* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2019-06-04 17:47 Amy Liffey
0 siblings, 0 replies; 103+ messages in thread
From: Amy Liffey @ 2019-06-04 17:47 UTC (permalink / raw
To: gentoo-commits
commit: 50d096e6d14f2c60b6d7f07267f386b8fbfc702f
Author: Amy Liffey <amynka <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 4 17:41:45 2019 +0000
Commit: Amy Liffey <amynka <AT> gentoo <DOT> org>
CommitDate: Tue Jun 4 17:41:45 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=50d096e6
dev-lang/R: version bump 3.6.0
Bug: https://bugs.gentoo.org/684526
Signed-off-by: Amy Liffey <amynka <AT> gentoo.org>
Package-Manager: Portage-2.3.62, Repoman-2.3.11
dev-lang/R/Manifest | 1 +
dev-lang/R/R-3.6.0.ebuild | 205 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 206 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index ef092e2cf42..f85c3d58315 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -4,4 +4,5 @@ DIST R-3.3.2.tar.gz 29440670 BLAKE2B 37308fb0caf19c33196b496d5b6f2f1b5b6f75e3ed9
DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
DIST R-3.5.1.tar.gz 29812849 BLAKE2B 9390934e5da5bd223eee717d4e4c5bd7d47291811318b2fdeac59216081cf9e63119f17bc8fee7235e2426852c50eb5948e6a2a3a632047f41b36460e2584967 SHA512 382cc6e200469dd168799948edcf3a0b869d7ef3b3176fdfc60752f3f37e6ba356323c47d8815a4d9ab6ad3a21cd045d26ef5e75107c8685328e0ffcfd172f7f
DIST R-3.5.3.tar.gz 30205979 BLAKE2B 60dde4c1a7874df0b113630577d943d581d9e0844383a5cb7eda7f62470177d541704a888c33ded216f8b1f088cda493d7716693f5e2451effe3639ce2286dd1 SHA512 077cbd4bc9f19a3a2485afbd4d8e08e0754ddcb9a10164cbc8478f239d5ed0ffaf6796929f154cce1c8aea549c32d460049fc036dc326174d1dbb0a1ddb5f5ef
+DIST R-3.6.0.tar.gz 30449618 BLAKE2B 2fb2f1252f5ead97ab42eb1f71fa0be1e8aec2f6cce182956ec1c35b43b70b58f579faf5f3ca11efb8e9c24a9ed836b5b690cb23858249bc7f575aca4709bc3b SHA512 b2e17b909b6387abb964492e2e9370f913295ca7ac99bab0e965c43ed3c4635e27468c326fb2bca3c529b03c731b0170d9e777a194ad4d6c5a983c050223d8c8
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-3.6.0.ebuild b/dev-lang/R/R-3.6.0.ebuild
new file mode 100644
index 00000000000..39eee89799d
--- /dev/null
+++ b/dev-lang/R/R-3.6.0.ebuild
@@ -0,0 +1,205 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-3/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~ia64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+CDEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ >=dev-libs/libpcre-8.35:3=
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas:0
+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+DEPEND="${CDEPEND}
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+
+RDEPEND="${CDEPEND}
+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ if ! tc-check-openmp; then
+ ewarn "OpenMP is not available in your current selected compiler"
+ die "need openmp capable compiler"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4
+ eautoreconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
+ EOF
+ doenvd 99R
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2024-11-14 9:53 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2024-11-14 9:53 UTC (permalink / raw
To: gentoo-commits
commit: bce30b8b397083b25c41ae864cb189cf8776d764
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 14 09:52:47 2024 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Nov 14 09:52:47 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bce30b8b
dev-lang/R: add 4.4.2
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.4.2.ebuild | 248 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 249 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 216eb74b7d5c..0c010d2502ca 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,4 +1,5 @@
DIST R-4.3.1.tar.gz 34899964 BLAKE2B 7aaacad01ce59e2faa46c4b830c10d2df8e4a3a1d4f11cf2aa622ceb53876f1e702dff94a820ca954ec29f53d58fa7e135ef15e8257602c50f2642b0a0c0a86a SHA512 f571c378dbdd675e267ef4419bb1141198924dadc08297c93c8dff58504994604918b3e045bb7139ba473972a063a68ed1c7426f37d4e8208b79358561d34d77
