7 @@ KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos"
RDEPEND="x11-libs/libXaw"
DEPEND="${RDEPEND}
- x11-proto/xproto"
+ x11-base/xorg-proto"
S="${WORKDIR}/${P}/src"
diff --git a/sci-biology/phylip/phylip-3.696-r1.ebuild b/sci-biology/phylip/phylip-3.696-r1.ebuild
index 03b33b30380..3943d363794 100644
--- a/sci-biology/phylip/phylip-3.696-r1.ebuild
+++ b/sci-biology/phylip/phylip-3.696-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -16,7 +16,7 @@ KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
RDEPEND="x11-libs/libXaw"
DEPEND="${RDEPEND}
- x11-proto/xproto"
+ x11-base/xorg-proto"
S="${WORKDIR}/${P}/src"
diff --git a/sci-biology/phylip/phylip-3.696-r2.ebuild b/sci-biology/phylip/phylip-3.696-r2.ebuild
index c19085ed6cf..b3488d65421 100644
--- a/sci-biology/phylip/phylip-3.696-r2.ebuild
+++ b/sci-biology/phylip/phylip-3.696-r2.ebuild
@@ -17,7 +17,7 @@ KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
RDEPEND="x11-libs/libXaw
!!dev-lang/elixir"
DEPEND="${RDEPEND}
- x11-proto/xproto"
+ x11-base/xorg-proto"
S="${WORKDIR}/${P}/src"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/phylip/
@ 2019-12-28 13:56 Ulrich Müller
0 siblings, 0 replies; 6+ messages in thread
From: Ulrich Müller @ 2019-12-28 13:56 UTC (permalink / raw
To: gentoo-commits
commit: 0039053a6be293c15066efaa73b6f0cba454e2f5
Author: Ulrich Müller <ulm <AT> gentoo <DOT> org>
AuthorDate: Sat Dec 28 13:55:08 2019 +0000
Commit: Ulrich Müller <ulm <AT> gentoo <DOT> org>
CommitDate: Sat Dec 28 13:56:18 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0039053a
sci-biology/phylip: Change LICENSE to "free-noncomm".
Closes: https://bugs.gentoo.org/702536
Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Ulrich Müller <ulm <AT> gentoo.org>
sci-biology/phylip/phylip-3.69-r1.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/phylip/phylip-3.69-r1.ebuild b/sci-biology/phylip/phylip-3.69-r1.ebuild
index 12f00781080..e54c75d9b35 100644
--- a/sci-biology/phylip/phylip-3.69-r1.ebuild
+++ b/sci-biology/phylip/phylip-3.69-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -10,7 +10,7 @@ HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
SLOT="0"
-LICENSE="freedist"
+LICENSE="free-noncomm"
IUSE=""
KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/phylip/
@ 2020-10-27 20:56 David Seifert
0 siblings, 0 replies; 6+ messages in thread
From: David Seifert @ 2020-10-27 20:56 UTC (permalink / raw
To: gentoo-commits
commit: 1f16dff22517a1d448e3d40e44621f2dd62c5c10
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Tue Oct 27 20:56:18 2020 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Tue Oct 27 20:56:18 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1f16dff2
sci-biology/phylip: Remove old
Closes: https://bugs.gentoo.org/707150
Closes: https://bugs.gentoo.org/727982
Package-Manager: Portage-3.0.8, Repoman-3.0.2
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/phylip/Manifest | 2 --
sci-biology/phylip/phylip-3.69-r1.ebuild | 51 ----------------------------
sci-biology/phylip/phylip-3.696-r1.ebuild | 54 ------------------------------
sci-biology/phylip/phylip-3.696-r2.ebuild | 55 -------------------------------
