From: "Jason Zaman" <perfinion@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-libs/scipy/
Date: Thu, 26 Dec 2019 02:42:25 +0000 (UTC) [thread overview]
Message-ID: <1577327699.13667ba3376f90ab5b236b1f60adf0079734f41d.perfinion@gentoo> (raw)
commit: 13667ba3376f90ab5b236b1f60adf0079734f41d
Author: Jason Zaman <perfinion <AT> gentoo <DOT> org>
AuthorDate: Wed Dec 25 10:36:40 2019 +0000
Commit: Jason Zaman <perfinion <AT> gentoo <DOT> org>
CommitDate: Thu Dec 26 02:34:59 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=13667ba3
sci-libs/scipy: bump 1.4.1
Package-Manager: Portage-2.3.79, Repoman-2.3.16
Signed-off-by: Jason Zaman <perfinion <AT> gentoo.org>
sci-libs/scipy/Manifest | 3 +
sci-libs/scipy/scipy-1.4.1.ebuild | 145 ++++++++++++++++++++++++++++++++++++++
2 files changed, 148 insertions(+)
diff --git a/sci-libs/scipy/Manifest b/sci-libs/scipy/Manifest
index 8e51ea760a6..755da305b08 100644
--- a/sci-libs/scipy/Manifest
+++ b/sci-libs/scipy/Manifest
@@ -13,3 +13,6 @@ DIST scipy-1.0.0.tar.gz 15246397 BLAKE2B 37cd50c59830c91f0516c72cf11b367670faf5c
DIST scipy-1.1.0-html.zip 49851258 BLAKE2B 528df7ed8aa8e56662f436f31ee9e1d6d72d6fe962f9f0f6f84b7a2704b53009ce333b2102ec73bb7795110f8a61b18246aab95b1e21055f2b68c0ff2225b7bb SHA512 a03894a22a67c1359ee6206e9e1c9de1f926a7f829f5039f161e78df735708da09b0e51cdad3bf36bfede701d0bc5dc44f8cc0f249b6bfb80c9d8c9fe23aed46
DIST scipy-1.1.0-ref.pdf 34360806 BLAKE2B f82807879d5d36d91d74e8983a0f4104bcb4b69cb7787fe5190f73fbbfcb8635a9399686b3c75736d3b0b5dd877b5280ff6fba728520e3b47c13ffc7835f8cd6 SHA512 c792064c986dffafa3c5d0741f30715028e655761d099f0fdd472270cf34642b367dfa2178ddceba13043a471e3aeb1db20d65308dbb40c704dab576aaadeb3e
DIST scipy-1.1.0.tar.gz 15583560 BLAKE2B 477753e622ee26a3bc8c2cb6829410152df84b29ce17a6d53a66348f5536f7993fedf5d32b782405b54b3af3feabf9bc91c381ed39546076849c2fdb71039404 SHA512 72fe32c6c009613cb78202598e5db14f8e630b3218839cfe18d43d40550d94cc5aa100c6f5d41f40e86ae148e9b6a13431bb91b0f9be44b0569ccd7b725fe973
+DIST scipy-1.4.1-html.zip 61414053 BLAKE2B e1f0c1a7a8941958512dcc3c0f40ef4a590bab0b44b33f842bc6e1c5d103c17f223d8b0a2f4e564f57645d601d4d74005c1ec605be2dd3bf4db19d2ac1f614d1 SHA512 9eeae83cd723d63aa1dc7a610ce3118cb68a2336be24cbfeaa8e57b34de413b2efa2fdad0978eb5bdac0ebca6b15f564b9509637efbd87d1007c969ae954e3ae
+DIST scipy-1.4.1-ref.pdf 41100747 BLAKE2B 8e56af69d0bffbe6eff73bfc5bb674aed3b80bdd80d59b58a1835f996c992306a059c2992d74c411e762490c526262753d33273613ed389928845c65eb6546b2 SHA512 76946f3b506fe22a595b70e5a418982257dd59db1a2e9af508cc1cab59d47ba4fc5951388e676f2a513043a6b3391ef853242e78d7feb99a6c21d19f6dca2b58
+DIST scipy-1.4.1.tar.gz 24555206 BLAKE2B e35f6234404839cbd24d463c8cc2f1ea66aed91534e700fd54a623df40d069b14fc220f96af04c78d13b773bfc5461559e59b0bd9b836d7953f9249ccd7cae54 SHA512 79407a2cbb4ba29c0941570181df4d7835e5791e50a3abef9b63c2fc5b15308a2e4964eb71cdebbee8cd2dcb8e497cf92fe50ee21fb12cac3013ea5e0466b25d
diff --git a/sci-libs/scipy/scipy-1.4.1.ebuild b/sci-libs/scipy/scipy-1.4.1.ebuild
new file mode 100644
index 00000000000..a655ea5de4a
--- /dev/null
+++ b/sci-libs/scipy/scipy-1.4.1.ebuild