DIST R-4.3.2.tar.gz 35039225 BLAKE2B 2de3af9013c8648c118a1efe673b618aef84a694c6865657faef5b0ca5f780ef5273bb00b607f587219ee30a11f01ccc3b730b9124847242b9d9550de471f58c SHA512 125114357f20d4a3248aee86727768d1dc15e07e44353f8a68fe2ef1fedae508e85d944301d00c0edd61e8b012b0b3cdcde53ac60be903713f96542d83ad5b1d
DIST R-4.4.1.tar.gz 37353459 BLAKE2B 2c44fcab719cc2a2cef4566fd4e6c22386f02827a41045ffa074ca2a6883089275354644bce47c9978ef5c96e7b9b21576e946500746c27dc00946ef3cde4fce SHA512 cc30172227b7d89a9d6e9d65c8622b2042bcbbf3f1b5e36c7460f60958a1a0589980a1867ec9989df2589c1618233f3382d4732700b147361ace3be6680b5643
+DIST R-4.4.2.tar.gz 37582785 BLAKE2B bda7e3d49c63095830d12d77bb91946c2e7b657895f3388b892ca29091dc6c23b42a6b7822910d6889f69715c3ad58f8031ab7a811f34efe0b352232e5135175 SHA512 b29d82242f70487f52849a5726610c03dffa4e54f1a32a9f3f76784fcf61f91d5c40cddee1029eeb9c9837ff26f382f348e8518dd68c84e9fc2192b981013d9a
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.4.2.ebuild b/dev-lang/R/R-4.4.2.ebuild
new file mode 100644
index 000000000000..0a76a168a41a
--- /dev/null
+++ b/dev-lang/R/R-4.4.2.ebuild
@@ -0,0 +1,248 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion:
+# https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="https://www.r-project.org/"
+SRC_URI="
+ https://cran.r-project.org/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
+IUSE="cairo doc icu java jpeg +libdeflate lto minimal nls openmp perl png prefix profile readline test tiff tk X"
+
+REQUIRED_USE="
+ png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )"
+RESTRICT="
+ minimal? ( test )
+ !test? ( test )"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+DEPEND="
+ app-arch/bzip2
+ app-arch/xz-utils
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ >=dev-libs/tre-0.8.0_p20210321[approx]
+ net-misc/curl
+ sys-libs/zlib[minizip]
+ sys-apps/coreutils
+ sys-libs/timezone-data
+ virtual/blas
+ virtual/lapack
+ cairo? (
+ x11-libs/cairo:=[X=]
+ x11-libs/pango:=
+ )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( media-libs/libjpeg-turbo:= )
+ kernel_linux? ( net-libs/libtirpc:= )
+ libdeflate? ( app-arch/libdeflate )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:= )
+ readline? ( sys-libs/readline:= )
+ tiff? ( media-libs/tiff:= )
+ tk? ( dev-lang/tk:= )
+ X? (
+ x11-libs/libX11
+ x11-libs/libXmu
+ x11-libs/libXt
+ )"
+RDEPEND="${DEPEND}
+ java? ( >=virtual/jre-1.8:* )"
+BDEPEND="
+ sys-apps/which
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+
+PATCHES=(
+ "${FILESDIR}"/R-4.3.0-parallel.patch
+ "${FILESDIR}"/R-4.3.0-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/R-4.3.0-no-gzip-doc.patch
+)
+
+# false positive, the linking step fails (as it should)
+QA_CONFIG_IMPL_DECL_SKIP=( iconvlist )
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ tc-check-openmp
+ FORTRAN_NEED_OPENMP=1
+ fi
+
+ fortran-2_pkg_setup
+
+ # avoid using existing R installation
+ unset R_HOME
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use perl &&
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+
+ # Fix for Darwin (macOS)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+
+ AT_M4DIR=m4 eautoreconf
+}
+
+src_configure() {
+ filter-ldflags -Wl,-Bdirect -Bdirect
+
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --disable-R-static-lib \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ --with-system-tre \
+ --without-aqua \
+ --without-newAccelerate \
+ $(use_enable java) \
+ $(use_enable lto lto R) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with libdeflate libdeflate-compression) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}"/fonts
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone shared AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ newenvd - 99R <<-_EOF_
+ LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
+ R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
+ _EOF_
+
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}"
+ done
+ popd >/dev/null || die
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ local INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ local INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x /usr/share/doc/${PF}/${f}
+ done
+
+ # Finally, an extra copy of this started showing up at some point...
+ rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2024-11-14 0:36 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2024-11-14 0:36 UTC (permalink / raw
To: gentoo-commits
commit: 81dd8996d8aa475939a38ac25024174c82419ee0
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 14 00:35:17 2024 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Thu Nov 14 00:35:17 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=81dd8996
dev-lang/R: Stabilize 4.4.1 amd64, #940022
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.4.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.4.1.ebuild b/dev-lang/R/R-4.4.1.ebuild
index 746399093395..a40ea16046c9 100644
--- a/dev-lang/R/R-4.4.1.ebuild
+++ b/dev-lang/R/R-4.4.1.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 arm64 ~hppa ~loong sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
+KEYWORDS="amd64 arm64 ~hppa ~loong sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
IUSE="cairo doc icu java jpeg +libdeflate lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2024-11-13 11:10 Arthur Zamarin
0 siblings, 0 replies; 103+ messages in thread
From: Arthur Zamarin @ 2024-11-13 11:10 UTC (permalink / raw
To: gentoo-commits
commit: b5ee5267217e5f96e226b3f416d0c707e25e7781
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Wed Nov 13 11:10:17 2024 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Wed Nov 13 11:10:17 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b5ee5267
dev-lang/R: Stabilize 4.4.1 arm64, #940022
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
dev-lang/R/R-4.4.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.4.1.ebuild b/dev-lang/R/R-4.4.1.ebuild
index 9692b16b1e68..746399093395 100644
--- a/dev-lang/R/R-4.4.1.ebuild
+++ b/dev-lang/R/R-4.4.1.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~loong sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
+KEYWORDS="~amd64 arm64 ~hppa ~loong sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
IUSE="cairo doc icu java jpeg +libdeflate lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2024-11-12 21:29 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2024-11-12 21:29 UTC (permalink / raw
To: gentoo-commits
commit: 9c846627d2c01145fb3e7beb46db97df62688913
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Tue Nov 12 21:29:08 2024 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Tue Nov 12 21:29:08 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9c846627
dev-lang/R: Stabilize 4.4.1 sparc, #940022
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.4.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.4.1.ebuild b/dev-lang/R/R-4.4.1.ebuild
index 0a76a168a41a..9692b16b1e68 100644
--- a/dev-lang/R/R-4.4.1.ebuild
+++ b/dev-lang/R/R-4.4.1.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
+KEYWORDS="~amd64 ~arm64 ~hppa ~loong sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
IUSE="cairo doc icu java jpeg +libdeflate lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2024-06-23 1:58 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2024-06-23 1:58 UTC (permalink / raw
To: gentoo-commits
commit: be5b8a10e2e385902611ef51ba1dfe1bd886a0c1
Author: Alfred Wingate <parona <AT> protonmail <DOT> com>
AuthorDate: Sun Jun 23 01:58:41 2024 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jun 23 01:58:41 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=be5b8a10
dev-lang/R: fixes for 4.4.1
* Lapack symbols (zspmv) required for Blas, therefore build with lapack
unconditionally.
* Add and enable by default libdeflate support to conform with upstream
defaults.
* Require timezone-data which is needed, it would be missing on non glibc
systems by default.