4 files changed, 162 deletions(-)
diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest
index 2f29996a668..444e3d45e35 100644
--- a/sci-biology/phylip/Manifest
+++ b/sci-biology/phylip/Manifest
@@ -1,3 +1 @@
-DIST phylip-3.69.tar.gz 1511935 BLAKE2B 76aa5a79d2553c6f269c011f633d1101ee4d85ac398a36dd463e5605d90833ecb1e5f6c21edba3e142e2d4ab5ef034fa739e52e0ab3f941a7987915ae352be0b SHA512 e36d12bfe597896b4298c1d0e3b0b7bd783573dc03e861b9472d8284391b2339cb3fb58eb6580298724bbd516127b68925815455514f939da9272fcfed7e229d
-DIST phylip-3.696.tar.gz 3955721 BLAKE2B dc75fc442eb63e44bc2e68e5dc97b3ff8f741bfa53740ed57ca114b53dcb71db9baeb9a96c3e693f7fae92afbaa71c7b5acfb39e7770bacb6aafa8c33b355be6 SHA512 711a9a34be72b0f63c746733cd1384f091b7cc597dbd9a40c130e074efbf0a0ecc30e5a6b3452bb73dc69cddbdae2fc07d1c0a68f0be207471eab73ab876c6be
DIST phylip-3.698.zip 9675991 BLAKE2B 8d020cf17b3245b9827af4bdd1d17167c3e1a41ae805766c4b72f09de107775314a2a296c00f84f928487403cc02741fd46ae73585d0dba143f4b926777e9add SHA512 7f822dabd1ffdb6a689e0c308f5a3ae129bd86e305086a18c0c755ac3c6ca28a4337d52ced76b280706926370e23f19f304851ef82e32833d1945ed277f7d70d
diff --git a/sci-biology/phylip/phylip-3.69-r1.ebuild b/sci-biology/phylip/phylip-3.69-r1.ebuild
deleted file mode 100644
index e54c75d9b35..00000000000
--- a/sci-biology/phylip/phylip-3.69-r1.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit toolchain-funcs
-
-DESCRIPTION=" The PHYLogeny Inference Package"
-HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
-SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="free-noncomm"
-IUSE=""
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos"
-
-RDEPEND="x11-libs/libXaw"
-DEPEND="${RDEPEND}
- x11-base/xorg-proto"
-
-S="${WORKDIR}/${P}/src"
-
-src_prepare() {
- sed \
- -e "s/CFLAGS = -O3 -fomit-frame-pointer/CFLAGS = ${CFLAGS}/" \
- -e "s/CC = cc/CC = $(tc-getCC)/" \
- -e "s/DC = cc/DC = $(tc-getCC)/" \
- -e "/ -o /s:\(\$(CC)\):\1 ${LDFLAGS}:g" \
- -i Makefile || die "Patching Makefile failed."
- mkdir ../fonts || die
-}
-
-src_compile() {
- emake -j1 all put
-}
-
-src_install() {
- cd "${WORKDIR}/${P}" || die
-
- mv exe/font* fonts || die "Font move failed."
- mv exe/factor exe/factor-${PN} || die "Renaming factor failed."
-
- dobin exe/*
-
- dodoc "${FILESDIR}"/README.Gentoo
-
- dohtml -r phylip.html doc
-
- insinto /usr/share/${PN}/
- doins -r fonts
-}
diff --git a/sci-biology/phylip/phylip-3.696-r1.ebuild b/sci-biology/phylip/phylip-3.696-r1.ebuild
deleted file mode 100644
index 85150acaf9c..00000000000
--- a/sci-biology/phylip/phylip-3.696-r1.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit toolchain-funcs
-
-DESCRIPTION=" The PHYLogeny Inference Package"
-HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
-SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD-2"
-IUSE=""
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
-
-RDEPEND="x11-libs/libXaw"
-DEPEND="${RDEPEND}
- x11-base/xorg-proto"
-
-S="${WORKDIR}/${P}/src"
-
-src_prepare() {
- mv Makefile.unx Makefile || die
- sed \
- -e "/ -o /s:\(\$(CC)\):\1 ${LDFLAGS}:g" \
- -i Makefile || die "Patching Makefile failed."
