[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/apbs/

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/apbs/

[Andreas Sturmlechner]

commit:     b9a0956be6cfedb4fe5cb4d4f94b1675db4dff3e
Author:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Sun Oct 14 20:42:25 2018 +0000
Commit:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Sun Oct 14 20:45:44 2018 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b9a0956b

sci-chemistry/apbs: Several missing || die

Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sci-chemistry/apbs/apbs-1.4.1-r2.ebuild | 14 +++++++++-----
 1 file changed, 9 insertions(+), 5 deletions(-)

diff --git a/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild b/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
index aecbcd3ce74..2f20af9fb69 100644
--- a/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
+++ b/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -63,7 +63,8 @@ src_prepare() {
 	use doc && MAKEOPTS+=" -j1"
 	if use python; then
 		unset PATCHES || die
-		cd tools/python && distutils-r1_src_prepare
+		cd tools/python || die
+		distutils-r1_src_prepare
 	fi
 }
 
@@ -92,7 +93,8 @@ src_configure() {
 	)
 	cmake-utils_src_configure
 	if use python; then
-		cd tools/python && distutils-r1_src_configure
+		cd tools/python || die
+		distutils-r1_src_configure
 	fi
 }
 
@@ -100,7 +102,8 @@ src_compile(){
 	cmake-utils_src_compile
 	if use python; then
 		append-ldflags -L"${S}"/lib
-		cd tools/python && distutils-r1_src_compile
+		cd tools/python || die
+		distutils-r1_src_compile
 	fi
 }
 
@@ -121,7 +124,8 @@ src_install() {
 		fi
 	done
 	if use python; then
-		cd tools/python && distutils-r1_src_install
+		cd tools/python || die
+		distutils-r1_src_install
 		rm -rf "${ED}"/usr/share/apbs/tools/python || die
 	fi
 }

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/apbs/

[Andreas Sturmlechner]

commit:     7671a250e0f896df379eea4eb6d7fc1450484fe3
Author:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Sun Oct 14 20:45:25 2018 +0000
Commit:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Sun Oct 14 20:45:45 2018 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7671a250

sci-chemistry/apbs: https

Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sci-chemistry/apbs/apbs-1.4.1-r2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild b/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
index 5ab24e0c3cc..108e43bf904 100644
--- a/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
+++ b/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
@@ -11,7 +11,7 @@ inherit cmake-utils distutils-r1 flag-o-matic multilib toolchain-funcs
 GITHUB_REV="74fcb8676de69ed04ddab8976a8b05a6caaf4d65"
 
 DESCRIPTION="Evaluation of electrostatic properties of nanoscale biomolecular systems"
-HOMEPAGE="http://www.poissonboltzmann.org/apbs/"
+HOMEPAGE="https://www.poissonboltzmann.org/apbs/"
 #SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz"
 SRC_URI="https://github.com/Electrostatics/apbs-pdb2pqr/archive/${GITHUB_REV}.zip -> ${P}.zip"
 

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/apbs/

[Andreas Sturmlechner]

commit:     9d82ea2321e60382e0b2e94cc61daa005c694993
Author:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Sun Oct 14 20:44:26 2018 +0000
Commit:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Sun Oct 14 20:45:45 2018 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9d82ea23

sci-chemistry/apbs: Sort and fix DEPENDs

Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sci-chemistry/apbs/apbs-1.4.1-r2.ebuild | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild b/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
index 2f20af9fb69..5ab24e0c3cc 100644
--- a/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
+++ b/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
@@ -28,18 +28,18 @@ REQUIRED_USE="
 RDEPEND="
 	dev-cpp/eigen:3
 	dev-libs/maloc[mpi=]
-	virtual/blas
 	sys-libs/readline
+	virtual/blas
 	fetk? (
-		sci-libs/fetk
 		sci-libs/amd
-		sci-libs/umfpack
+		sci-libs/fetk
 		sci-libs/superlu
+		sci-libs/umfpack
 	)
 	mpi? ( virtual/mpi )
 	python? ( ${PYTHON_DEPS} )
 "
-DEPEND="${DEPEND}
+DEPEND="${RDEPEND}
 	virtual/pkgconfig
 	doc? ( app-doc/doxygen )
 "

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/apbs/

[Michał Górny]

commit:     bd5c48004f27c0eb2ae1fa2c977bb8da0fd73deb
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 28 17:30:03 2019 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Fri Nov 29 08:14:33 2019 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bd5c4800

sci-chemistry/apbs: python_export_best → python_setup

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 sci-chemistry/apbs/apbs-1.4.1-r2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild b/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
index b3c4f192894..88910ddde99 100644
--- a/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
+++ b/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
@@ -106,7 +106,7 @@ src_compile(){
 }
 
 src_test() {
-	python_export_best
+	python_setup
 	cd tests || die
 	LD_LIBRARY_PATH="${S}"/lib "${PYTHON}" apbs_tester.py -l log || die
 	grep -q 'FAILED' log && die "Tests failed"