Closes: https://github.com/gentoo/gentoo/pull/36418
Bug: https://bugs.gentoo.org/922673
Signed-off-by: Alfred Wingate <parona <AT> protonmail.com>
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/R-4.4.1.ebuild | 18 ++++++++++--------
dev-lang/R/metadata.xml | 3 +++
2 files changed, 13 insertions(+), 8 deletions(-)
diff --git a/dev-lang/R/R-4.4.1.ebuild b/dev-lang/R/R-4.4.1.ebuild
index 3a4567f726de..6282a9ecd337 100644
--- a/dev-lang/R/R-4.4.1.ebuild
+++ b/dev-lang/R/R-4.4.1.ebuild
@@ -18,7 +18,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
+IUSE="cairo doc icu java jpeg +libdeflate lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
png? ( || ( cairo X ) )
@@ -37,23 +37,26 @@ DEPEND="
dev-libs/libpcre2:=
>=dev-libs/tre-0.8.0_p20210321[approx]
net-misc/curl
- virtual/blas
sys-libs/zlib[minizip]
sys-apps/coreutils
+ sys-libs/timezone-data
+ virtual/blas
+ virtual/lapack
cairo? (
x11-libs/cairo:=[X=]
x11-libs/pango:=
)
icu? ( dev-libs/icu:= )
jpeg? ( media-libs/libjpeg-turbo:= )
- kernel_linux? ( net-libs/libtirpc )
- lapack? ( virtual/lapack )
+ kernel_linux? ( net-libs/libtirpc:= )
+ libdeflate? ( app-arch/libdeflate )
perl? ( dev-lang/perl )
png? ( media-libs/libpng:= )
readline? ( sys-libs/readline:= )
tiff? ( media-libs/tiff:= )
tk? ( dev-lang/tk:= )
X? (
+ x11-libs/libX11
x11-libs/libXmu
x11-libs/libXt
)"
@@ -108,9 +111,6 @@ src_prepare() {
sed -e 's:\.\./manual/:manual/:g' \
-i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
- use lapack &&
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
use perl &&
export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
@@ -145,9 +145,11 @@ src_configure() {
--disable-R-framework \
--disable-R-static-lib \
--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" \
rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
--with-system-tre \
--without-aqua \
+ --without-newAccelerate \
$(use_enable java) \
$(use_enable lto lto R) \
$(use_enable nls) \
@@ -157,7 +159,7 @@ src_configure() {
$(use_with cairo) \
$(use_with icu ICU) \
$(use_with jpeg jpeglib) \
- $(use_with lapack) \
+ $(use_with libdeflate libdeflate-compression) \
$(use_with !minimal recommended-packages) \
$(use_with png libpng) \
$(use_with readline) \
diff --git a/dev-lang/R/metadata.xml b/dev-lang/R/metadata.xml
index c5ab836c4412..442394218fff 100644
--- a/dev-lang/R/metadata.xml
+++ b/dev-lang/R/metadata.xml
@@ -24,4 +24,7 @@
<upstream>
<remote-id type="github">wch/r-source</remote-id>
</upstream>
+ <use>
+ <flag name="libdeflate">Use <pkg>app-arch/libdeflate</pkg> rather than <pkg>sys-libs/zlib</pkg> for lazy-loaded R objects.</flag>
+ </use>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2024-06-23 1:48 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2024-06-23 1:48 UTC (permalink / raw
To: gentoo-commits
commit: e091733b36fe39f03f35aba21d1f0f57a7e5f605
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 23 01:48:27 2024 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jun 23 01:48:27 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e091733b
dev-lang/R: add 4.4.1
Closes: https://bugs.gentoo.org/930652
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.4.1.ebuild | 246 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 247 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 7aafccd7e1f5..216eb74b7d5c 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,4 @@
DIST R-4.3.1.tar.gz 34899964 BLAKE2B 7aaacad01ce59e2faa46c4b830c10d2df8e4a3a1d4f11cf2aa622ceb53876f1e702dff94a820ca954ec29f53d58fa7e135ef15e8257602c50f2642b0a0c0a86a SHA512 f571c378dbdd675e267ef4419bb1141198924dadc08297c93c8dff58504994604918b3e045bb7139ba473972a063a68ed1c7426f37d4e8208b79358561d34d77
DIST R-4.3.2.tar.gz 35039225 BLAKE2B 2de3af9013c8648c118a1efe673b618aef84a694c6865657faef5b0ca5f780ef5273bb00b607f587219ee30a11f01ccc3b730b9124847242b9d9550de471f58c SHA512 125114357f20d4a3248aee86727768d1dc15e07e44353f8a68fe2ef1fedae508e85d944301d00c0edd61e8b012b0b3cdcde53ac60be903713f96542d83ad5b1d
+DIST R-4.4.1.tar.gz 37353459 BLAKE2B 2c44fcab719cc2a2cef4566fd4e6c22386f02827a41045ffa074ca2a6883089275354644bce47c9978ef5c96e7b9b21576e946500746c27dc00946ef3cde4fce SHA512 cc30172227b7d89a9d6e9d65c8622b2042bcbbf3f1b5e36c7460f60958a1a0589980a1867ec9989df2589c1618233f3382d4732700b147361ace3be6680b5643
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.4.1.ebuild b/dev-lang/R/R-4.4.1.ebuild
new file mode 100644
index 000000000000..3a4567f726de
