* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/rstudio/files/, sci-mathematics/rstudio/
@ 2019-12-20 17:53 David Seifert
0 siblings, 0 replies; 9+ messages in thread
From: David Seifert @ 2019-12-20 17:53 UTC (permalink / raw
To: gentoo-commits
commit: 81c6a4956dd1bfed76c9845066f5ab0db75475ce
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Fri Dec 20 17:53:44 2019 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Fri Dec 20 17:53:44 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=81c6a495
sci-mathematics/rstudio: Fix building with boost 1.72
Closes: https://bugs.gentoo.org/703124
Package-Manager: Portage-2.3.81, Repoman-2.3.20
Signed-off-by: David Seifert <soap <AT> gentoo.org>
.../rstudio/files/rstudio-1.0.44-systemd.patch | 8 +++---
.../rstudio-1.2.1335-boost-1.72-filesystem.patch | 31 ++++++++++++++++++++++
sci-mathematics/rstudio/rstudio-1.2.1335.ebuild | 23 ++++++++--------
3 files changed, 47 insertions(+), 15 deletions(-)
diff --git a/sci-mathematics/rstudio/files/rstudio-1.0.44-systemd.patch b/sci-mathematics/rstudio/files/rstudio-1.0.44-systemd.patch
index 7eafd4386ab..56601de5341 100644
--- a/sci-mathematics/rstudio/files/rstudio-1.0.44-systemd.patch
+++ b/sci-mathematics/rstudio/files/rstudio-1.0.44-systemd.patch
@@ -1,7 +1,7 @@
---- rstudio-1.0.44-orig/src/cpp/server/CMakeLists.txt 2016-10-19 08:32:41.000000000 +1100
-+++ rstudio-1.0.44/src/cpp/server/CMakeLists.txt 2016-12-02 11:11:45.259050839 +1100
-@@ -203,17 +203,12 @@
- DESTINATION ${RSERVER_UPSTART_DIR})
+--- a/src/cpp/server/CMakeLists.txt
++++ b/src/cpp/server/CMakeLists.txt
+@@ -232,17 +232,12 @@
+ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
# install configured systemd profile
- set(RSERVER_SYSTEMD_DIR "extras/systemd")
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch
new file mode 100644
index 00000000000..b2c4d2392f6
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch
@@ -0,0 +1,31 @@
+From a11d0454e5fe9c50005a03b9d9de84355df5c7fd Mon Sep 17 00:00:00 2001
+From: Kevin Ushey <kevinushey@gmail.com>
+Date: Fri, 15 Nov 2019 14:54:02 -0800
+Subject: [PATCH] avoid use of deprecated APIs
+
+---
+ src/cpp/core/FilePath.cpp | 4 +---
+ 1 file changed, 1 insertion(+), 3 deletions(-)
+
+diff --git a/src/cpp/shared_core/FilePath.cpp b/src/cpp/shared_core/FilePath.cpp
+index 088366a9d6..495289e7fc 100644
+--- a/src/cpp/core/FilePath.cpp
++++ b/src/cpp/core/FilePath.cpp
+@@ -22,8 +22,6 @@
+ #include <windows.h>
+ #endif
+
+-#define BOOST_FILESYSTEM_NO_DEPRECATED
+-
+ #define BOOST_NO_CXX11_SCOPED_ENUMS
+ #include <boost/filesystem.hpp>
+ #undef BOOST_NO_CXX11_SCOPED_ENUMS
+@@ -1032,7 +1030,7 @@
+ {
+ // NOTE: The path gets round-tripped through toString/fromString, would
+ // be nice to have a direct constructor
+- if (!iterationFunction(itr.level(),
++ if (!iterationFunction(itr.depth(),
+ FilePath(BOOST_FS_PATH2STR(itr->path()))))
+ {
+ // end the iteration if requested
diff --git a/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild b/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild
index 9d0dfd64d7d..2ba27bd5148 100644
--- a/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild
+++ b/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild
@@ -3,7 +3,7 @@
EAPI=7
-inherit eutils user cmake-utils gnome2-utils pam xdg-utils java-pkg-2 pax-utils qmake-utils
+inherit eutils user cmake-utils gnome2-utils pam xdg-utils java-pkg-2 pax-utils qmake-utils vcs-clean
# TODO
# * package gin and gwt
@@ -92,16 +92,17 @@ DEPEND="${RDEPEND}
# test? ( dev-java/junit:4 )
PATCHES=(
- "${FILESDIR}/${PN}-1.2.1335-prefs.patch"
- "${FILESDIR}/${PN}-1.2.1335-paths.patch"
- "${FILESDIR}/${PN}-1.2.1335-pandoc.patch"
- "${FILESDIR}/${PN}-1.2.1335-linker_flags.patch"
- "${FILESDIR}/${PN}-1.2.1335-qtsingleapplication.patch"
- "${FILESDIR}/${PN}-1.0.44-systemd.patch"
- "${FILESDIR}/${PN}-1.2.1335-core.patch"
- "${FILESDIR}/${PN}-1.2.1335-fix-ptr-int-compare.patch"
- "${FILESDIR}/${PN}-1.2.1335-boost-1.70.0_p1.patch"
- "${FILESDIR}/${PN}-1.2.1335-boost-1.70.0_p2.patch"
+ "${FILESDIR}"/${PN}-1.2.1335-prefs.patch
+ "${FILESDIR}"/${PN}-1.2.1335-paths.patch
+ "${FILESDIR}"/${PN}-1.2.1335-pandoc.patch
+ "${FILESDIR}"/${PN}-1.2.1335-linker_flags.patch
+ "${FILESDIR}"/${PN}-1.2.1335-qtsingleapplication.patch
+ "${FILESDIR}"/${PN}-1.0.44-systemd.patch
+ "${FILESDIR}"/${PN}-1.2.1335-core.patch
+ "${FILESDIR}"/${PN}-1.2.1335-fix-ptr-int-compare.patch
+ "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p1.patch
+ "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p2.patch
+ "${FILESDIR}"/${PN}-1.2.1335-boost-1.72-filesystem.patch
)
src_unpack() {
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/rstudio/files/, sci-mathematics/rstudio/
@ 2021-06-11 18:34 Pacho Ramos
0 siblings, 0 replies; 9+ messages in thread
From: Pacho Ramos @ 2021-06-11 18:34 UTC (permalink / raw
To: gentoo-commits
commit: f6bde9a800ea09a38d7e0fab20ee1379bf339a89
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 11 18:25:07 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Fri Jun 11 18:34:33 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f6bde9a8
sci-mathematics/rstudio: Fix build with boost-1.76.0
Thanks-to: Dmitry S. Kulyabov
Package-Manager: Portage-3.0.19, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
.../files/rstudio-1.3.1093-boost-1.76.patch | 55 ++++++++++++++++++++++
sci-mathematics/rstudio/rstudio-1.3.1093.ebuild | 2 +
2 files changed, 57 insertions(+)
diff --git a/sci-mathematics/rstudio/files/rstudio-1.3.1093-boost-1.76.patch b/sci-mathematics/rstudio/files/rstudio-1.3.1093-boost-1.76.patch
new file mode 100644
index 00000000000..5e832db2883
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.3.1093-boost-1.76.patch
@@ -0,0 +1,55 @@
+--- rstudio-1.3.1093-orig/src/cpp/r/session/RStdCallbacks.cpp
++++ rstudio-1.3.1093/src/cpp/r/session/RStdCallbacks.cpp
+@@ -19,7 +19,7 @@
+
+ #include <boost/function.hpp>
+ #include <boost/regex.hpp>
+-#include <boost/bind.hpp>
++#include <boost/bind/bind.hpp>
+
+ #include <r/RExec.hpp>
+ #include <r/ROptions.hpp>
+@@ -58,6 +58,7 @@ __declspec(dllimport) SA_TYPE SaveAction
+ }
+
+ using namespace rstudio::core;
++using namespace boost::placeholders;
+
+ namespace rstudio {
+ namespace r {
+--- rstudio-1.3.1093-orig/src/cpp/core/HtmlUtils.cpp.orig
++++ rstudio-1.3.1093/src/cpp/core/HtmlUtils.cpp
+@@ -19,13 +19,15 @@
+
+ #include <boost/format.hpp>
+ #include <boost/algorithm/string/predicate.hpp>
+-#include <boost/bind.hpp>
++#include <boost/bind/bind.hpp>
+
+ #include <core/Base64.hpp>
+ #include <core/FileSerializer.hpp>
+ #include <core/RegexUtils.hpp>
+
+ #include <core/http/Util.hpp>
++
++using namespace boost::placeholders;
+
+ namespace rstudio {
+ namespace core {
+--- rstudio-1.3.1093-orig/src/cpp/core/file_lock/FileLock.cpp.orig
++++ rstudio-1.3.1093/src/cpp/core/file_lock/FileLock.cpp
+@@ -26,10 +26,12 @@
+ #include <core/system/Environment.hpp>
+
+ #include <boost/algorithm/string.hpp>
+-#include <boost/bind.hpp>
++#include <boost/bind/bind.hpp>
+
+ // borrowed from SessionConstants.hpp
+ #define kRStudioSessionRoute "RSTUDIO_SESSION_ROUTE"
++
++using namespace boost::placeholders;
+
+ namespace rstudio {
+ namespace core {
+
\ No newline at end of file
diff --git a/sci-mathematics/rstudio/rstudio-1.3.1093.ebuild b/sci-mathematics/rstudio/rstudio-1.3.1093.ebuild
index 4fee0074c08..851ffef54c9 100644
--- a/sci-mathematics/rstudio/rstudio-1.3.1093.ebuild
+++ b/sci-mathematics/rstudio/rstudio-1.3.1093.ebuild
@@ -95,6 +95,7 @@ PATCHES=(
"${FILESDIR}"/${PN}-1.2.5042-boost-1.73.0.patch
"${FILESDIR}"/${PN}-1.3.1056-R-4.0.0.patch
"${FILESDIR}"/${PN}-1.3.1056-boost-1.74.0.patch
+ "${FILESDIR}"/${PN}-1.3.1093-boost-1.76.patch
)
src_unpack() {
@@ -177,6 +178,7 @@ src_configure() {
-DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")")
-DRSTUDIO_VERIFY_R_VERSION=FALSE
-DRSTUDIO_USE_SYSTEM_BOOST=TRUE
+ -DRSTUDIO_BOOST_SIGNALS_VERSION=2
)
if use !dedicated; then
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/rstudio/files/, sci-mathematics/rstudio/
@ 2021-06-11 18:34 Pacho Ramos
0 siblings, 0 replies; 9+ messages in thread
From: Pacho Ramos @ 2021-06-11 18:34 UTC (permalink / raw
To: gentoo-commits
commit: e3ca911b12cb1ec292f6d15535c0beef3faa0549
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 11 18:27:50 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Fri Jun 11 18:34:34 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e3ca911b
sci-mathematics/rstudio: Fix server startup scripts
Closes: https://bugs.gentoo.org/765856
Thanks-to: viktor.polak
Thanks-to: François Valenduc
Package-Manager: Portage-3.0.19, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-mathematics/rstudio/files/rstudio-server.initd | 6 +++++-
sci-mathematics/rstudio/files/rstudio-server.service.in | 1 +
.../rstudio/{rstudio-1.3.1093.ebuild => rstudio-1.3.1093-r1.ebuild} | 0
3 files changed, 6 insertions(+), 1 deletion(-)
diff --git a/sci-mathematics/rstudio/files/rstudio-server.initd b/sci-mathematics/rstudio/files/rstudio-server.initd
index caa7e46d5df..96c1e4f210c 100644
--- a/sci-mathematics/rstudio/files/rstudio-server.initd
+++ b/sci-mathematics/rstudio/files/rstudio-server.initd
@@ -1,7 +1,11 @@
#!/sbin/openrc-run
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
+depend() {
+ need net
+}
+
start() {
ebegin "Starting RStudio Server"
start-stop-daemon --start --quiet --exec /usr/bin/rserver
diff --git a/sci-mathematics/rstudio/files/rstudio-server.service.in b/sci-mathematics/rstudio/files/rstudio-server.service.in
index fb3e37305e0..08965a836a2 100644
--- a/sci-mathematics/rstudio/files/rstudio-server.service.in
+++ b/sci-mathematics/rstudio/files/rstudio-server.service.in
@@ -1,5 +1,6 @@
[Unit]
Description=RStudio Server
+After=network.target
[Service]
Type=forking
diff --git a/sci-mathematics/rstudio/rstudio-1.3.1093.ebuild b/sci-mathematics/rstudio/rstudio-1.3.1093-r1.ebuild
similarity index 100%
rename from sci-mathematics/rstudio/rstudio-1.3.1093.ebuild
rename to sci-mathematics/rstudio/rstudio-1.3.1093-r1.ebuild
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/rstudio/files/, sci-mathematics/rstudio/
@ 2020-05-24 5:04 Mark Wright
0 siblings, 0 replies; 9+ messages in thread
From: Mark Wright @ 2020-05-24 5:04 UTC (permalink / raw
To: gentoo-commits
commit: d6cbaf2df3b45b5a470ecca8cd7fedf56b074413
Author: Mark Wright <gienah <AT> gentoo <DOT> org>
AuthorDate: Sun May 24 05:03:52 2020 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Sun May 24 05:03:52 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d6cbaf2d
sci-mathematics/rstudio: Fix build with R 4.0.0
Thanks to Francois Valenduc for reporting.
Closes: https://bugs.gentoo.org/722850
Package-Manager: Portage-2.3.99, Repoman-2.3.22
Signed-off-by: Mark Wright <gienah <AT> gentoo.org>
.../rstudio/files/rstudio-1.2.5042-R-4.0.0.patch | 106 +++++++++++++++++++++
sci-mathematics/rstudio/rstudio-1.2.5033.ebuild | 1 +
sci-mathematics/rstudio/rstudio-1.2.5042.ebuild | 1 +
3 files changed, 108 insertions(+)
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.5042-R-4.0.0.patch b/sci-mathematics/rstudio/files/rstudio-1.2.5042-R-4.0.0.patch
new file mode 100644
index 00000000000..87ec83a7d4a
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.5042-R-4.0.0.patch
@@ -0,0 +1,106 @@
+From 71b1a935762efd24a79de193662450de5a89f67e Mon Sep 17 00:00:00 2001
+From: Jonathan McPherson <jonathan@rstudio.com>
+Date: Tue, 14 Jan 2020 12:53:20 -0800
+Subject: [PATCH] use R_NoSave over R_Slave for R 4.0+
+
+---
+ src/cpp/r/CMakeLists.txt | 12 ++++++++++++
+ src/cpp/r/config.h.in | 8 +++++++-
+ src/cpp/r/session/REmbeddedPosix.cpp | 20 ++++++++++++++------
+ 3 files changed, 33 insertions(+), 7 deletions(-)
+
+diff --git a/src/cpp/r/CMakeLists.txt b/src/cpp/r/CMakeLists.txt
+index 6984ae309c..29784b8b67 100644
+--- a/src/cpp/r/CMakeLists.txt
++++ b/src/cpp/r/CMakeLists.txt
+@@ -15,6 +15,18 @@
+
+ project (R)
+
++# find the version of R in play
++find_package(LibR REQUIRED)
++execute_process(
++ COMMAND "${LIBR_EXECUTABLE}" "--vanilla" "--slave" "-e" "cat(as.character(getRversion()))"
++ OUTPUT_VARIABLE LIBR_VERSION)
++
++# parse and save the R version to a variable
++string(REPLACE "." ";" R_VERSION_LIST "${LIBR_VERSION}")
++list(GET R_VERSION_LIST 0 R_VERSION_MAJOR)
++list(GET R_VERSION_LIST 1 R_VERSION_MINOR)
++list(GET R_VERSION_LIST 2 R_VERSION_PATCH)
++
+ # include files
+ file(GLOB_RECURSE R_HEADER_FILES "*.h*")
+
+diff --git a/src/cpp/r/config.h.in b/src/cpp/r/config.h.in
+index 6ba67c8e09..00bc8b6191 100644
+--- a/src/cpp/r/config.h.in
++++ b/src/cpp/r/config.h.in
+@@ -1,7 +1,7 @@
+ /*
+ * config.h.in
+ *
+- * Copyright (C) 2009-12 by RStudio, Inc.
++ * Copyright (C) 2009-20 by RStudio, Inc.
+ *
+ * Unless you have received this program directly from RStudio pursuant
+ * to the terms of a commercial license agreement with RStudio, then
+@@ -16,4 +16,10 @@
+
+ #cmakedefine PANGO_CAIRO_FOUND
+
++// Important: These variables represent the version of R found during
++// compile/link time, NOT the version of R present at runtime.
++#define R_VERSION_MAJOR ${R_VERSION_MAJOR}
++#define R_VERSION_MINOR ${R_VERSION_MINOR}
++#define R_VERSION_PATCH ${R_VERSION_PATCH}
++
+
+diff --git a/src/cpp/r/session/REmbeddedPosix.cpp b/src/cpp/r/session/REmbeddedPosix.cpp
+index ac71b94522..73e2e2ce7f 100644
+--- a/src/cpp/r/session/REmbeddedPosix.cpp
++++ b/src/cpp/r/session/REmbeddedPosix.cpp
+@@ -1,7 +1,7 @@
+ /*
+ * REmbeddedPosix.cpp
+ *
+- * Copyright (C) 2009-12 by RStudio, Inc.
++ * Copyright (C) 2009-20 by RStudio, Inc.
+ *
+ * Unless you have received this program directly from RStudio pursuant
+ * to the terms of a commercial license agreement with RStudio, then
+@@ -38,6 +38,8 @@ extern "C" void (*ptr_R_ProcessEvents)(void);
+ extern "C" typedef void (*ptr_QuartzCocoa_SetupEventLoop)(int, unsigned long);
+ #endif
+
++#include "config.h"
++
+ extern int R_running_as_main_program; // from unix/system.c
+
+ using namespace rstudio::core;
+@@ -103,14 +105,20 @@ void runEmbeddedR(const core::FilePath& /*rHome*/, // ignored on posix
+ //
+ structRstart rp;
+ Rstart Rp = &rp;
+- R_DefParams(Rp) ;
+- Rp->R_Slave = FALSE ;
++ R_DefParams(Rp);
++#if R_VERSION_MAJOR > 3
++ // R 4.0 and above use --no-echo to suppress output
++ Rp->R_NoEcho = FALSE;
++#else
++ // R 3.x and below use --slave
++ Rp->R_Slave = FALSE;
++#endif
+ Rp->R_Quiet = quiet ? TRUE : FALSE;
+- Rp->R_Interactive = TRUE ;
+- Rp->SaveAction = defaultSaveAction ;
++ Rp->R_Interactive = TRUE;
++ Rp->SaveAction = defaultSaveAction;
+ Rp->RestoreAction = SA_NORESTORE; // handled within initialize()
+ Rp->LoadInitFile = loadInitFile ? TRUE : FALSE;
+- R_SetParams(Rp) ;
++ R_SetParams(Rp);
+
+ // redirect console
+ R_Interactive = TRUE; // should have also been set by call to Rf_initialize_R
diff --git a/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild b/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild
index 77f9349a116..09ff6e9c516 100644
--- a/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild
+++ b/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild
@@ -100,6 +100,7 @@ PATCHES=(
"${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p1.patch
"${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p2.patch
"${FILESDIR}"/${PN}-1.2.5042-boost-1.73.0.patch
+ "${FILESDIR}"/${PN}-1.2.5042-R-4.0.0.patch
)
src_unpack() {
diff --git a/sci-mathematics/rstudio/rstudio-1.2.5042.ebuild b/sci-mathematics/rstudio/rstudio-1.2.5042.ebuild
index 4fadf59d2d1..6c4943d4513 100644
--- a/sci-mathematics/rstudio/rstudio-1.2.5042.ebuild
+++ b/sci-mathematics/rstudio/rstudio-1.2.5042.ebuild
@@ -100,6 +100,7 @@ PATCHES=(
"${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p1.patch
"${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p2.patch
"${FILESDIR}"/${PN}-1.2.5042-boost-1.73.0.patch
+ "${FILESDIR}"/${PN}-1.2.5042-R-4.0.0.patch
)
src_unpack() {
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/rstudio/files/, sci-mathematics/rstudio/
@ 2020-04-28 12:25 Mark Wright
0 siblings, 0 replies; 9+ messages in thread
From: Mark Wright @ 2020-04-28 12:25 UTC (permalink / raw
To: gentoo-commits
commit: 83f5ebaecb1e0351c10f988589fe2858259e6a85
Author: Mark Wright <gienah <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 28 12:23:49 2020 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Tue Apr 28 12:24:55 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=83f5ebae
sci-mathematics/rstudio: Bump to 1.2.5042
Package-Manager: Portage-2.3.99, Repoman-2.3.22
Signed-off-by: Mark Wright <gienah <AT> gentoo.org>
sci-mathematics/rstudio/Manifest | 1 +
.../files/rstudio-1.2.5042-boost-1.73.0.patch | 22 ++
sci-mathematics/rstudio/rstudio-1.2.5042.ebuild | 236 +++++++++++++++++++++
3 files changed, 259 insertions(+)
diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest
index 48c017368ef..314a334a3e7 100644
--- a/sci-mathematics/rstudio/Manifest
+++ b/sci-mathematics/rstudio/Manifest
@@ -10,6 +10,7 @@ DIST rsconnect_0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0.tar.gz 197051 BL
DIST rstudio-1.1.463.tar.gz 20203779 BLAKE2B 97f879539cbb7051af362a8469795a47feb42d18ff46dbbdffe36e0685d1cd5704848b3bf5a5611d482a09567722e35288527302cd521b18e2a48b347c919e17 SHA512 987347563a9726363c28d866e1372eae8eb19a5cbd0e33c7ee0e0c8f90471c4b69de0f559c00410523841b6c090b584652e01496f5db33c015a4554d2f4e179b
DIST rstudio-1.2.1335.tar.gz 20440199 BLAKE2B cdd54a7df5a234bcc6d440f4ba5b45e58ea469f8dac5a17d9088f9d65035495c86b5a308cde28a224648f96a74038299863291f3c516a1d567762ecc5bfb079c SHA512 90657effc55264bf3efa1a8a5d2bbe94a37727f0450202ade99b9fbb71ea75b6dd9fa798d17cd4d1a1a97a16f186de8004d1888b6ea43f36d5252508520d3cde
DIST rstudio-1.2.5033.tar.gz 20456976 BLAKE2B 3cbca6a5180690104dddf1456168bd38708d4152ed9b7a167035dd66e270aeb6405169d34461cbd899738be1872607e3f3b6f81ff0b3c9e6a9ed965a889b1393 SHA512 3569d4fed342275a9905c87e4f97be63b6391d2c37f75397e06201a7c31f80d94799214f51ff8e57d458ef18d5e54afe1ec8a7c56ac05ed8b8225ecca72d1daf
+DIST rstudio-1.2.5042.tar.gz 20456999 BLAKE2B 3251ab2511daefefa395256fedb273ecc36dbc8118457474e3647f7616baea91301e597896582ad4b191195fc7baf17645c4c25b9a957a0c17a6251151b1dd87 SHA512 e09f2360abecde0c16e240e6838efb270a355bec3d3982ffde2b01b32b21e9281fef465734edbfeb5e05375529cc7f06d5b5d41304f367982f53ae7ad98e20f9
DIST selenium-java-2.37.0.zip 24625928 BLAKE2B b369a805ae96f0d0913c4be42888d9c2a1e213ff982f9daefe73fadb705baa80ab0186ab50ed52609e83697cffaf8d617d06d75405cb8e1c3fe8e7c5b81dba25 SHA512 68624e82dbc751a25c50fad72702a98eb30d77fd4337d2a969f8e06bcc49e5f8c835cd27ec53772f3375014ddde1d5636936e966b75f3594a9f86aa18ba4e779
DIST selenium-server-standalone-2.37.0.jar 34730734 BLAKE2B 3899b1d4c5f9153c1f9f13bec66f7c1456ea2e0f34db7d8e54a1ce9063c33a05b3cf95216c2ae06bb40504f72f343a4b9ba6c8553fbbc340e7c18a5b612dde5c SHA512 b215446d42d2d1f69664349b6ae6dc53a532d3624c91254f0f4183d0ad764648792e5cc1126a55a1e60d9687d55200fed01d6d2f46cc3d853b1fa6ee38111018
DIST shinyapps-0.98.1000.tar.gz 910095 BLAKE2B 4f9364692348bb52cbd12cc6ee447841cb0c805327f2518b2a9545920b602b954a98dea68ccb3daf32d2c3bab6464fb15402844d93277193315f1ae7b3ca5190 SHA512 3162317c4c20cfc1497e952a8235867084d629ae88407e6c465b3e208adb1dc97abfe6b9922e0374ddf4c8e38a76e112942bd312c54a66f74e6f2a3fe4c0a07c
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.5042-boost-1.73.0.patch b/sci-mathematics/rstudio/files/rstudio-1.2.5042-boost-1.73.0.patch
new file mode 100644
index 00000000000..cd024e9ed91
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.5042-boost-1.73.0.patch
@@ -0,0 +1,22 @@
+--- rstudio-1.2.5042-orig/src/cpp/core/system/PosixChildProcessTracker.cpp 2020-04-02 03:16:24.000000000 +1100
++++ rstudio-1.2.5042/src/cpp/core/system/PosixChildProcessTracker.cpp 2020-04-28 15:36:44.839368084 +1000
+@@ -19,6 +19,8 @@
+
+ #include <boost/format.hpp>
+
++using namespace boost::placeholders;
++
+ namespace rstudio {
+ namespace core {
+ namespace system {
+--- rstudio-1.2.5042-orig/src/cpp/core/system/PosixOutputCapture.cpp 2020-04-02 03:16:24.000000000 +1100
++++ rstudio-1.2.5042/src/cpp/core/system/PosixOutputCapture.cpp 2020-04-28 15:35:50.869185435 +1000
+@@ -28,6 +28,8 @@
+
+ #include <core/system/System.hpp>
+
++using namespace boost::placeholders;
++
+ namespace rstudio {
+ namespace core {
+ namespace system {
diff --git a/sci-mathematics/rstudio/rstudio-1.2.5042.ebuild b/sci-mathematics/rstudio/rstudio-1.2.5042.ebuild
new file mode 100644
index 00000000000..2de83f6f633
--- /dev/null
+++ b/sci-mathematics/rstudio/rstudio-1.2.5042.ebuild
@@ -0,0 +1,236 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit eutils cmake-utils pam xdg-utils java-pkg-2 java-ant-2 pax-utils prefix qmake-utils vcs-clean
+
+# TODO
+# * use dict from tree, linguas
+# * do src_test (use junit from tree?)
+
+# update from scripts in dependencies/common
+# egrep '(GWT_SDK_VER=|GIN_VER=)' dependencies/common/install-gwt
+GWT_VER=2.8.1
+GIN_VER=2.1.2
+# grep 'PANDOC_VERSION=' dependencies/common/install-pandoc
+# It should be PANDOC_VER=2.3.1 however >=app-text/pandoc-2.3.1 is not yet in portage
+PANDOC_VER=1.19.2.1
+# grep -5 QT_CANDIDATES src/cpp/desktop/CMakeLists.txt
+QT_VER=5.10
+QT_SLOT=5
+
+DESCRIPTION="IDE for the R language"
+HOMEPAGE="
+ http://www.rstudio.org
+ https://github.com/rstudio/rstudio/"
+SRC_URI="
+ https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz
+ https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip
+"
+
+LICENSE="AGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="dedicated libressl server"
+
+RDEPEND="
+ >=app-text/pandoc-${PANDOC_VER}
+ dev-java/aopalliance:1
+ dev-java/gin:2.1
+ dev-java/gwt:2.8
+ dev-java/javax-inject
+ =dev-java/validation-api-1.0*:1.0[source]
+ dev-haskell/pandoc-citeproc
+ dev-lang/R
+ dev-libs/boost:=
+ >=dev-libs/mathjax-2.7.4
+ sys-apps/util-linux
+ sys-devel/clang:*
+ sys-libs/zlib
+ >=virtual/jre-1.8:=
+ x11-libs/pango
+ !dedicated? (
+ >=dev-qt/qtcore-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtdbus-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtgui-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtopengl-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtsingleapplication-2.6.1_p20150629[X,qt5(+)]
+ >=dev-qt/qtsensors-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtsql-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtsvg-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtwebchannel-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtwebengine-${QT_VER}:${QT_SLOT}[widgets]
+ >=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtxml-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT}
+ server? ( sys-libs/pam )
+ )
+ dedicated? ( sys-libs/pam )
+ dedicated? (
+ sys-libs/pam
+ acct-user/rstudio-server
+ acct-group/rstudio-server
+ )
+ server? (
+ acct-user/rstudio-server
+ acct-group/rstudio-server
+ )
+ !libressl? ( dev-libs/openssl:0= )
+ libressl? ( dev-libs/libressl:0= )"
+DEPEND="${RDEPEND}
+ app-arch/unzip
+ dev-java/ant-core
+ >=virtual/jdk-1.8:=
+ virtual/pkgconfig"
+# test? ( dev-java/junit:4 )
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-1.2.5033-prefs.patch
+ "${FILESDIR}"/${PN}-1.2.5033-paths.patch
+ "${FILESDIR}"/${PN}-1.2.5033-pandoc.patch
+ "${FILESDIR}"/${PN}-1.2.1335-linker_flags.patch
+ "${FILESDIR}"/${PN}-1.2.1335-qtsingleapplication.patch
+ "${FILESDIR}"/${PN}-1.0.44-systemd.patch
+ "${FILESDIR}"/${PN}-1.2.1335-core.patch
+ "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p1.patch
+ "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p2.patch
+ "${FILESDIR}"/${PN}-1.2.5042-boost-1.73.0.patch
+)
+
+src_unpack() {
+ unpack ${P}.tar.gz
+ cd "${S}" || die
+ mkdir -p dependencies/common/dictionaries
+ unzip -qd dependencies/common/dictionaries \
+ "${DISTDIR}"/core-dictionaries.zip || die
+}
+
+src_prepare() {
+ cmake-utils_src_prepare
+ java-pkg-2_src_prepare
+ egit_clean
+
+ # Enable CMake to install our .service file for systemd usage
+ mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die
+ cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die
+
+ # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
+ # this sed hack for now. ~RMH
+ sed -i \
+ -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \
+ src/cpp/server/ServerOptions.cpp \
+ src/cpp/session/SessionOptions.cpp || die
+
+ # use mathjax from system
+ ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-26 || die
+
+ # make sure icons and mime stuff are with prefix
+ sed -i \
+ -e "s:/usr:${EPREFIX}/usr:g" \
+ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die
+
+ # install themes in /etc/rstudio/extra/sthemes instead of /usr/extra/themes
+ sed -i \
+ -e "s@\(DESTINATION \"\)\(extras/themes\"\)@\1${EROOT}/etc/rstudio/\2@" \
+ src/cpp/server/CMakeLists.txt || die
+
+ # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf
+ sed -e "s@/etc/rstudio/rserver.conf@${EROOT}/etc/conf.d/rstudio-server.conf@" \
+ -i src/cpp/server/ServerOptions.cpp \
+ || die
+
+ # Set the rsession.conf file location for Gentoo prefix
+ sed -e "s@/etc/rstudio/rsession.conf@${EROOT}/etc/rstudio/rsession.conf@" \
+ -i src/cpp/session/SessionOptions.cpp \
+ || die
+
+ # dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module.
+ # It provides a library that has its version number appended to the end,
+ # which is difficult to handle in cmake, as find_library does not support
+ # searching for wildcard library names. So I find the library name from the
+ # qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt.
+ rm -rf "${S}"/src/cpp/desktop/3rdparty || die
+ local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \
+ $(qt5_get_mkspecsdir)/features/qtsingleapplication.prf \
+ | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \
+ -e 's@LIBS \*= -l@@')
+ sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \
+ -i "${S}"/src/cpp/desktop/CMakeLists.txt \
+ || die
+
+ # The git commit for tag: git rev-list -n 1 v${PV}
+ sed -e 's@git ARGS rev-parse HEAD@echo ARGS e4a1c219cbf6c10d9aec41461d80171ab3009bef@'\
+ -i "${S}"/CMakeLists.txt \
+ "${S}"/CMakeGlobals.txt \
+ || die
+
+ eprefixify src/gwt/build.xml
+}
+
+src_configure() {
+ export RSTUDIO_VERSION_MAJOR=$(ver_cut 1)
+ export RSTUDIO_VERSION_MINOR=$(ver_cut 2)
+ export RSTUDIO_VERSION_PATCH=$(ver_cut 3)
+
+ local mycmakeargs=(
+ -DDISTRO_SHARE=share/${PN}
+ -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")")
+ -DRSTUDIO_VERIFY_R_VERSION=FALSE
+ )
+
+ if use !dedicated; then
+ mycmakeargs+=(
+ -DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")"
+ -DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake
+ )
+ fi
+ cmake-utils_src_configure
+}
+
+src_compile() {
+ local JAVA_ANT_REWRITE_CLASSPATH="yes"
+ local EANT_BUILD_XML="src/gwt/build.xml"
+ local EANT_BUILD_TARGET="clean"
+ java-pkg-2_src_compile
+
+ # Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny
+ # P: /root/.oracle_jre_usage.
+ export ANT_OPTS="-Duser.home=${T}"
+ cmake-utils_src_compile
+}
+
+src_install() {
+ export ANT_OPTS="-Duser.home=${T}"
+ cmake-utils_src_install
+ use dedicated || pax-mark m "${ED}/usr/bin/rstudio"
+ doconfd "${FILESDIR}"/rstudio-server.conf
+ dodir /etc/rstudio
+ insinto /etc/rstudio
+ doins "${FILESDIR}"/rsession.conf
+ dosym ../conf.d/rstudio-server.conf /etc/rstudio/rserver.conf
+ if use dedicated || use server; then
+ dopamd src/cpp/server/extras/pam/rstudio
+ newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server
+ fi
+}
+
+pkg_preinst() {
+ java-pkg-2_pkg_preinst
+}
+
+pkg_postinst() {
+ use dedicated || { xdg_desktop_database_update
+ xdg_mimeinfo_database_update
+ xdg_icon_cache_update ;}
+}
+
+pkg_postrm() {
+ use dedicated || { xdg_desktop_database_update
+ xdg_mimeinfo_database_update
+ xdg_icon_cache_update ;}
+}
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/rstudio/files/, sci-mathematics/rstudio/
@ 2020-01-10 8:45 Mark Wright
0 siblings, 0 replies; 9+ messages in thread
From: Mark Wright @ 2020-01-10 8:45 UTC (permalink / raw
To: gentoo-commits
commit: 8c2e866221a19364bb608688acd0794ecf86c204
Author: Mark Wright <gienah <AT> gentoo <DOT> org>
AuthorDate: Fri Jan 10 08:42:28 2020 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Fri Jan 10 08:43:21 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8c2e8662
sci-mathematics/rstudio: Bump to 1.2.5033, use acct rstudio-server
Thanks to John Dough for reporting the version bump bug #702140.
Thanks to toralf for reporting bug #693662. The egit_clean: command not found
is fixed by inherit vcs-clean.
The QA: other
The ebuild is installing to one or more unexpected paths:
/usr/extras
is fixed with the sed under this comment:
# install themes in /etc/rstudio/extra/sthemes instead of /usr/extra/themes
The: One or more CMake variables were not used by the project:
QT_QMAKE_EXECUTABLE
RSTUDIO_INSTALL_FREEDESKTOP
is fixed by only setting these variables if use !dedicated.
Thanks to Alessandro Barbieri reporting bug #696944, the dependencies are
unbundled in rstudio 1.2.5033.ebuild, and some needless dependencies are
removed.
Closes: https://bugs.gentoo.org/show_bug.cgi?id=702140
Closes: https://bugs.gentoo.org/show_bug.cgi?id=693662
Closes: https://bugs.gentoo.org/show_bug.cgi?id=696944
Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Mark Wright <gienah <AT> gentoo.org>
sci-mathematics/rstudio/Manifest | 1 +
.../rstudio/files/rstudio-1.2.5033-pandoc.patch | 32 +++
.../rstudio/files/rstudio-1.2.5033-paths.patch | 118 +++++++++++
.../rstudio/files/rstudio-1.2.5033-prefs.patch | 83 ++++++++
sci-mathematics/rstudio/rstudio-1.2.5033.ebuild | 235 +++++++++++++++++++++
5 files changed, 469 insertions(+)
diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest
index 2c0bab41204..48c017368ef 100644
--- a/sci-mathematics/rstudio/Manifest
+++ b/sci-mathematics/rstudio/Manifest
@@ -9,6 +9,7 @@ DIST rmarkdown-0.98.1000.tar.gz 1423820 BLAKE2B eac8c9cf438c9b44ddfe954602dd67a8
DIST rsconnect_0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0.tar.gz 197051 BLAKE2B 1f3f9fe71d7b50ab5108dfdbd3cc0b882bcc935ee58e8a9145b07a18bb86c39bc45e321a13add24df99492bc30548df716775c339bcbf4efc2bfe158299ae55a SHA512 208dc349f4aa7613ecf94939aba60d22d3a06972344b526c9b6c951015571f5922927bca08db571a7b8a268e42609a4f558f01278c9685f6da2ffc66a1f95ade
DIST rstudio-1.1.463.tar.gz 20203779 BLAKE2B 97f879539cbb7051af362a8469795a47feb42d18ff46dbbdffe36e0685d1cd5704848b3bf5a5611d482a09567722e35288527302cd521b18e2a48b347c919e17 SHA512 987347563a9726363c28d866e1372eae8eb19a5cbd0e33c7ee0e0c8f90471c4b69de0f559c00410523841b6c090b584652e01496f5db33c015a4554d2f4e179b
DIST rstudio-1.2.1335.tar.gz 20440199 BLAKE2B cdd54a7df5a234bcc6d440f4ba5b45e58ea469f8dac5a17d9088f9d65035495c86b5a308cde28a224648f96a74038299863291f3c516a1d567762ecc5bfb079c SHA512 90657effc55264bf3efa1a8a5d2bbe94a37727f0450202ade99b9fbb71ea75b6dd9fa798d17cd4d1a1a97a16f186de8004d1888b6ea43f36d5252508520d3cde
+DIST rstudio-1.2.5033.tar.gz 20456976 BLAKE2B 3cbca6a5180690104dddf1456168bd38708d4152ed9b7a167035dd66e270aeb6405169d34461cbd899738be1872607e3f3b6f81ff0b3c9e6a9ed965a889b1393 SHA512 3569d4fed342275a9905c87e4f97be63b6391d2c37f75397e06201a7c31f80d94799214f51ff8e57d458ef18d5e54afe1ec8a7c56ac05ed8b8225ecca72d1daf
DIST selenium-java-2.37.0.zip 24625928 BLAKE2B b369a805ae96f0d0913c4be42888d9c2a1e213ff982f9daefe73fadb705baa80ab0186ab50ed52609e83697cffaf8d617d06d75405cb8e1c3fe8e7c5b81dba25 SHA512 68624e82dbc751a25c50fad72702a98eb30d77fd4337d2a969f8e06bcc49e5f8c835cd27ec53772f3375014ddde1d5636936e966b75f3594a9f86aa18ba4e779
DIST selenium-server-standalone-2.37.0.jar 34730734 BLAKE2B 3899b1d4c5f9153c1f9f13bec66f7c1456ea2e0f34db7d8e54a1ce9063c33a05b3cf95216c2ae06bb40504f72f343a4b9ba6c8553fbbc340e7c18a5b612dde5c SHA512 b215446d42d2d1f69664349b6ae6dc53a532d3624c91254f0f4183d0ad764648792e5cc1126a55a1e60d9687d55200fed01d6d2f46cc3d853b1fa6ee38111018
DIST shinyapps-0.98.1000.tar.gz 910095 BLAKE2B 4f9364692348bb52cbd12cc6ee447841cb0c805327f2518b2a9545920b602b954a98dea68ccb3daf32d2c3bab6464fb15402844d93277193315f1ae7b3ca5190 SHA512 3162317c4c20cfc1497e952a8235867084d629ae88407e6c465b3e208adb1dc97abfe6b9922e0374ddf4c8e38a76e112942bd312c54a66f74e6f2a3fe4c0a07c
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.5033-pandoc.patch b/sci-mathematics/rstudio/files/rstudio-1.2.5033-pandoc.patch
new file mode 100644
index 00000000000..b4f611063e1
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.5033-pandoc.patch
@@ -0,0 +1,32 @@
+--- rstudio-1.2.5033-orig/src/cpp/session/CMakeLists.txt 2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/src/cpp/session/CMakeLists.txt 2020-01-07 12:29:20.174304185 +1100
+@@ -25,9 +25,6 @@
+ if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-26")
+ message(FATAL_ERROR "Mathjax 2.6 not found (re-run install-dependencies script to install)")
+ endif()
+-if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc")
+- message(FATAL_ERROR "pandoc not found (re-run install-dependencies script to install)")
+-endif()
+
+ # we often install embedded versions of these packages but don't do so currently
+
+@@ -490,19 +487,6 @@
+ install(DIRECTORY "resources/connections"
+ DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources)
+
+- # install pandoc
+- if(WIN32)
+- set(PANDOC_VERSION "2.7.2" CACHE INTERNAL "Pandoc version")
+- else()
+- set(PANDOC_VERSION "2.3.1" CACHE INTERNAL "Pandoc version")
+- endif()
+-
+- set(PANDOC_BIN "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc/${PANDOC_VERSION}")
+- file(GLOB PANDOC_FILES "${PANDOC_BIN}/pandoc*")
+- install(FILES ${PANDOC_FILES}
+- PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+- DESTINATION ${RSTUDIO_INSTALL_BIN}/pandoc)
+-
+ # install rmarkdown package
+ # file(GLOB RMARKDOWN_PACKAGE "${RSTUDIO_DEPENDENCIES_DIR}/common/rmarkdown*.tar.gz")
+ # install(FILES ${RMARKDOWN_PACKAGE}
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.5033-paths.patch b/sci-mathematics/rstudio/files/rstudio-1.2.5033-paths.patch
new file mode 100644
index 00000000000..aa6a9b23fde
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.5033-paths.patch
@@ -0,0 +1,118 @@
+--- rstudio-1.2.5033-orig/CMakeGlobals.txt 2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/CMakeGlobals.txt 2020-01-07 12:20:19.115307754 +1100
+@@ -175,7 +175,7 @@
+ else()
+ set(RSTUDIO_INSTALL_BIN bin)
+ endif()
+- set(RSTUDIO_INSTALL_SUPPORTING .)
++ set(RSTUDIO_INSTALL_SUPPORTING ${DISTRO_SHARE})
+ endif()
+
+ # if the install prefix is /usr/local then tweak as appropriate
+--- rstudio-1.2.5033-orig/src/cpp/server/CMakeLists.txt 2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/src/cpp/server/CMakeLists.txt 2020-01-07 12:17:32.736309024 +1100
+@@ -194,7 +194,7 @@
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT})
+ install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}
+- DESTINATION ${RSERVER_INITD_DEBIAN_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_DEBIAN_DIR})
+
+ # install configured redhat init.d script
+ set(RSERVER_INITD_REDHAT_DIR "extras/init.d/redhat")
+@@ -202,7 +202,7 @@
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT})
+ install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}
+- DESTINATION ${RSERVER_INITD_REDHAT_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_REDHAT_DIR})
+
+ # install configured suse init.d script
+ set(RSERVER_INITD_SUSE_DIR "extras/init.d/suse")
+@@ -210,13 +210,13 @@
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_SUSE_SCRIPT}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT})
+ install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT}
+- DESTINATION ${RSERVER_INITD_SUSE_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_SUSE_DIR})
+
+ # install pam profile
+ set(RSERVER_PAM_DIR "extras/pam")
+ set(RSERVER_PAM_PROFILE "${RSERVER_PAM_DIR}/rstudio")
+ install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_PAM_PROFILE}
+- DESTINATION ${RSERVER_PAM_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_PAM_DIR})
+
+ # install configured upstart profile
+ set(RSERVER_UPSTART_DIR "extras/upstart")
+@@ -224,12 +224,12 @@
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE})
+ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE}
+- DESTINATION ${RSERVER_UPSTART_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
+ set(RSERVER_UPSTART_PROFILE_REDHAT "${RSERVER_UPSTART_DIR}/rstudio-server.redhat.conf")
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT})
+ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}
+- DESTINATION ${RSERVER_UPSTART_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
+
+ # install configured systemd profile
+ set(RSERVER_SYSTEMD_DIR "extras/systemd")
+--- rstudio-1.2.5033-orig/src/cpp/server/ServerOptions.cpp 2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/src/cpp/server/ServerOptions.cpp 2020-01-07 12:17:32.773309023 +1100
+@@ -389,8 +389,8 @@
+
+ // convert relative paths by completing from the system installation
+ // path (this allows us to be relocatable)
+- resolvePath(resourcePath, &wwwLocalPath_);
+- resolvePath(resourcePath, &wwwSymbolMapsPath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwLocalPath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
+ resolvePath(binaryPath, &authPamHelperPath_);
+ resolvePath(binaryPath, &rsessionPath_);
+ resolvePath(binaryPath, &rldpathPath_);
+--- rstudio-1.2.5033-orig/src/cpp/session/SessionOptions.cpp 2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/src/cpp/session/SessionOptions.cpp 2020-01-07 12:17:32.774309023 +1100
+@@ -53,7 +53,7 @@
+ namespace session {
+
+ namespace {
+-const char* const kDefaultPandocPath = "bin/pandoc";
++const char* const kDefaultPandocPath = "bin";
+ const char* const kDefaultPostbackPath = "bin/postback/rpostback";
+ const char* const kDefaultRsclangPath = "bin/rsclang";
+
+@@ -571,14 +571,14 @@
+ }
+
+ // convert relative paths by completing from the app resource path
+- resolvePath(resourcePath_, &rResourcesPath_);
+- resolvePath(resourcePath_, &agreementFilePath_);
+- resolvePath(resourcePath_, &wwwLocalPath_);
+- resolvePath(resourcePath_, &wwwSymbolMapsPath_);
+- resolvePath(resourcePath_, &coreRSourcePath_);
+- resolvePath(resourcePath_, &modulesRSourcePath_);
+- resolvePath(resourcePath_, &sessionLibraryPath_);
+- resolvePath(resourcePath_, &sessionPackageArchivesPath_);
++ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &rResourcesPath_);
++ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &agreementFilePath_);
++ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwLocalPath_);
++ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
++ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &coreRSourcePath_);
++ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &modulesRSourcePath_);
++ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionLibraryPath_);
++ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionPackageArchivesPath_);
+ resolvePostbackPath(resourcePath_, &rpostbackPath_);
+ #ifdef _WIN32
+ resolvePath(resourcePath_, &consoleIoPath_);
+@@ -611,7 +611,7 @@
+ }
+ winptyPath_ = pty.complete(completion).absolutePath();
+ #endif // _WIN32
+- resolvePath(resourcePath_, &hunspellDictionariesPath_);
++ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &hunspellDictionariesPath_);
+ resolvePath(resourcePath_, &mathjaxPath_);
+ resolvePath(resourcePath_, &libclangHeadersPath_);
+ resolvePandocPath(resourcePath_, &pandocPath_);
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.5033-prefs.patch b/sci-mathematics/rstudio/files/rstudio-1.2.5033-prefs.patch
new file mode 100644
index 00000000000..034eba37a8b
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.5033-prefs.patch
@@ -0,0 +1,83 @@
+--- rstudio-1.2.5033-orig/src/gwt/build.xml 2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/src/gwt/build.xml 2020-01-10 18:35:29.913030923 +1100
+@@ -28,17 +28,35 @@
+ classname="com.google.javascript.jscomp.ant.CompileTask"
+ classpath="${tools.dir}/compiler/compiler.jar"/>
+
++ <!-- Configure path to aopalliance -->
++ <property name="aopalliance.sdk" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/aopalliance-1/lib"/>
++
++ <!-- Configure path to javax-inject -->
++ <property name="javax.inject" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/javax-inject/lib"/>
++
++ <!-- Configure path to validation-api -->
++ <property name="validation.api" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/validation-api-1.0/lib"/>
++ <property name="validation.api.sources" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/validation-api-1.0/sources"/>
++
+ <!-- Configure path to GWT SDK -->
+- <property name="gwt.sdk" value="${lib.dir}/gwt/2.8.1"/>
++ <property name="gwt.sdk" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/gwt-2.8/lib"/>
++
++ <!-- Configure path to Google Gin -->
++ <property name="gin.sdk" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/gin-2.1/lib"/>
+
+ <property name="gwt.extra.args" value=""/>
+ <property name="gwt.main.module" value="org.rstudio.studio.RStudio"/>
+ <property name="ace.bin" value="${src.dir}/org/rstudio/studio/client/workbench/views/source/editors/text/ace"/>
++ <property environment="env"/>
+
+ <path id="project.class.path">
+ <pathelement location="${build.dir}"/>
++ <fileset dir="${aopalliance.sdk}" includes="*.jar"/>
++ <fileset dir="${javax.inject}" includes="*.jar"/>
++ <fileset dir="${validation.api}" includes="*.jar"/>
++ <fileset dir="${validation.api.sources}" includes="*.zip"/>
+ <fileset dir="${gwt.sdk}" includes="*.jar"/>
+- <fileset dir="${lib.dir}/gin/2.1.2" includes="*.jar"/>
++ <fileset dir="${gin.sdk}" includes="*.jar"/>
+ </path>
+
+ <path id="test.class.path">
+@@ -112,8 +130,10 @@
+ <pathelement location="${src.dir}"/>
+ <path refid="project.class.path"/>
+ </classpath>
++ <jvmarg value="-Duser.home=${env.T}"/>
+ <!-- add jvmarg -Xss16M or similar if you see a StackOverflowError -->
+ <jvmarg value="-Xmx1536M"/>
++ <jvmarg value="-Djava.util.prefs.userRoot=${env.T}"/>
+ <arg value="-war"/>
+ <arg value="${www.dir}"/>
+ <arg value="-localWorkers"/>
+@@ -154,6 +174,7 @@
+ <pathelement location="${src.dir}"/>
+ <path refid="project.class.path"/>
+ </classpath>
++ <jvmarg value="-Duser.home=${env.T}"/>
+ <jvmarg value="-Xmx2048M"/>
+ <arg value="-style"/>
+ <arg value="PRETTY"/>
+@@ -176,6 +197,7 @@
+ <pathelement location="src"/>
+ <path refid="project.class.path"/>
+ </classpath>
++ <jvmarg value="-Duser.home=${env.T}"/>
+ <jvmarg value="-Xmx2048M"/>
+ <arg value="-style"/>
+ <arg value="PRETTY"/>
+@@ -202,6 +224,7 @@
+ <pathelement location="src"/>
+ <path refid="project.class.path"/>
+ </classpath>
++ <jvmarg value="-Duser.home=${env.T}"/>
+ <jvmarg value="-Xmx2048M"/>
+ <arg value="-src"/>
+ <arg value = "src"/>
+@@ -237,6 +260,7 @@
+ <pathelement location="${test.dir}"/>
+ <pathelement location="${src.dir}"/>
+ </classpath>
++ <jvmarg value="-Duser.home=${env.T}"/>
+ <classpath refid="project.class.path"/>
+ <classpath refid="unittest.class.path"/>
+ <arg value="org.rstudio.studio.client.RStudioUnitTestSuite"/>
diff --git a/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild b/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild
new file mode 100644
index 00000000000..88b8f9d905b
--- /dev/null
+++ b/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild
@@ -0,0 +1,235 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit eutils cmake-utils pam xdg-utils java-pkg-2 java-ant-2 pax-utils prefix qmake-utils vcs-clean
+
+# TODO
+# * use dict from tree, linguas
+# * do src_test (use junit from tree?)
+
+# update from scripts in dependencies/common
+# egrep '(GWT_SDK_VER=|GIN_VER=)' dependencies/common/install-gwt
+GWT_VER=2.8.1
+GIN_VER=2.1.2
+# grep 'PANDOC_VERSION=' dependencies/common/install-pandoc
+# It should be PANDOC_VER=2.3.1 however >=app-text/pandoc-2.3.1 is not yet in portage
+PANDOC_VER=1.19.2.1
+# grep -5 QT_CANDIDATES src/cpp/desktop/CMakeLists.txt
+QT_VER=5.10
+QT_SLOT=5
+
+DESCRIPTION="IDE for the R language"
+HOMEPAGE="
+ http://www.rstudio.org
+ https://github.com/rstudio/rstudio/"
+SRC_URI="
+ https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz
+ https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip
+"
+
+LICENSE="AGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="dedicated libressl server"
+
+RDEPEND="
+ >=app-text/pandoc-${PANDOC_VER}
+ dev-java/aopalliance:1
+ dev-java/gin:2.1
+ dev-java/gwt:2.8
+ dev-java/javax-inject
+ =dev-java/validation-api-1.0*:1.0[source]
+ dev-haskell/pandoc-citeproc
+ dev-lang/R
+ dev-libs/boost:=
+ >=dev-libs/mathjax-2.7.4
+ sys-apps/util-linux
+ sys-devel/clang:*
+ sys-libs/zlib
+ >=virtual/jre-1.8:=
+ x11-libs/pango
+ !dedicated? (
+ >=dev-qt/qtcore-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtdbus-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtgui-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtopengl-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtsingleapplication-2.6.1_p20150629[X,qt5(+)]
+ >=dev-qt/qtsensors-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtsql-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtsvg-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtwebchannel-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtwebengine-${QT_VER}:${QT_SLOT}[widgets]
+ >=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtxml-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT}
+ server? ( sys-libs/pam )
+ )
+ dedicated? ( sys-libs/pam )
+ dedicated? (
+ sys-libs/pam
+ acct-user/rstudio-server
+ acct-group/rstudio-server
+ )
+ server? (
+ acct-user/rstudio-server
+ acct-group/rstudio-server
+ )
+ !libressl? ( dev-libs/openssl:0= )
+ libressl? ( dev-libs/libressl:0= )"
+DEPEND="${RDEPEND}
+ app-arch/unzip
+ dev-java/ant-core
+ >=virtual/jdk-1.8:=
+ virtual/pkgconfig"
+# test? ( dev-java/junit:4 )
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-1.2.5033-prefs.patch
+ "${FILESDIR}"/${PN}-1.2.5033-paths.patch
+ "${FILESDIR}"/${PN}-1.2.5033-pandoc.patch
+ "${FILESDIR}"/${PN}-1.2.1335-linker_flags.patch
+ "${FILESDIR}"/${PN}-1.2.1335-qtsingleapplication.patch
+ "${FILESDIR}"/${PN}-1.0.44-systemd.patch
+ "${FILESDIR}"/${PN}-1.2.1335-core.patch
+ "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p1.patch
+ "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p2.patch
+)
+
+src_unpack() {
+ unpack ${P}.tar.gz
+ cd "${S}" || die
+ mkdir -p dependencies/common/dictionaries
+ unzip -qd dependencies/common/dictionaries \
+ "${DISTDIR}"/core-dictionaries.zip || die
+}
+
+src_prepare() {
+ cmake-utils_src_prepare
+ java-pkg-2_src_prepare
+ egit_clean
+
+ # Enable CMake to install our .service file for systemd usage
+ mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die
+ cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die
+
+ # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
+ # this sed hack for now. ~RMH
+ sed -i \
+ -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \
+ src/cpp/server/ServerOptions.cpp \
+ src/cpp/session/SessionOptions.cpp || die
+
+ # use mathjax from system
+ ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-26 || die
+
+ # make sure icons and mime stuff are with prefix
+ sed -i \
+ -e "s:/usr:${EPREFIX}/usr:g" \
+ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die
+
+ # install themes in /etc/rstudio/extra/sthemes instead of /usr/extra/themes
+ sed -i \
+ -e "s@\(DESTINATION \"\)\(extras/themes\"\)@\1${EROOT}/etc/rstudio/\2@" \
+ src/cpp/server/CMakeLists.txt || die
+
+ # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf
+ sed -e "s@/etc/rstudio/rserver.conf@${EROOT}/etc/conf.d/rstudio-server.conf@" \
+ -i src/cpp/server/ServerOptions.cpp \
+ || die
+
+ # Set the rsession.conf file location for Gentoo prefix
+ sed -e "s@/etc/rstudio/rsession.conf@${EROOT}/etc/rstudio/rsession.conf@" \
+ -i src/cpp/session/SessionOptions.cpp \
+ || die
+
+ # dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module.
+ # It provides a library that has its version number appended to the end,
+ # which is difficult to handle in cmake, as find_library does not support
+ # searching for wildcard library names. So I find the library name from the
+ # qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt.
+ rm -rf "${S}"/src/cpp/desktop/3rdparty || die
+ local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \
+ $(qt5_get_mkspecsdir)/features/qtsingleapplication.prf \
+ | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \
+ -e 's@LIBS \*= -l@@')
+ sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \
+ -i "${S}"/src/cpp/desktop/CMakeLists.txt \
+ || die
+
+ # The git commit for tag: git rev-list -n 1 v${PV}
+ sed -e 's@git ARGS rev-parse HEAD@echo ARGS 6871a99b32add885fe6fa3d50fe15f62346142e7@'\
+ -i "${S}"/CMakeLists.txt \
+ "${S}"/CMakeGlobals.txt \
+ || die
+
+ eprefixify src/gwt/build.xml
+}
+
+src_configure() {
+ export RSTUDIO_VERSION_MAJOR=$(ver_cut 1)
+ export RSTUDIO_VERSION_MINOR=$(ver_cut 2)
+ export RSTUDIO_VERSION_PATCH=$(ver_cut 3)
+
+ local mycmakeargs=(
+ -DDISTRO_SHARE=share/${PN}
+ -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")")
+ -DRSTUDIO_VERIFY_R_VERSION=FALSE
+ )
+
+ if use !dedicated; then
+ mycmakeargs+=(
+ -DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")"
+ -DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake
+ )
+ fi
+ cmake-utils_src_configure
+}
+
+src_compile() {
+ local JAVA_ANT_REWRITE_CLASSPATH="yes"
+ local EANT_BUILD_XML="src/gwt/build.xml"
+ local EANT_BUILD_TARGET="clean"
+ java-pkg-2_src_compile
+
+ # Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny
+ # P: /root/.oracle_jre_usage.
+ export ANT_OPTS="-Duser.home=${T}"
+ cmake-utils_src_compile
+}
+
+src_install() {
+ export ANT_OPTS="-Duser.home=${T}"
+ cmake-utils_src_install
+ use dedicated || pax-mark m "${ED}/usr/bin/rstudio"
+ doconfd "${FILESDIR}"/rstudio-server.conf
+ dodir /etc/rstudio
+ insinto /etc/rstudio
+ doins "${FILESDIR}"/rsession.conf
+ dosym ../conf.d/rstudio-server.conf /etc/rstudio/rserver.conf
+ if use dedicated || use server; then
+ dopamd src/cpp/server/extras/pam/rstudio
+ newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server
+ fi
+}
+
+pkg_preinst() {
+ java-pkg-2_pkg_preinst
+}
+
+pkg_postinst() {
+ use dedicated || { xdg_desktop_database_update
+ xdg_mimeinfo_database_update
+ xdg_icon_cache_update ;}
+}
+
+pkg_postrm() {
+ use dedicated || { xdg_desktop_database_update
+ xdg_mimeinfo_database_update
+ xdg_icon_cache_update ;}
+}
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/rstudio/files/, sci-mathematics/rstudio/
@ 2016-01-29 4:59 Mark Wright
0 siblings, 0 replies; 9+ messages in thread
From: Mark Wright @ 2016-01-29 4:59 UTC (permalink / raw
To: gentoo-commits
commit: 53d873715b54186cbcced5c32bfdd8380a4a1508
Author: Matthew Brewer <tomboy64 <AT> sina <DOT> cn>
AuthorDate: Fri Jan 29 04:17:47 2016 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Fri Jan 29 04:17:47 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=53d87371
sci-mathematics/rstudio: install systemd service unit for rstudio-server into proper directory (bug #534152)
Package-Manager: portage-2.2.26
RepoMan-Options: --ignore-arches
.../rstudio/files/rstudio-0.99.486-systemd.patch | 22 ++++++++++++++++++++++
.../rstudio/files/rstudio-server.service.in | 10 ++++++++++
...-0.99.486.ebuild => rstudio-0.99.486-r1.ebuild} | 7 ++++++-
3 files changed, 38 insertions(+), 1 deletion(-)
diff --git a/sci-mathematics/rstudio/files/rstudio-0.99.486-systemd.patch b/sci-mathematics/rstudio/files/rstudio-0.99.486-systemd.patch
new file mode 100644
index 0000000..4c7eda3
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-0.99.486-systemd.patch
@@ -0,0 +1,22 @@
+diff -Naur /tmp/rstudio.org/work/rstudio-0.99.486/src/cpp/server/CMakeLists.txt ./work/rstudio-0.99.486/src/cpp/server/CMakeLists.txt
+--- /tmp/rstudio.org/work/rstudio-0.99.486/src/cpp/server/CMakeLists.txt 2015-12-10 19:29:24.408267862 +0100
++++ ./work/rstudio-0.99.486/src/cpp/server/CMakeLists.txt 2015-12-10 19:35:24.660194216 +0100
+@@ -208,17 +208,12 @@
+ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
+
+ # install configured systemd profile
+- set(RSERVER_SYSTEMD_DIR "extras/systemd")
++ set(RSERVER_SYSTEMD_DIR "lib/systemd/system")
+ set(RSERVER_SYSTEMD_PROFILE "${RSERVER_SYSTEMD_DIR}/rstudio-server.service")
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_SYSTEMD_PROFILE}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_SYSTEMD_PROFILE})
+ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_SYSTEMD_PROFILE}
+ DESTINATION ${RSERVER_SYSTEMD_DIR})
+- set(RSERVER_SYSTEMD_PROFILE_REDHAT "${RSERVER_SYSTEMD_DIR}/rstudio-server.redhat.service")
+- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_SYSTEMD_PROFILE_REDHAT}.in
+- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_SYSTEMD_PROFILE_REDHAT})
+- install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_SYSTEMD_PROFILE_REDHAT}
+- DESTINATION ${RSERVER_SYSTEMD_DIR})
+
+ endif()
+
diff --git a/sci-mathematics/rstudio/files/rstudio-server.service.in b/sci-mathematics/rstudio/files/rstudio-server.service.in
new file mode 100644
index 0000000..fb3e373
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-server.service.in
@@ -0,0 +1,10 @@
+[Unit]
+Description=RStudio Server
+
+[Service]
+Type=forking
+ExecStart=${CMAKE_INSTALL_PREFIX}/bin/rserver
+Restart=on-failure
+
+[Install]
+WantedBy=multi-user.target
diff --git a/sci-mathematics/rstudio/rstudio-0.99.486.ebuild b/sci-mathematics/rstudio/rstudio-0.99.486-r1.ebuild
similarity index 96%
rename from sci-mathematics/rstudio/rstudio-0.99.486.ebuild
rename to sci-mathematics/rstudio/rstudio-0.99.486-r1.ebuild
index 3682c5c..c5b11ff 100644
--- a/sci-mathematics/rstudio/rstudio-0.99.486.ebuild
+++ b/sci-mathematics/rstudio/rstudio-0.99.486-r1.ebuild
@@ -130,7 +130,12 @@ src_prepare() {
"${FILESDIR}"/${PN}-0.99.473-clang-pandoc.patch \
"${FILESDIR}"/${PN}-0.98.490-linker_flags.patch \
"${FILESDIR}"/${PN}-0.98.1091-boost-1.57.patch \
- "${FILESDIR}"/${PN}-0.99.473-qtsingleapplication.patch
+ "${FILESDIR}"/${PN}-0.99.473-qtsingleapplication.patch \
+ "${FILESDIR}"/${PN}-0.99.486-systemd.patch
+
+ # Enable CMake to install our .service file for systemd usage
+ mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die
+ cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die
# Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
# this sed hack for now. ~RMH
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/rstudio/files/, sci-mathematics/rstudio/
@ 2015-08-30 14:30 Mark Wright
0 siblings, 0 replies; 9+ messages in thread
From: Mark Wright @ 2015-08-30 14:30 UTC (permalink / raw
To: gentoo-commits
commit: 7a45c4dcb255f80d2bc7c891f532bc81a95ecaa8
Author: Mark Wright <gienah <AT> gentoo <DOT> org>
AuthorDate: Sun Aug 30 14:28:31 2015 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Sun Aug 30 14:29:41 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7a45c4dc
sci-mathematics/rstudio: Fix bug 558900, unbundle qtsingleapplication
Thanks to Helmut Jarausch for reporting, Franz Fellner for suggesting patching
rstudio to use dev-qt/qtsingleapplication[qt5] rather than the bundled version.
Remove sys-devel/clang upper bound, thanks to Helmut Jarausch for reporting and
testing with clang-3.6.2-r100. I tested it builds with clang-3.7.0_rc3.
Fix bug 558988 sci-mathematics/rstudio-0.99.473 missing qt dependencies,
thanks to Oleg and Anthony Staines for reporting and testing.
Package-Manager: portage-2.2.20.1
.../rstudio-0.99.473-qtsingleapplication.patch | 60 ++++++
sci-mathematics/rstudio/rstudio-0.99.473-r1.ebuild | 225 +++++++++++++++++++++
2 files changed, 285 insertions(+)
diff --git a/sci-mathematics/rstudio/files/rstudio-0.99.473-qtsingleapplication.patch b/sci-mathematics/rstudio/files/rstudio-0.99.473-qtsingleapplication.patch
new file mode 100644
index 0000000..bf66bd2
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-0.99.473-qtsingleapplication.patch
@@ -0,0 +1,60 @@
+--- rstudio-0.99.473-orig/src/cpp/desktop/CMakeLists.txt 2015-08-12 09:58:43.000000000 +1000
++++ rstudio-0.99.473/src/cpp/desktop/CMakeLists.txt 2015-08-30 23:16:11.396175587 +1000
+@@ -93,7 +93,12 @@
+ find_package(Qt5DBus REQUIRED)
+ endif()
+
+-
++find_path(QTSINGLEAPPLIB_INCLUDE_DIR NAMES QtSingleApplication
++ PATH_SUFFIXES QtSolutions
++ PATHS
++ /usr/include/qt5)
++find_library(QTSINGLEAPPLIB Qt5Solutions_SingleApplication-2.6
++ libQt5Solutions_SingleApplication-2.6)
+
+ # disable clang warnings for qt sources
+ if(APPLE)
+@@ -113,7 +118,6 @@
+
+ set(MOC_DESKTOP_HEADER_FILES ${DESKTOP_HEADER_FILES})
+ list(REMOVE_ITEM MOC_DESKTOP_HEADER_FILES
+- ${CMAKE_CURRENT_SOURCE_DIR}/3rdparty/qtsingleapplication/qtlockedfile.h
+ ${CMAKE_CURRENT_SOURCE_DIR}/DesktopDetectRHome.hpp
+ ${CMAKE_CURRENT_SOURCE_DIR}/DesktopOptions.hpp
+ ${CMAKE_CURRENT_SOURCE_DIR}/DesktopRVersion.hpp
+@@ -175,8 +179,6 @@
+ DesktopSubMenu.cpp
+ DesktopSynctex.cpp
+ DesktopNetworkAccessManager.cpp
+- 3rdparty/qtsingleapplication/qtsingleapplication.cpp
+- 3rdparty/qtsingleapplication/qtlocalpeer.cpp
+ )
+
+ if(WIN32)
+@@ -219,6 +221,7 @@
+ ${CORE_SOURCE_DIR}/include
+ ${CMAKE_CURRENT_SOURCE_DIR}
+ ${CMAKE_CURRENT_BINARY_DIR}
++ ${QTSINGLEAPPLIB_INCLUDE_DIR}
+ ${TESTS_INCLUDE_DIR}
+ )
+
+@@ -332,6 +335,7 @@
+
+ # set link dependencies
+ target_link_libraries(rstudio
++ ${QTSINGLEAPPLIB}
+ ${QT_LIBRARIES}
+ rstudio-core
+ ${LINK_FLAGS}
+--- rstudio-0.99.473-orig/src/cpp/desktop/DesktopPosixApplication.hpp 2015-08-12 09:58:43.000000000 +1000
++++ rstudio-0.99.473/src/cpp/desktop/DesktopPosixApplication.hpp 2015-08-30 21:41:21.616934106 +1000
+@@ -16,7 +16,7 @@
+ #ifndef DESKTOP_POSIX_APPLICATION_HPP
+ #define DESKTOP_POSIX_APPLICATION_HPP
+
+-#include "3rdparty/qtsingleapplication/QtSingleApplication"
++#include <QtSingleApplication>
+
+ namespace rstudio {
+ namespace desktop {
diff --git a/sci-mathematics/rstudio/rstudio-0.99.473-r1.ebuild b/sci-mathematics/rstudio/rstudio-0.99.473-r1.ebuild
new file mode 100644
index 0000000..b247a88
--- /dev/null
+++ b/sci-mathematics/rstudio/rstudio-0.99.473-r1.ebuild
@@ -0,0 +1,225 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 pax-utils
+
+# TODO
+# * package gin and gwt
+# * use dict from tree, linguas
+# * do src_test (use junit from tree?)
+
+# update from scripts in dependencies/common
+GWT_VER=2.7.0
+GIN_VER=1.5
+SELENIUM_VER=2.37.0
+CHROMEDRIVER_VER=2.7
+PANDOC_VER=1.13.1
+PACKRAT_VER=0.98.1000
+RMARKDOWN_VER=0.98.1000
+SHINYAPPS_VER=0.98.1000
+RSCONNECT_VER=0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0
+
+DESCRIPTION="IDE for the R language"
+HOMEPAGE="http://www.rstudio.org
+ https://github.com/rstudio/rstudio/"
+SRC_URI="https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz
+ https://s3.amazonaws.com/rstudio-buildtools/gin-${GIN_VER}.zip
+ https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWT_VER}.zip
+ https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUM_VER}.zip
+ https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUM_VER}.jar
+ https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux
+ https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip
+ https://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz
+ https://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz
+ https://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz
+ https://dev.gentoo.org/~gienah/distfiles/rsconnect_${RSCONNECT_VER}.tar.gz
+"
+
+LICENSE="AGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="dedicated server"
+
+QT_VER=5.4
+QT_SLOT=5
+RDEPEND="
+ app-text/pandoc
+ dev-haskell/pandoc-citeproc
+ >=dev-lang/R-2.11.1
+ >=dev-libs/boost-1.50:=
+ >=dev-libs/mathjax-2.3
+ dev-libs/openssl:0
+ sys-apps/util-linux
+ >=sys-devel/clang-3.5.0
+ sys-libs/zlib
+ || ( =virtual/jre-1.7*:= =virtual/jre-1.8*:= )
+ x11-libs/pango
+ !dedicated? (
+ >=dev-qt/qtcore-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtdbus-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtgui-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtopengl-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtsingleapplication-2.6.1_p20150629[qt5]
+ >=dev-qt/qtsensors-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtsql-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtsvg-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtwebkit-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtxml-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT}
+ server? ( virtual/pam )
+ )
+ dedicated? ( virtual/pam )"
+DEPEND="${RDEPEND}
+ app-arch/unzip
+ dev-java/ant-core
+ || ( =virtual/jdk-1.7*:= =virtual/jdk-1.8*:= )
+ virtual/pkgconfig"
+# test? ( dev-java/junit:4 )
+
+src_unpack() {
+ unpack ${P}.tar.gz gwt-${GWT_VER}.zip
+ cd "${S}" || die
+ mkdir -p src/gwt/lib/{gin,gwt} \
+ dependencies/common/dictionaries \
+ src/gwt/lib/selenium/${SELENIUM_VER} \
+ src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die
+ mv ../gwt-${GWT_VER} src/gwt/lib/gwt/${GWT_VER} || die
+ unzip -qd src/gwt/lib/gin/${GIN_VER} \
+ "${DISTDIR}"/gin-${GIN_VER}.zip || die
+ unzip -qd dependencies/common/dictionaries \
+ "${DISTDIR}"/core-dictionaries.zip || die
+ unzip -qd src/gwt/lib/selenium/${SELENIUM_VER} \
+ "${DISTDIR}"/selenium-java-${SELENIUM_VER}.zip || die
+ cp "${DISTDIR}"/selenium-server-standalone-${SELENIUM_VER}.jar \
+ src/gwt/lib/selenium/${SELENIUM_VER}/ || die
+ cp "${DISTDIR}"/chromedriver-linux \
+ src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die
+ cd dependencies/common || die
+ unpack packrat-${PACKRAT_VER}.tar.gz
+ unpack rmarkdown-${RMARKDOWN_VER}.tar.gz
+ unpack shinyapps-${SHINYAPPS_VER}.tar.gz
+ unpack rsconnect_${RSCONNECT_VER}.tar.gz
+ cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \
+ . || die
+ cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \
+ . || die
+ cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \
+ . || die
+ cp "${DISTDIR}"/rsconnect_${RSCONNECT_VER}.tar.gz \
+ . || die
+}
+
+src_prepare() {
+ java-pkg-2_src_prepare
+
+ find . -name .gitignore -delete || die
+
+ epatch "${FILESDIR}"/${PN}-0.98.490-prefs.patch \
+ "${FILESDIR}"/${PN}-0.99.473-paths.patch \
+ "${FILESDIR}"/${PN}-0.99.473-clang-pandoc.patch \
+ "${FILESDIR}"/${PN}-0.98.490-linker_flags.patch \
+ "${FILESDIR}"/${PN}-0.98.1091-boost-1.57.patch \
+ "${FILESDIR}"/${PN}-0.99.473-qtsingleapplication.patch
+
+ # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
+ # this sed hack for now. ~RMH
+ sed -i \
+ -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \
+ src/cpp/server/ServerOptions.cpp \
+ src/cpp/session/SessionOptions.cpp || die
+
+ # use mathjax from system
+ ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-23 || die
+
+ # make sure icons and mime stuff are with prefix
+ sed -i \
+ -e "s:/usr:${EPREFIX}/usr:g" \
+ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die
+
+ # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf
+ sed -e "s@/etc/rstudio/rserver.conf@${EROOT}etc/conf.d/rstudio-server.conf@" \
+ -i src/cpp/server/ServerOptions.cpp \
+ || die
+
+ # Set the rsession.conf file location for Gentoo prefix
+ sed -e "s@/etc/rstudio/rsession.conf@${EROOT}etc/rstudio/rsession.conf@" \
+ -i src/cpp/session/SessionOptions.cpp \
+ || die
+
+ # dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module.
+ # It provides a library that has its version number appended to the end,
+ # which is difficult to handle in cmake, as find_library does not support
+ # searching for wildcard library names. So I find the library name from the
+ # qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt.
+ rm -rf "${S}"/src/cpp/desktop/3rdparty || die
+ local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \
+ "${EROOT}"/usr/lib64/qt5/mkspecs/features/qtsingleapplication.prf \
+ | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \
+ -e 's@LIBS \*= -l@@')
+ sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \
+ -i "${S}"/src/cpp/desktop/CMakeLists.txt \
+ || die
+}
+
+src_configure() {
+ export RSTUDIO_VERSION_MAJOR=$(get_version_component_range 1)
+ export RSTUDIO_VERSION_MINOR=$(get_version_component_range 2)
+ export RSTUDIO_VERSION_PATCH=$(get_version_component_range 3)
+
+ local mycmakeargs=(
+ -DDISTRO_SHARE=share/${PN}
+ $(cmake-utils_use !dedicated RSTUDIO_INSTALL_FREEDESKTOP)
+ -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")")
+ -DQT_QMAKE_EXECUTABLE="${EROOT}"usr/lib64/qt5/bin/qmake
+ )
+
+ cmake-utils_src_configure
+}
+
+src_compile() {
+ cmake-utils_src_compile
+}
+
+src_install() {
+ cmake-utils_src_install
+ pax-mark m "${ED}usr/bin/rstudio"
+ doconfd "${FILESDIR}"/rstudio-server.conf
+ dodir /etc/rstudio
+ insinto /etc/rstudio
+ doins "${FILESDIR}"/rsession.conf
+ dosym /etc/conf.d/rstudio-server.conf /etc/rstudio/rserver.conf
+ if use dedicated || use server; then
+ dopamd src/cpp/server/extras/pam/rstudio
+ newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server
+ fi
+}
+
+pkg_preinst() {
+ use dedicated || gnome2_icon_savelist
+ java-pkg-2_pkg_preinst
+}
+
+pkg_postinst() {
+ use dedicated || { fdo-mime_desktop_database_update
+ fdo-mime_mime_database_update
+ gnome2_icon_cache_update ;}
+
+ if use dedicated || use server; then
+ enewgroup rstudio-server
+ enewuser rstudio-server -1 -1 -1 rstudio-server
+ fi
+}
+
+pkg_postrm() {
+ use dedicated || { fdo-mime_desktop_database_update
+ fdo-mime_mime_database_update
+ gnome2_icon_cache_update ;}
+}
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/rstudio/files/, sci-mathematics/rstudio/
@ 2015-08-27 0:13 Mark Wright
0 siblings, 0 replies; 9+ messages in thread
From: Mark Wright @ 2015-08-27 0:13 UTC (permalink / raw
To: gentoo-commits
commit: 694491a5c2e7cc112802816cc46edfba31815e4b
Author: Mark Wright <gienah <AT> gentoo <DOT> org>
AuthorDate: Thu Aug 27 00:12:22 2015 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Thu Aug 27 00:12:58 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=694491a5
sci-mathematics/rstudio: Bump to rstudio-0.99.473
Fixes Bug 550724 - sci-mathematics/rstudio: version bump to 0.99.473, thanks to
Anthony Staines and Pavel Kozlov for reporting.