@@ -0,0 +1,145 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python3_{5,6,7,8} )
+PYTHON_REQ_USE="threads(+)"
+
+DOC_PV=${PV}
+
+inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="https://www.scipy.org/"
+SRC_URI="
+ mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
+ doc? (
+ https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
+ https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
+ )"
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc sparse test"
+RESTRICT="!test? ( test )"
+KEYWORDS="~amd64 ~arm ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
+
+CDEPEND="
+ >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}]
+ sci-libs/arpack:0=
+ virtual/cblas
+ virtual/lapack
+ sparse? ( sci-libs/umfpack:0= )"
+DEPEND="${CDEPEND}
+ dev-lang/swig
+ >=dev-python/cython-0.29.13[${PYTHON_USEDEP}]
+ >=dev-python/setuptools-36[${PYTHON_USEDEP}]
+ dev-python/pybind11[${PYTHON_USEDEP}]
+ virtual/pkgconfig
+ doc? ( app-arch/unzip )
+ test? (
+ dev-python/nose[${PYTHON_USEDEP}]
+ dev-python/pytest[${PYTHON_USEDEP}]
+ )"
+RDEPEND="${CDEPEND}
+ dev-python/pillow[${PYTHON_USEDEP}]"
+
+DOCS=( HACKING.rst.txt THANKS.txt )
+
+DISTUTILS_IN_SOURCE_BUILD=1
+
+src_unpack() {
+ default
+ if use doc; then
+ unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
+ fi
+}
+
+pc_incdir() {
+ $(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+ sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libdir() {
+ $(tc-getPKG_CONFIG) --libs-only-L $@ | \
+ sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libs() {
+ $(tc-getPKG_CONFIG) --libs-only-l $@ | \
+ sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+ -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+ | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
+}
+
+python_prepare_all() {
+ # scipy automatically detects libraries by default
+ export {FFTW,FFTW3,UMFPACK}=None
+ use sparse && unset UMFPACK
+ # the missing symbols are in -lpythonX.Y, but since the version can
+ # differ, we just introduce the same scaryness as on Linux/ELF
+ [[ ${CHOST} == *-darwin* ]] \
+ && append-ldflags -bundle "-undefined dynamic_lookup" \
+ || append-ldflags -shared
+ [[ -z ${FC} ]] && export FC="$(tc-getFC)"
+ # hack to force F77 to be FC until bug #278772 is fixed
+ [[ -z ${F77} ]] && export F77="$(tc-getFC)"
+ export F90="${FC}"
+ export SCIPY_FCONFIG="config_fc --noopt --noarch"
+ append-fflags -fPIC
+
+ local libdir="${EPREFIX}"/usr/$(get_libdir)
+ cat >> site.cfg <<-EOF || die
+ [blas]
+ include_dirs = $(pc_incdir cblas)
+ library_dirs = $(pc_libdir cblas blas):${libdir}
+ blas_libs = $(pc_libs cblas blas)
+ [lapack]
+ library_dirs = $(pc_libdir lapack):${libdir}
+ lapack_libs = $(pc_libs lapack)
+ EOF
+
+ # Drop hashes to force rebuild of cython based .c code
+ rm cythonize.dat || die
+
+ distutils-r1_python_prepare_all
+}
+
+python_compile() {
+ # FIXME: parallel python building fails, bug #614464
+ # $(usex python_targets_python3_5 "" "-j $(makeopts_jobs)") \
+ ${EPYTHON} tools/cythonize.py || die
+ distutils-r1_python_compile \
+ ${SCIPY_FCONFIG}
+}
+
+python_test() {
+ # fails with bdist_egg. should it be fixed in distutils-r1 eclass?
