[gentoo-commits] repo/gentoo:master commit in: sci-biology/shrimp/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/shrimp/

[David Seifert]

commit:     97912518709b1fc7b9bcfca3921bbdaf1ba9cdbf
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Tue Dec 10 23:48:34 2019 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Tue Dec 10 23:48:34 2019 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=97912518

sci-biology/shrimp: Remove old

Package-Manager: Portage-2.3.81, Repoman-2.3.20
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/shrimp/Manifest            |  1 -
 sci-biology/shrimp/shrimp-2.0.1.ebuild | 54 ----------------------------------
 2 files changed, 55 deletions(-)

diff --git a/sci-biology/shrimp/Manifest b/sci-biology/shrimp/Manifest
index 775fee6a3bb..5be68cd79e2 100644
--- a/sci-biology/shrimp/Manifest
+++ b/sci-biology/shrimp/Manifest
@@ -1,2 +1 @@
-DIST SHRiMP_2_0_1.src.tar.gz 158535 BLAKE2B 85b5462e812bece6a9ad51044bfeb823082e41ee66f313e0f7f621a29bfe5384d640278fa90ac102f476bef1538b0c7e1965dae7c1b877426b0d16f147a1e6ac SHA512 1cb5d46d59102502acb26c33f1d5537644268704145f6e2ae7428aeaba6681cf1e63f7924d8ee696431675f2c4627da46fd0171f25bbb3296d247339c2d709eb
 DIST SHRiMP_2_2_3.src.tar.gz 4596867 BLAKE2B 64e485b8e2524062c11c581bbcac426800c9f42f61da467378dbfd3add63f721a9da9c04df61bde3704e654a20395e799e89fc5e47129b1d3f5bc93f960470fa SHA512 029179aeeb317194b998c29aa91d1d2ce5ccbc6f9ad4a1043d1e5fc75d3344c2f39500ab07e8389c09fa179f0c9b59afee22691bc4eb5d396777f4e0fe25f2d5

diff --git a/sci-biology/shrimp/shrimp-2.0.1.ebuild b/sci-biology/shrimp/shrimp-2.0.1.ebuild
deleted file mode 100644
index c71aa047c1a..00000000000
--- a/sci-biology/shrimp/shrimp-2.0.1.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit flag-o-matic toolchain-funcs
-
-MY_PV=${PV//./_}
-
-DESCRIPTION="SHort Read Mapping Package"
-HOMEPAGE="http://compbio.cs.toronto.edu/shrimp/"
-SRC_URI="http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${MY_PV}.src.tar.gz"
-
-LICENSE="shrimp"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="custom-cflags"
-
-# file collision on /usr/bin/utils #453044
-DEPEND="
-	!sci-biology/emboss
-	!sci-mathematics/cado-nfs"
-RDEPEND="${DEPEND}"
-
-S=${WORKDIR}/SHRiMP_${MY_PV}
-
-pkg_setup() {
-	if [[ ${CC} == *gcc* ]] &&	! tc-has-openmp; then
-		elog "Please set CC to an OPENMP capable compiler (e.g. gcc[openmp] or icc"
-		die "C compiler lacks OPENMP support"
-	fi
-}
-
-src_prepare() {
-	sed -e '1 a #include <stdint.h>' -i common/dag_glue.cpp || die
-	# respect LDFLAGS wrt 331823
-	sed -i -e "s/LDFLAGS/LIBS/" -e "s/\$(LD)/& \$(LDFLAGS)/" \
-		-e 's/-static//' Makefile || die
-}
-
-src_compile() {
-	append-flags -fopenmp
-	use custom-cflags || append-flags -O3 # per instructions in BUILDING
-	tc-export CXX
-	emake CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}"
-}
-
-src_install() {
-	rm bin/README
-	dobin bin/*
-	insinto /usr/share/${PN}
-	doins -r utils
-	dodoc HISTORY README TODO SPLITTING_AND_MERGING
-}