Package-Manager: portage-2.2.20.1
sci-mathematics/rstudio/Manifest | 3 +
.../files/rstudio-0.99.473-clang-pandoc.patch | 77 ++++++++
.../rstudio/files/rstudio-0.99.473-paths.patch | 130 +++++++++++++
sci-mathematics/rstudio/rstudio-0.99.473.ebuild | 201 +++++++++++++++++++++
4 files changed, 411 insertions(+)
diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest
index 69be18a..8010bbd 100644
--- a/sci-mathematics/rstudio/Manifest
+++ b/sci-mathematics/rstudio/Manifest
@@ -4,10 +4,12 @@ DIST gin-1.5.zip 1055663 SHA256 f561f4eb5d5fe1cff95c881e6aed53a86e9f0de8a5286329
DIST gwt-2.5.0.rc1.zip 104156555 SHA256 83a6dec583d1b7f3bf3fd2e321d89c1d95881eed1f81c7ea4056201fc105258b SHA512 c0c4f502b4ca191537eada53eb0458c0d33282661423f6d2648e6107ed8e38465b189377fcd0d9babcbf2c688e16080d33cbd7165ed20dafda7fedc39a74e163 WHIRLPOOL b37f12d1937b6479b97e274a59a1856dcf0c5cc3b767b6a19f65d7807e1f32cc2483358f1414c4c9e427d890eb1e0617fe8af84c6f0dca4a9ded64ae5ffde129
DIST gwt-2.5.1.zip 111070580 SHA256 c457df45a3eed582452c5784ed11746685df494c0ffe4a8ae4de52945916593a SHA512 845c6bc6ce5ade57eeddd8b40cc3458f5e7d40d881cb4017615897eebd5349bfecfef8cd3e3b05a09b33ecf9ee0262d4a84700b0965a27b40cb60d701457a7ea WHIRLPOOL 9d820026e97f96402fc6b69a06f24d2f79df830a0afdba808ab98f14a32312bc999692ad5822005acf6fdcd1b4261918a318f9f20980c640cf32292d5df83a05
DIST gwt-2.6.0.zip 108819959 SHA256 bd4c13a5d1078446d519a742ee233971e55c447d1b87ffd5b1f90e54dd876b9a SHA512 40690f83f6271ab58abf0ccbf2da1045ea142867ed88accdce91f65a70e39ecf48070696caffcab3f797523ee69b0431b67155b7f04c2856cd95856a7e20d2fb WHIRLPOOL d59ce0f9b13a9956b07905479b394397020fcbc85ac3aabff9ebd74d39b7e660c862e7fe1adb32160e82186d83db10d1254121846e1a9bdafacc38efc55a38fd
+DIST gwt-2.7.0.zip 108818328 SHA256 aa65061b73836190410720bea422eb8e787680d7bc0c2b244ae6c9a0d24747b3 SHA512 a1eed5cc25c888cf81d4f22b1f9494d5d8567b911f7aeb1d164a6359120543668280afe1a3ffc9ed87b139c7db67fbcaaabde2066e3279909d7cd6fc22eaf499 WHIRLPOOL 96ca3c3bd39116fd6109a3e436f41875b6e3343596165d2a7941a961562f5ebd412f0a455d57fc47a9551d0ba76df172a4ad2622500715625faa325d94f3d961
DIST packrat-0.98.1000.tar.gz 97677 SHA256 c2da99ea6b62fd460f36b76f6c9b91865c42851545d61817c181bf6109e2df6b SHA512 2290c768ecf27a037e73c3f8336b9fd71c68ff19d071b4a8fbc469550d29007cacacdb75f854f73b5db2139a5104f129b85a3612e2ee47bd6118ee13f7d103a6 WHIRLPOOL a2d0c3c3e04cbc496f59abbf1065fcd0b7ae25433ce0b7ca8e75ab59362f320508537b2a62ed1028dd5baad6cbab5ef2e91dd9d3af327bbd04c08a96c57d80f4
DIST packrat_0.3.0.tar.gz 79974 SHA256 5ea35b6cb964188f4ffe58a3c9cf2c1f5a436569117c218d097e0fa66d032ebb SHA512 7f964e94e62193466e9bc880fea2c2fef8a0996061d9b971789e4e33a2d1e6327033f03236327545aa73e1112e2bea730c3fc0984729ecdec6f1582855c1b249 WHIRLPOOL 7ff4c3f3681300d402e8738b1aceac7ee2dbd55edb36966e3b7453b1b90182093979436d2c1193d460418251bc370ab222f61142311d8fe1a5a42527c5869aa3
DIST rmarkdown-0.98.1000.tar.gz 1423820 SHA256 56e9f964f805627f6d6face9bf09e6435be4cc48321447ad4041fee86d6f88b4 SHA512 df3540c24c87930fe55bff2ffe67c86c219800cb00ed72ba9451ecd0d0cad411548a78c1a04b9a2e301e853616dcb77e09129c4e48ade6f16d3f14b7ea7e4852 WHIRLPOOL 51098cd48a12a61da312fc1cc96927626db4a19cc069c88f615dd20abe40f52a7b1ac1325b52b1922110ffa76a7f255d9ff2a75cd05d3de01d1b96f0c8286790
DIST rmarkdown_0.2.49.tar.gz 3846795 SHA256 56b9a032b07d62c6af2a4a2d04007cccf379a9c8e91426c59f265c8b7fd992ee SHA512 46d15c354c9a90ae75a7dc3660b1ea82d097aaceb3dd220a4a8c6f4b22751ad2d63fd5ef3d56821160716ab6552529cef6513b5cd7043368d13513f537511fef WHIRLPOOL d658a091d1b4508ea38fbf2f3691517dc2b814aa3ffaec25483263266106756a89712d7c8a2ec3de8d6d45234d5f8b11340c287509bd836be5875527077f7fcd
+DIST rsconnect_0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0.tar.gz 197051 SHA256 e1e3e1f799eb8be679be9a2ed5aad7e9ce6cd603e3cb43fdc242490f0c311113 SHA512 208dc349f4aa7613ecf94939aba60d22d3a06972344b526c9b6c951015571f5922927bca08db571a7b8a268e42609a4f558f01278c9685f6da2ffc66a1f95ade WHIRLPOOL 4e3d64de00a98190c435d76f12a401d30950fdc7590b6bcc886ae50d4771825d39f93ea2bdcb4a9db026361c522f16f11297ff89dcb15c35f9471c1abf4f4e2c
DIST rstudio-0.97.336.tar.gz 12598580 SHA256 e6c24d6a865827d3a39e64508976a825bba705efe0921eb06f9a95ba58aefcd1 SHA512 bfaf6218cb400e83a97a320cf633e4656f1552e27bb9843fda1837945a3823fb0df20a2c86e0b6d76608d98806b0acf163aaba10783c923ef900b3eaf03b7569 WHIRLPOOL eca7b837ccff6cc6595298c3137f8663c0754256763a1d049e44a11e10daf53914234c426e004cc1f0158d7b4a38319f61653f78785c7189a64413fc196848c2
DIST rstudio-0.97.551.tar.gz 12602738 SHA256 caed5f6b6ec57139ddf550dc2f51c1f9a74b39b81b878863b97e1a12edecf498 SHA512 f855a5ba3a86e44c870a4843e94678a1f6eeedc49934d8ad42f202815f93d282913a0be739435be63e510a6ec81b7a1436e4c911acbff955f5fb28b78b00fd10 WHIRLPOOL d8cd3d2978b690fc8c83696cb2017748e74b38309174ac85d6d35d5a1dd91d8e0d8ea06177b349754b3be9eb5e78e04b1d23b82f9e7940d062b262c1eb7eb58e
DIST rstudio-0.98.1028.tar.gz 15555649 SHA256 19827c3d05b4817530fb07f235fe38ec5e391324acd1d5d8ab6711d0db4757ef SHA512 db1be9f91263386ad0fb8addc80421434695d2c8dd53101af268e878fd59c59b9349cc9456d7096d2c660ee2681cd0172d8f4d8432ccf7322a1a2b473ce291fd WHIRLPOOL ab2974d2e529fea03fe641569d4b74a6eb1d86179be47de46531a970d5f70624824e08573835d531a5033d20f800117174926b83aee290f784ac31f7a9627d7d
@@ -15,6 +17,7 @@ DIST rstudio-0.98.1091.tar.gz 15551758 SHA256 61745708096b5feb3d88befab65adf67dd
DIST rstudio-0.98.490.tar.gz 14989329 SHA256 e38296a10b12c9e769a8be0545c36745999b9ba90942f7ffb6d27f05192a7f93 SHA512 b167083eb4adf1203da63299e61c9e3f40b8aeb4728d25c9d840f8a22659aad8de442dbba3a68e7d11f6157680d3a3636f6d5fecbabab82fd8d1a8278e3f1cb1 WHIRLPOOL d7c07aea3aef424aa9fa05f74b8222cae69b9ce287ba67d80591dc2a433471e7127d975119667560bf6667190d128b0ffcf82f641792075dacf826f4d76df568
DIST rstudio-0.98.932.tar.gz 15515025 SHA256 e4a69a2f746cb7cfcacd3811f15e41a9d156175607da334f412614cc4cb70728 SHA512 beeb8c035d4f8524bd3e497162e3a218e92fbd1c1704ff3bc99a70a1248244155e3998272a6aa985b59cfa67c640adec877465f5d50acb9e47abca2657f2a06f WHIRLPOOL e422a2cef857aa9d094dd11e62b6c762a2a7477e7d84fd66456152c6521aebd94d4c365980ed6c06fc1c90d5a62426376d978de0ed23186d4732c0b148cc62bc
DIST rstudio-0.98.953.tar.gz 15518231 SHA256 944f5882a0d61f551cd6f6cbe7882b5a5ea5be12d2c6d5ec9e79cee65869dbb7 SHA512 38a17d1abf91f4e775c4d735152fe6c8030b2df771bd7333fb3c9408fe14ac0b6180d7eaad7ac09ce2d50e5dcaa5a3b828909b30f507fd7c35fe27f7bd96866c WHIRLPOOL e2135f425b48b952282d8c44bd121517098521715c70537a6ac1a3be1732928666c5cb40fbc20b9f394a606e0e116723190790a202cbf62986ffbca528646058
+DIST rstudio-0.99.473.tar.gz 16993092 SHA256 a402995251393d50fa70e2e02188a8b32dc34e067f2f8461f087bf71f643585c SHA512 5615840501f7629e82100fee78c35b8d4dc78d78932d65c2e91a6472bc94726389566f5853a99e3d0631fd260e59acea5a40acf82f72709741b89a1ed3c901af WHIRLPOOL 809549c76efee8b29452584ab4295bcbbf533f8100c8caf4dd3b4a3c8843dc54a0d8f3178a6aecab5c188f2498a74daa6c6677fc6d43bd7dd861487c557e48df
DIST selenium-java-2.37.0.zip 24625928 SHA256 0eebba65d8edb01c1f46e462907c58f5d6e1cb0ddf63660a9985c8432bdffbb7 SHA512 68624e82dbc751a25c50fad72702a98eb30d77fd4337d2a969f8e06bcc49e5f8c835cd27ec53772f3375014ddde1d5636936e966b75f3594a9f86aa18ba4e779 WHIRLPOOL eb6659aae26f3c78b6f998546b23d0636c9d00ed8a7f985db1463ac4bd483ccb3e643d84e2ca0f59e0636a8de79eb552ff1d68eb6f9c06907029f7552d8f7777
DIST selenium-server-standalone-2.37.0.jar 34730734 SHA256 97bc8c699037fb6e99ba7af570fb60dbb1b7ce30cde2448287a44ef65b13023e SHA512 b215446d42d2d1f69664349b6ae6dc53a532d3624c91254f0f4183d0ad764648792e5cc1126a55a1e60d9687d55200fed01d6d2f46cc3d853b1fa6ee38111018 WHIRLPOOL 20640591534f31f24825a9ed139589b182e8b60d86541bf0be104d3cc0280983f6566bd0459f2253ac3875b48a2798b205bac8f815a119fff6db625ce9bbc29e
DIST shinyapps-0.98.1000.tar.gz 910095 SHA256 b95c512ae0a0fb4335878d9cfcf9073e2cb3ccfed73543abe27ea8878ed36d57 SHA512 3162317c4c20cfc1497e952a8235867084d629ae88407e6c465b3e208adb1dc97abfe6b9922e0374ddf4c8e38a76e112942bd312c54a66f74e6f2a3fe4c0a07c WHIRLPOOL ecc2bce78387cb42e9989163d8fca29220e66f085acde3323417058aebb624dafa8c0e1873c7d79e67324cbd5aad250ef9fcdbbc8f659d64482233b95d898a15
diff --git a/sci-mathematics/rstudio/files/rstudio-0.99.473-clang-pandoc.patch b/sci-mathematics/rstudio/files/rstudio-0.99.473-clang-pandoc.patch
new file mode 100644
index 0000000..b37a919
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-0.99.473-clang-pandoc.patch
@@ -0,0 +1,77 @@
+--- rstudio-0.99.473-orig/src/cpp/session/CMakeLists.txt 2015-08-12 09:58:43.000000000 +1000
++++ rstudio-0.99.473/src/cpp/session/CMakeLists.txt 2015-08-27 00:51:48.395751378 +1000
+@@ -25,30 +25,11 @@
+ if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-23")
+ message(FATAL_ERROR "Mathjax 2.3 not found (re-run install-dependencies script to install)")
+ endif()
+-if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc")
+- message(FATAL_ERROR "pandoc not found (re-run install-dependencies script to install)")
+-endif()
+ if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/rsconnect")
+ message(FATAL_ERROR "rsconnect package not found (re-run install-dependencies script to install)")
+ endif()
+
+
+-# verify libclang is installed
+-if(WIN32)
+- set(LIBCLANG_VERSION "3.4")
+-else()
+- set(LIBCLANG_VERSION "3.5")
+-endif()
+-set(LIBCLANG_DIR "${RSTUDIO_DEPENDENCIES_DIR}/common/libclang/${LIBCLANG_VERSION}")
+-if(NOT EXISTS "${LIBCLANG_DIR}")
+- message(FATAL_ERROR "libclang ${LIBCLANG_VERSION} not found (re-run install-dependencies script to install)")
+-endif()
+-set(LIBCLANG_HEADERS_DIR "${RSTUDIO_DEPENDENCIES_DIR}/common/libclang/builtin-headers")
+-if(NOT EXISTS "${LIBCLANG_HEADERS_DIR}")
+- message(FATAL_ERROR "libclang builtin-headers not found (re-run install-dependencies script to install)")
+-endif()
+-
+-
+ # include files
+ file(GLOB_RECURSE SESSION_HEADER_FILES "*.h*")
+
+@@ -391,18 +372,6 @@
+ install(DIRECTORY "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-23"
+ DESTINATION "${RSTUDIO_INSTALL_SUPPORTING}/resources")
+
+- # install pandoc
+- if(RSTUDIO_PACKAGE_BUILD_SLES)
+- # when producing a SUSE Linux Enterpise build, we want to install the
+- # static Pandoc binaries (see dependencies/common/install-pandoc)
+- set(PANDOC_EXTENSION_DIR "/static")
+- endif()
+- set(PANDOC_BIN "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc/1.13.1${PANDOC_EXTENSION_DIR}")
+- file(GLOB PANDOC_FILES "${PANDOC_BIN}/pandoc*")
+- install(FILES ${PANDOC_FILES}
+- PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+- DESTINATION ${RSTUDIO_INSTALL_BIN}/pandoc)
+-
+ # install rsconnect package
+ file(GLOB RSCONNECT_PACKAGE "${RSTUDIO_DEPENDENCIES_DIR}/common/rsconnect*.tar.gz")
+ install(FILES ${RSCONNECT_PACKAGE}
+@@ -420,24 +389,6 @@
+ install(DIRECTORY "resources/help_resources"
+ DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources)
+
+- # install libclang
+- if(WIN32)
+- file(GLOB LIBCLANG_32_FILES "${LIBCLANG_DIR}/x86/libclang.*")
+- install(PROGRAMS ${LIBCLANG_32_FILES}
+- DESTINATION ${RSTUDIO_INSTALL_BIN}/rsclang/x86)
+- file(GLOB LIBCLANG_64_FILES "${LIBCLANG_DIR}/x86_64/libclang.*")
+- install(PROGRAMS ${LIBCLANG_64_FILES}
+- DESTINATION ${RSTUDIO_INSTALL_BIN}/rsclang/x86_64)
+- else()
+- file(GLOB_RECURSE LIBCLANG_FILES "${LIBCLANG_DIR}/libclang.*")
+- install(PROGRAMS ${LIBCLANG_FILES}
+- DESTINATION ${RSTUDIO_INSTALL_BIN}/rsclang)
+- endif()
+-
+- # install libclang builtin-headers
+- install(DIRECTORY "${RSTUDIO_DEPENDENCIES_DIR}/common/libclang/builtin-headers"
+- DESTINATION "${RSTUDIO_INSTALL_SUPPORTING}/resources/libclang")
+-
+ # install 64 bit binaries if we are on win64
+ if(WIN32)
+ if(NOT ("$ENV{PROGRAMW6432}" STREQUAL ""))
diff --git a/sci-mathematics/rstudio/files/rstudio-0.99.473-paths.patch b/sci-mathematics/rstudio/files/rstudio-0.99.473-paths.patch
new file mode 100644
index 0000000..6b8d888
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-0.99.473-paths.patch
@@ -0,0 +1,130 @@
+--- rstudio-0.99.473-orig/CMakeGlobals.txt 2015-08-12 09:58:43.000000000 +1000
++++ rstudio-0.99.473/CMakeGlobals.txt 2015-08-26 22:12:43.614346285 +1000
+@@ -111,7 +111,7 @@
+ else()
+ set(RSTUDIO_INSTALL_BIN bin)
+ endif()
+- set(RSTUDIO_INSTALL_SUPPORTING .)
