From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id D7BC5138334 for ; Sun, 24 Nov 2019 03:21:55 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 2FDF2E078A; Sun, 24 Nov 2019 03:21:54 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 0C97EE078A for ; Sun, 24 Nov 2019 03:21:54 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 8EF6034D2A0 for ; Sun, 24 Nov 2019 03:21:52 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id CEBAF8BE for ; Sun, 24 Nov 2019 03:21:50 +0000 (UTC) From: "Aaron Bauman" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Aaron Bauman" Message-ID: <1574565701.fb621d2dda799c17834b978fccc3b4073b828761.bman@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/psipred/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/psipred/Manifest sci-biology/psipred/psipred-3.2.1.ebuild sci-biology/psipred/psipred-3.3.ebuild X-VCS-Directories: sci-biology/psipred/ X-VCS-Committer: bman X-VCS-Committer-Name: Aaron Bauman X-VCS-Revision: fb621d2dda799c17834b978fccc3b4073b828761 X-VCS-Branch: master Date: Sun, 24 Nov 2019 03:21:50 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 69a6ffd0-597a-4314-baa9-89425893991e X-Archives-Hash: ecf875750b3c46d8424cfd81d01217ba commit: fb621d2dda799c17834b978fccc3b4073b828761 Author: Aaron Bauman gentoo org> AuthorDate: Sun Nov 24 03:09:28 2019 +0000 Commit: Aaron Bauman gentoo org> CommitDate: Sun Nov 24 03:21:41 2019 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fb621d2d sci-biology/psipred: drop old EAPI Signed-off-by: Aaron Bauman gentoo.org> sci-biology/psipred/Manifest | 2 -- sci-biology/psipred/psipred-3.2.1.ebuild | 51 ------------------------------ sci-biology/psipred/psipred-3.3.ebuild | 54 -------------------------------- 3 files changed, 107 deletions(-) diff --git a/sci-biology/psipred/Manifest b/sci-biology/psipred/Manifest index c3e796709fc..3dfae4734db 100644 --- a/sci-biology/psipred/Manifest +++ b/sci-biology/psipred/Manifest @@ -1,5 +1,3 @@ -DIST psipred3.3.tar.gz 1239746 BLAKE2B b1afa9a6a85f239e02b5affec3a6ff48281f962b94b5b6e5c2f4da496a8f73b3d5103a3e77908976a6423eebcfc4e54d2bcb8f7ab012859a115d6f21d580e9d2 SHA512 38f5dd0f6eb6fc38888f9a850604b95904a8626d6862eb0b2a389caaf49af8f81436aa78a087da22281113d8afad2d28e5109ddade7d17718c1028eed8325b7e DIST psipred3.4.tar.gz 1102416 BLAKE2B 9797f4181357bb26455253370aca39857c39a2c4bcd521b10a139784e6fd5dc9e14b76c11d99989ac33c3a01fb62807957f9969daa5ac9d928b0b4e83e943743 SHA512 1bc7ac41a213766139324540ba6952538f2890749ecf217d771b4ce59e25231857d38c237ea573674f11a82300750e9a3ff628ec0156864863a9528a144cd919 DIST psipred3.5.tar.gz 1101579 BLAKE2B 2fd86841cbc4bb86045b51f8283550832df8356ee88a6ef2c85281b5810debb23ac53652ddc5ffc9bd6f8e9e7248ce39ccee23400ff8fb49cd05b877d730b553 SHA512 a7b3f7d149f6a29cf0b48bdb900f6983d42af01132d8b54a7be88994d09fcf27dbe57115d41ec9654da6daf6898d5986d08fbdcefa3a4c81af0d358500cd40c2 -DIST psipred321.tar.gz 747151 BLAKE2B 8b58a2c45efc92e049622784e1ca39a622ecfb5f660554cf3a26ab9a7e85feb3e453935fca12f0a68328e5e736becdae737f80407730ea9315f4e79b19f71e8b SHA512 b742f5fd3151bd624452bf37761fa66d364ea5b28d9d005ae6ce6f52fc6f2b17df31d6f1e600bd6c57776a1812f22b1eafbca781b430811a010d74f157a75cd1 DIST tdbdata.tar.gz 40241247 BLAKE2B c85a2fde9b29a14e1da27be1a7ea5fe1704f72b66cd79514dd50a3a0d2d8aab9341f7d5075f6d1896cefa54ca83948387b902b38780181777dc505a9a15b4aab SHA512 f96d7ffbb77e129251e27f62b7f099d944bacd14935e03fc52c9f0b262cce1ad477ad43520a93b407951fb8f5dd3ba2e27ff6b5ae8a637ec03bc02f8c7c3990c diff --git a/sci-biology/psipred/psipred-3.2.1.ebuild b/sci-biology/psipred/psipred-3.2.1.ebuild deleted file mode 100644 index 1bcb5874463..00000000000 --- a/sci-biology/psipred/psipred-3.2.1.ebuild +++ /dev/null @@ -1,51 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=4 - -inherit eutils prefix toolchain-funcs versionator - -MY_P="${PN}$(delete_all_version_separators)" - -DESCRIPTION="Protein Secondary Structure Prediction" -HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/" -SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz" - -LICENSE="psipred" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="test" - -RDEPEND=" - sci-biology/ncbi-tools - sci-biology/update-blastdb" -DEPEND="" - -S="${WORKDIR}" - -src_prepare() { - rm -f bin/* - epatch \ - "${FILESDIR}"/3.1-Makefile.patch \ - "${FILESDIR}"/3.1-path.patch \ - "${FILESDIR}"/3.2-fgets.patch - eprefixify runpsipred* -} - -src_compile() { - emake -C src CC=$(tc-getCC) -} - -src_install() { - emake -C src DESTDIR="${D}" install - dobin runpsipred* bin/* BLAST+/runpsipred* - insinto /usr/share/${PN} - doins -r data - dodoc README - newdoc BLAST+/README README-blast -} - -pkg_postinst() { - elog "Please use the update_blastdb.pl in order to" - elog "maintain your own local blastdb" -} diff --git a/sci-biology/psipred/psipred-3.3.ebuild b/sci-biology/psipred/psipred-3.3.ebuild deleted file mode 100644 index 4e0b0102837..00000000000 --- a/sci-biology/psipred/psipred-3.3.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=4 - -inherit eutils prefix toolchain-funcs versionator - -#MY_P="${PN}$(delete_all_version_separators)" -MY_P="${PN}${PV}" - -DESCRIPTION="Protein Secondary Structure Prediction" -HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/" -SRC_URI=" - http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz - test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )" - -LICENSE="psipred" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="test" - -RDEPEND=" - sci-biology/ncbi-tools - sci-biology/update-blastdb" -DEPEND="" - -S="${WORKDIR}"/${PN} - -src_prepare() { - rm -f bin/* - epatch \ - "${FILESDIR}"/3.1-Makefile.patch \ - "${FILESDIR}"/3.1-path.patch \ - "${FILESDIR}"/3.2-fgets.patch - eprefixify runpsipred* - emake -C src clean -} - -src_compile() { - emake -C src CC=$(tc-getCC) -} - -src_install() { - emake -C src DESTDIR="${D}" install - dobin runpsipred* bin/* BLAST+/runpsipred* - insinto /usr/share/${PN} - doins -r data - dodoc README -} - -pkg_postinst() { - elog "Please use the update_blastdb.pl in order to" - elog "maintain your own local blastdb" -}