+ distutils_install_for_testing ${SCIPY_FCONFIG}
+ cd "${TEST_DIR}" || die "no ${TEST_DIR} available"
+ "${PYTHON}" -c \
+ 'import numpy as np; print("relaxed strides checking:", np.ones((10,1),order="C").flags.f_contiguous)' \
+ || die
+ "${EPYTHON}" -c \
+ "import scipy, sys; r = scipy.test('fast', verbose=2); sys.exit(r)" \
+ || die "Tests fail with ${EPYTHON}"
+}
+
+python_install_all() {
+ use doc && \
+ local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \
+ local HTML_DOCS=( "${WORKDIR}"/html/. )
+ distutils-r1_python_install_all
+}
+
+python_install() {
+ distutils-r1_python_install ${SCIPY_FCONFIG}
+ python_optimize
+}
+
+pkg_postinst() {
+ elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
+ elog "to your prefered image viewer. Example:"
+ elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
+}
next reply other threads:[~2019-12-26 2:42 UTC|newest]
Thread overview: 43+ messages / expand[flat|nested] mbox.gz Atom feed top
2019-12-26 2:42 Jason Zaman [this message]
-- strict thread matches above, loose matches on Subject: below --
2020-08-02 12:03 [gentoo-commits] repo/gentoo:master commit in: sci-libs/scipy/ Michał Górny
2020-07-24 14:31 Michał Górny
2020-07-08 8:26 Michał Górny
2020-06-22 15:36 Michał Górny
2020-06-16 22:02 David Seifert
2020-06-10 8:11 Michał Górny
2020-06-10 7:37 Michał Górny
2020-06-07 21:03 Alexey Shvetsov
2020-06-05 13:13 Michał Górny
2020-06-05 10:55 Michał Górny
2020-06-05 10:55 Michał Górny
2020-05-13 10:08 Agostino Sarubbo
2020-05-12 14:47 Agostino Sarubbo
2020-03-07 15:11 Michał Górny
2020-01-27 20:54 Michał Górny
2020-01-27 18:18 Rick Farina
2020-01-27 4:59 Benda XU
2019-12-30 12:59 Michał Górny
2018-06-27 21:04 Pacho Ramos
2018-06-14 13:11 Alexey Shvetsov
2018-05-17 13:52 Thomas Deutschmann
2018-03-30 17:26 Sergei Trofimovich
2018-03-29 6:17 Sergei Trofimovich
2017-11-30 11:52 Marek Szuba
2017-07-04 17:43 Sebastien Fabbro
2017-06-28 4:02 Sebastien Fabbro
2017-05-20 9:52 Justin Lecher
2017-05-19 8:13 Justin Lecher
2017-03-19 12:45 David Seifert
2017-03-11 1:58 Zac Medico
2016-10-08 12:13 David Seifert
2016-03-16 11:51 Agostino Sarubbo
2016-02-14 10:11 Agostino Sarubbo
2016-01-29 9:09 Justin Lecher
2016-01-26 16:42 Agostino Sarubbo
2016-01-25 19:45 Justin Lecher
2016-01-25 19:45 Justin Lecher
2015-11-11 17:27 Justin Lecher
2015-10-31 10:25 Justin Lecher
2015-10-30 12:03 Justin Lecher
2015-10-29 8:20 Justin Lecher
2015-10-25 18:10 Justin Lecher
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=1577327699.13667ba3376f90ab5b236b1f60adf0079734f41d.perfinion@gentoo \
--to=perfinion@gentoo.org \
--cc=gentoo-commits@lists.gentoo.org \
--cc=gentoo-dev@lists.gentoo.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox