[gentoo-commits] repo/gentoo:master commit in: sci-biology/gibbs/files/, sci-biology/gibbs/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/gibbs/files/, sci-biology/gibbs/

[David Seifert]

commit:     f615ec696cbefd8587307021004b0d82419a8e4b
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Tue Dec 10 23:48:12 2019 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Tue Dec 10 23:48:12 2019 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f615ec69

sci-biology/gibbs: Port to EAPI 7

Package-Manager: Portage-2.3.81, Repoman-2.3.20
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch | 11 +++++++
 sci-biology/gibbs/gibbs-3.1.ebuild                 | 34 ++++++++++------------
 2 files changed, 27 insertions(+), 18 deletions(-)

diff --git a/sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch b/sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch
new file mode 100644
index 00000000000..6eaad637cfc
--- /dev/null
+++ b/sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch
@@ -0,0 +1,11 @@
+--- a/configure.in
++++ b/configure.in
+@@ -51,7 +51,7 @@
+ 	fi
+ 	])
+ 
+-CFLAGS="$OPTFLAGS $MPIFLAGS  -Wall -Werror $MACFLAG"
++CFLAGS="$CFLAGS $OPTFLAGS $MPIFLAGS -Wall $MACFLAG"
+ 
+ AC_PROG_CC([$COMP_LIST])
+ 

diff --git a/sci-biology/gibbs/gibbs-3.1.ebuild b/sci-biology/gibbs/gibbs-3.1.ebuild
index de8322a5068..a06d0880ee4 100644
--- a/sci-biology/gibbs/gibbs-3.1.ebuild
+++ b/sci-biology/gibbs/gibbs-3.1.ebuild
@@ -1,11 +1,9 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=4
+EAPI=7
 
-AUTOTOOLS_AUTORECONF=yes
-
-inherit autotools-utils multilib
+inherit autotools
 
 DESCRIPTION="Identify motifs, conserved regions, in DNA or protein sequences"
 HOMEPAGE="http://bayesweb.wadsworth.org/gibbs/gibbs.html"
@@ -13,37 +11,37 @@ SRC_URI="mirror://gentoo/gibbs-${PV}.tar.gz"
 
 LICENSE="GPL-2"
 SLOT="0"
-IUSE="mpi"
 KEYWORDS="amd64 x86"
+IUSE="mpi"
 
 DEPEND="
 	mpi? (
 		virtual/mpi
-		sys-cluster/mpe2 )"
+		sys-cluster/mpe2
+	)"
 RDEPEND="${DEPEND}"
 
+PATCHES=( "${FILESDIR}"/${PN}-3.1-fix-CFLAGS.patch )
+
 src_prepare() {
-	sed \
-		-e 's/CFLAGS="$OPTFLAGS/CFLAGS="$CFLAGS $OPTFLAGS/' \
-		-e 's/-Werror//' \
-		-i configure.in || die
-	autotools-utils_src_prepare
+	default
+	mv configure.{in,ac} || die
+	eautoreconf
 }
 
 src_configure() {
-	if use mpi; then export CC=mpicc; fi
-	local myeconfargs=( $(use_enable mpi) )
-	autotools-utils_src_configure
+	use mpi && export CC=mpicc
+	econf $(use_enable mpi)
 }
 
 src_install() {
-	autotools-utils_src_install
+	default
+
 	exeinto /usr/$(get_libdir)/${PN}
 	doexe *.pl
-	dodoc README ChangeLog
 }
 
 pkg_postinst() {
-	einfo "Supplementary Perl scripts for Gibbs have been installed into /usr/$(get_libdir)/${PN}."
+	einfo "Supplementary Perl scripts for Gibbs have been installed into ${EROOT}/usr/$(get_libdir)/${PN}."
 	einfo "These scripts require installation of sci-biology/bioperl."
 }