- mkdir ../fonts || die
-}
-
-src_compile() {
- emake -j1 \
- CC="$(tc-getCC)" \
- DC="$(tc-getCC)" \
- CFLAGS="${CFLAGS} -Wno-unused-result" \
- all put
-}
-
-src_install() {
- cd "${WORKDIR}/${P}" || die
-
- mv exe/font* fonts || die "Font move failed."
- mv exe/factor exe/factor-${PN} || die "Renaming factor failed."
-
- dolib.so exe/*so && rm exe/*so
- dobin exe/*
-
- dodoc "${FILESDIR}"/README.Gentoo
-
- dohtml -r phylip.html doc
-
- insinto /usr/share/${PN}/
- doins -r fonts
-}
diff --git a/sci-biology/phylip/phylip-3.696-r2.ebuild b/sci-biology/phylip/phylip-3.696-r2.ebuild
deleted file mode 100644
index 66391e0e662..00000000000
--- a/sci-biology/phylip/phylip-3.696-r2.ebuild
+++ /dev/null
@@ -1,55 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit toolchain-funcs
-
-DESCRIPTION=" The PHYLogeny Inference Package"
-HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
-SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD-2"
-IUSE=""
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
-# 'mix' tool collides with dev-lang/elixir, bug #537514
-RDEPEND="x11-libs/libXaw
- !!dev-lang/elixir"
-DEPEND="${RDEPEND}
- x11-base/xorg-proto"
-
-S="${WORKDIR}/${P}/src"
-
-src_prepare() {
- mv Makefile.unx Makefile || die
- sed \
- -e "/ -o /s:\(\$(CC)\):\1 ${LDFLAGS}:g" \
- -i Makefile || die "Patching Makefile failed."
- mkdir ../fonts || die
-}
-
-src_compile() {
- emake -j1 \
- CC="$(tc-getCC)" \
- DC="$(tc-getCC)" \
- CFLAGS="${CFLAGS} -Wno-unused-result" \
- all put
-}
-
-src_install() {
- cd "${WORKDIR}/${P}" || die
-
- mv exe/font* fonts || die "Font move failed."
- mv exe/factor exe/factor-${PN} || die "Renaming factor failed."
-
- dolib.so exe/*so && rm exe/*so
- dobin exe/*
-
- dodoc "${FILESDIR}"/README.Gentoo
-
- dohtml -r phylip.html doc
-
- insinto /usr/share/${PN}/
- doins -r fonts
-}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/phylip/
@ 2021-03-05 20:27 Sam James
0 siblings, 0 replies; 6+ messages in thread
From: Sam James @ 2021-03-05 20:27 UTC (permalink / raw
To: gentoo-commits
commit: 658f5dc4b42635c47749c20ac56b58b21b47105e
Author: Michael Mair-Keimberger <mmk <AT> levelnine <DOT> at>
AuthorDate: Fri Mar 5 12:49:50 2021 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Fri Mar 5 20:27:28 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=658f5dc4
sci-biology/phylip: remove whitespace
Package-Manager: Portage-3.0.15, Repoman-3.0.2
Signed-off-by: Michael Mair-Keimberger <mmk <AT> levelnine.at>
Closes: https://github.com/gentoo/gentoo/pull/19778
Signed-off-by: Sam James <sam <AT> gentoo.org>
sci-biology/phylip/phylip-3.698.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/phylip/phylip-3.698.ebuild b/sci-biology/phylip/phylip-3.698.ebuild
index 0a8ef8f815e..34bfd5699b0 100644
--- a/sci-biology/phylip/phylip-3.698.ebuild
+++ b/sci-biology/phylip/phylip-3.698.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit flag-o-matic toolchain-funcs
-DESCRIPTION=" The PHYLogeny Inference Package"
+DESCRIPTION="The PHYLogeny Inference Package"
HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.zip"
^ permalink raw reply related [flat|nested] 6+ messages in thread
end of thread, other threads:[~2021-03-05 20:27 UTC | newest]
Thread overview: 6+ messages (download: mbox.gz follow: Atom feed
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2015-12-07 7:15 Justin Lecher
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