++ set(RSTUDIO_INSTALL_SUPPORTING ${DISTRO_SHARE})
+ endif()
+
+ # if the install prefix is /usr/local then tweak as appropriate
+--- rstudio-0.99.473-orig/src/cpp/server/CMakeLists.txt 2015-08-12 09:58:43.000000000 +1000
++++ rstudio-0.99.473/src/cpp/server/CMakeLists.txt 2015-08-26 22:15:30.988353389 +1000
+@@ -160,7 +160,7 @@
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT})
+ install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}
+- DESTINATION ${RSERVER_INITD_DEBIAN_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_DEBIAN_DIR})
+
+ # install configured redhat init.d script
+ set(RSERVER_INITD_REDHAT_DIR "extras/init.d/redhat")
+@@ -168,7 +168,7 @@
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT})
+ install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}
+- DESTINATION ${RSERVER_INITD_REDHAT_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_REDHAT_DIR})
+
+ # install configured suse init.d script
+ set(RSERVER_INITD_SUSE_DIR "extras/init.d/suse")
+@@ -176,13 +176,13 @@
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_SUSE_SCRIPT}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT})
+ install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT}
+- DESTINATION ${RSERVER_INITD_SUSE_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_SUSE_DIR})
+
+ # install pam profile
+ set(RSERVER_PAM_DIR "extras/pam")
+ set(RSERVER_PAM_PROFILE "${RSERVER_PAM_DIR}/rstudio")
+ install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_PAM_PROFILE}
+- DESTINATION ${RSERVER_PAM_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_PAM_DIR})
+
+ # install configured apparmor profile
+ set(RSERVER_APPARMOR_DIR "extras/apparmor")
+@@ -190,9 +190,9 @@
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_APPARMOR_PROFILE}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_APPARMOR_PROFILE})
+ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_APPARMOR_PROFILE}
+- DESTINATION ${RSERVER_APPARMOR_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_APPARMOR_DIR})
+ install(PROGRAMS ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_APPARMOR_DIR}/apparmor-profile-load
+- DESTINATION ${RSERVER_APPARMOR_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_APPARMOR_DIR})
+
+ # install configured upstart profile
+ set(RSERVER_UPSTART_DIR "extras/upstart")
+@@ -200,12 +200,12 @@
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE})
+ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE}
+- DESTINATION ${RSERVER_UPSTART_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
+ set(RSERVER_UPSTART_PROFILE_REDHAT "${RSERVER_UPSTART_DIR}/rstudio-server.redhat.conf")
+ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}.in
+ ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT})
+ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}
+- DESTINATION ${RSERVER_UPSTART_DIR})
++ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
+
+ # install configured systemd profile
+ set(RSERVER_SYSTEMD_DIR "extras/systemd")
+--- rstudio-0.99.473-orig/src/cpp/server/ServerOptions.cpp 2015-08-12 09:58:43.000000000 +1000
++++ rstudio-0.99.473/src/cpp/server/ServerOptions.cpp 2015-08-26 22:12:43.615346286 +1000
+@@ -314,8 +314,8 @@
+
+ // convert relative paths by completing from the system installation
+ // path (this allows us to be relocatable)
+- resolvePath(resourcePath, &wwwLocalPath_);
+- resolvePath(resourcePath, &wwwSymbolMapsPath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwLocalPath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
+ resolvePath(binaryPath, &authPamHelperPath_);
+ resolvePath(binaryPath, &rsessionPath_);
+ resolvePath(binaryPath, &rldpathPath_);
+--- rstudio-0.99.473-orig/src/cpp/session/SessionOptions.cpp 2015-08-12 09:58:43.000000000 +1000
++++ rstudio-0.99.473/src/cpp/session/SessionOptions.cpp 2015-08-26 22:17:40.594358890 +1000
+@@ -43,7 +43,7 @@
+ namespace session {
+
+ namespace {
+-const char* const kDefaultPandocPath = "bin/pandoc";
++const char* const kDefaultPandocPath = "bin";
+ const char* const kDefaultPostbackPath = "bin/postback/rpostback";
+ const char* const kDefaultRsclangPath = "bin/rsclang";
+ } // anonymous namespace
+@@ -431,14 +431,14 @@
+ }
+
+ // convert relative paths by completing from the app resource path
+- resolvePath(resourcePath, &rResourcesPath_);
+- resolvePath(resourcePath, &agreementFilePath_);
+- resolvePath(resourcePath, &wwwLocalPath_);
+- resolvePath(resourcePath, &wwwSymbolMapsPath_);
+- resolvePath(resourcePath, &coreRSourcePath_);
+- resolvePath(resourcePath, &modulesRSourcePath_);
+- resolvePath(resourcePath, &sessionLibraryPath_);
+- resolvePath(resourcePath, &sessionPackageArchivesPath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &rResourcesPath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &agreementFilePath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwLocalPath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &coreRSourcePath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &modulesRSourcePath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &sessionLibraryPath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &sessionPackageArchivesPath_);
+ resolvePostbackPath(resourcePath, &rpostbackPath_);
+ #ifdef _WIN32
+ resolvePath(resourcePath, &consoleIoPath_);
+@@ -447,7 +447,7 @@
+ resolvePath(resourcePath, &msysSshPath_);
+ resolvePath(resourcePath, &sumatraPath_);
+ #endif
+- resolvePath(resourcePath, &hunspellDictionariesPath_);
++ resolvePath(resourcePath.childPath(DISTRO_SHARE), &hunspellDictionariesPath_);
+ resolvePath(resourcePath, &mathjaxPath_);
+ resolvePath(resourcePath, &libclangHeadersPath_);
+ resolvePandocPath(resourcePath, &pandocPath_);
diff --git a/sci-mathematics/rstudio/rstudio-0.99.473.ebuild b/sci-mathematics/rstudio/rstudio-0.99.473.ebuild
new file mode 100644
index 0000000..f98cffe
--- /dev/null
+++ b/sci-mathematics/rstudio/rstudio-0.99.473.ebuild
@@ -0,0 +1,201 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 pax-utils
+
+# TODO
+# * package gin and gwt
+# * use dict from tree, linguas
+# * do src_test (use junit from tree?)
+
+# update from scripts in dependencies/common
+GWT_VER=2.7.0
+GIN_VER=1.5
+SELENIUM_VER=2.37.0
+CHROMEDRIVER_VER=2.7
+PANDOC_VER=1.13.1
+PACKRAT_VER=0.98.1000
+RMARKDOWN_VER=0.98.1000
+SHINYAPPS_VER=0.98.1000
+RSCONNECT_VER=0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0
+
+DESCRIPTION="IDE for the R language"
+HOMEPAGE="http://www.rstudio.org
+ https://github.com/rstudio/rstudio/"
+SRC_URI="https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz
+ https://s3.amazonaws.com/rstudio-buildtools/gin-${GIN_VER}.zip
+ https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWT_VER}.zip
+ https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUM_VER}.zip
+ https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUM_VER}.jar
+ https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux
+ https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip
+ https://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz
+ https://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz
+ https://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz
+ https://dev.gentoo.org/~gienah/distfiles/rsconnect_${RSCONNECT_VER}.tar.gz
+"
+
+LICENSE="AGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="dedicated server"
+
+QT_VER=5.4
+QT_SLOT=5
+RDEPEND="
+ app-text/pandoc
+ dev-haskell/pandoc-citeproc
+ >=dev-lang/R-2.11.1
+ >=dev-libs/boost-1.50:=
+ >=dev-libs/mathjax-2.3
+ dev-libs/openssl:0
+ sys-apps/util-linux
+ >=sys-devel/clang-3.5.0 <sys-devel/clang-3.6.0
+ sys-libs/zlib
+ || ( =virtual/jre-1.7*:= =virtual/jre-1.8*:= )
+ x11-libs/pango
+ !dedicated? (
+ >=dev-qt/qtcore-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtdbus-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtgui-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtsensors-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtwebkit-${QT_VER}:${QT_SLOT}
+ >=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT}
+ server? ( virtual/pam )
+ )
+ dedicated? ( virtual/pam )"
+DEPEND="${RDEPEND}
+ app-arch/unzip
+ dev-java/ant-core
+ || ( =virtual/jdk-1.7*:= =virtual/jdk-1.8*:= )
+ virtual/pkgconfig"
+# test? ( dev-java/junit:4 )
+
+src_unpack() {
+ unpack ${P}.tar.gz gwt-${GWT_VER}.zip
+ cd "${S}" || die
+ mkdir -p src/gwt/lib/{gin,gwt} \
+ dependencies/common/dictionaries \
+ src/gwt/lib/selenium/${SELENIUM_VER} \
+ src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die
+ mv ../gwt-${GWT_VER} src/gwt/lib/gwt/${GWT_VER} || die
+ unzip -qd src/gwt/lib/gin/${GIN_VER} \
+ "${DISTDIR}"/gin-${GIN_VER}.zip || die
+ unzip -qd dependencies/common/dictionaries \
+ "${DISTDIR}"/core-dictionaries.zip || die
+ unzip -qd src/gwt/lib/selenium/${SELENIUM_VER} \
+ "${DISTDIR}"/selenium-java-${SELENIUM_VER}.zip || die
+ cp "${DISTDIR}"/selenium-server-standalone-${SELENIUM_VER}.jar \
+ src/gwt/lib/selenium/${SELENIUM_VER}/ || die
+ cp "${DISTDIR}"/chromedriver-linux \
+ src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die
+ cd dependencies/common || die
+ unpack packrat-${PACKRAT_VER}.tar.gz
+ unpack rmarkdown-${RMARKDOWN_VER}.tar.gz
+ unpack shinyapps-${SHINYAPPS_VER}.tar.gz
+ unpack rsconnect_${RSCONNECT_VER}.tar.gz
+ cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \
+ . || die
+ cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \
+ . || die
+ cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \
+ . || die
+ cp "${DISTDIR}"/rsconnect_${RSCONNECT_VER}.tar.gz \
+ . || die
+}
+
+src_prepare() {
+ java-pkg-2_src_prepare
+
+ find . -name .gitignore -delete || die
+
+ epatch "${FILESDIR}"/${PN}-0.98.490-prefs.patch \
+ "${FILESDIR}"/${PN}-0.99.473-paths.patch \
+ "${FILESDIR}"/${PN}-0.99.473-clang-pandoc.patch \
+ "${FILESDIR}"/${PN}-0.98.490-linker_flags.patch \
+ "${FILESDIR}"/${PN}-0.98.1091-boost-1.57.patch
+
+ # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
+ # this sed hack for now. ~RMH
+ sed -i \
+ -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \
+ src/cpp/server/ServerOptions.cpp \
+ src/cpp/session/SessionOptions.cpp || die
+
+ # use mathjax from system
+ ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-23 || die
+
+ # make sure icons and mime stuff are with prefix
+ sed -i \
+ -e "s:/usr:${EPREFIX}/usr:g" \
+ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die
+
+ # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf
+ sed -e "s@/etc/rstudio/rserver.conf@${EROOT}etc/conf.d/rstudio-server.conf@" \
+ -i src/cpp/server/ServerOptions.cpp \
+ || die
+
+ # Set the rsession.conf file location for Gentoo prefix
+ sed -e "s@/etc/rstudio/rsession.conf@${EROOT}etc/rstudio/rsession.conf@" \
+ -i src/cpp/session/SessionOptions.cpp \
+ || die
+}
+
+src_configure() {
+ export RSTUDIO_VERSION_MAJOR=$(get_version_component_range 1)
+ export RSTUDIO_VERSION_MINOR=$(get_version_component_range 2)
+ export RSTUDIO_VERSION_PATCH=$(get_version_component_range 3)
+
+ local mycmakeargs=(
+ -DDISTRO_SHARE=share/${PN}
+ $(cmake-utils_use !dedicated RSTUDIO_INSTALL_FREEDESKTOP)
+ -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")")
+ -DQT_QMAKE_EXECUTABLE="${EROOT}"usr/lib64/qt5/bin/cmake
+ )
+
+ cmake-utils_src_configure
+}
+
+src_compile() {
+ cmake-utils_src_compile
+}
+
+src_install() {
+ cmake-utils_src_install
+ pax-mark m "${ED}usr/bin/rstudio"
+ doconfd "${FILESDIR}"/rstudio-server.conf
+ dodir /etc/rstudio
+ insinto /etc/rstudio
+ doins "${FILESDIR}"/rsession.conf
+ dosym /etc/conf.d/rstudio-server.conf /etc/rstudio/rserver.conf
+ if use dedicated || use server; then
+ dopamd src/cpp/server/extras/pam/rstudio
+ newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server
+ fi
+}
+
+pkg_preinst() {
+ use dedicated || gnome2_icon_savelist
+ java-pkg-2_pkg_preinst
+}
+
+pkg_postinst() {
+ use dedicated || { fdo-mime_desktop_database_update
+ fdo-mime_mime_database_update
+ gnome2_icon_cache_update ;}
+
+ if use dedicated || use server; then
+ enewgroup rstudio-server
+ enewuser rstudio-server -1 -1 -1 rstudio-server
+ fi
+}
+
+pkg_postrm() {
+ use dedicated || { fdo-mime_desktop_database_update
+ fdo-mime_mime_database_update
+ gnome2_icon_cache_update ;}
+}
^ permalink raw reply related [flat|nested] 9+ messages in thread
end of thread, other threads:[~2021-06-11 18:34 UTC | newest]
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2019-12-20 17:53 [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/rstudio/files/, sci-mathematics/rstudio/ David Seifert
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