--- /dev/null
+++ b/dev-lang/R/R-4.4.1.ebuild
@@ -0,0 +1,246 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion:
+# https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="https://www.r-project.org/"
+SRC_URI="
+ https://cran.r-project.org/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
+
+REQUIRED_USE="
+ png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )"
+RESTRICT="
+ minimal? ( test )
+ !test? ( test )"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+DEPEND="
+ app-arch/bzip2
+ app-arch/xz-utils
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ >=dev-libs/tre-0.8.0_p20210321[approx]
+ net-misc/curl
+ virtual/blas
+ sys-libs/zlib[minizip]
+ sys-apps/coreutils
+ cairo? (
+ x11-libs/cairo:=[X=]
+ x11-libs/pango:=
+ )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( media-libs/libjpeg-turbo:= )
+ kernel_linux? ( net-libs/libtirpc )
+ lapack? ( virtual/lapack )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:= )
+ readline? ( sys-libs/readline:= )
+ tiff? ( media-libs/tiff:= )
+ tk? ( dev-lang/tk:= )
+ X? (
+ x11-libs/libXmu
+ x11-libs/libXt
+ )"
+RDEPEND="${DEPEND}
+ java? ( >=virtual/jre-1.8:* )"
+BDEPEND="
+ sys-apps/which
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+
+PATCHES=(
+ "${FILESDIR}"/R-4.3.0-parallel.patch
+ "${FILESDIR}"/R-4.3.0-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/R-4.3.0-no-gzip-doc.patch
+)
+
+# false positive, the linking step fails (as it should)
+QA_CONFIG_IMPL_DECL_SKIP=( iconvlist )
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ tc-check-openmp
+ FORTRAN_NEED_OPENMP=1
+ fi
+
+ fortran-2_pkg_setup
+
+ # avoid using existing R installation
+ unset R_HOME
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack &&
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ use perl &&
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+
+ # Fix for Darwin (macOS)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+
+ AT_M4DIR=m4 eautoreconf
+}
+
+src_configure() {
+ filter-ldflags -Wl,-Bdirect -Bdirect
+
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --disable-R-static-lib \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ --with-system-tre \
+ --without-aqua \
+ $(use_enable java) \
+ $(use_enable lto lto R) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}"/fonts
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone shared AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ newenvd - 99R <<-_EOF_
+ LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
+ R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
+ _EOF_
+
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}"
+ done
+ popd >/dev/null || die
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ local INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ local INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x /usr/share/doc/${PF}/${f}
+ done
+
+ # Finally, an extra copy of this started showing up at some point...
+ rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2024-01-26 12:23 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2024-01-26 12:23 UTC (permalink / raw
To: gentoo-commits
commit: dc11e9bfe5a8688c3c998917f85e29dbb831db17
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Fri Jan 26 12:23:06 2024 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Fri Jan 26 12:23:16 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=dc11e9bf
dev-lang/R: BDEPEND on which
`configure: error: which is required but missing`
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.3.1-r1.ebuild | 3 ++-
dev-lang/R/R-4.3.2-r1.ebuild | 3 ++-
2 files changed, 4 insertions(+), 2 deletions(-)
diff --git a/dev-lang/R/R-4.3.1-r1.ebuild b/dev-lang/R/R-4.3.1-r1.ebuild
index 1a0d799e0324..ae4ae9624145 100644
--- a/dev-lang/R/R-4.3.1-r1.ebuild
+++ b/dev-lang/R/R-4.3.1-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -60,6 +60,7 @@ DEPEND="
RDEPEND="${DEPEND}
java? ( >=virtual/jre-1.8:* )"
BDEPEND="
+ sys-apps/which
virtual/pkgconfig
doc? (
virtual/latex-base
diff --git a/dev-lang/R/R-4.3.2-r1.ebuild b/dev-lang/R/R-4.3.2-r1.ebuild
index 4d5f89e84df5..3a4567f726de 100644
--- a/dev-lang/R/R-4.3.2-r1.ebuild
+++ b/dev-lang/R/R-4.3.2-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -60,6 +60,7 @@ DEPEND="
RDEPEND="${DEPEND}
java? ( >=virtual/jre-1.8:* )"
BDEPEND="
+ sys-apps/which
virtual/pkgconfig
doc? (
virtual/latex-base
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-12-22 17:47 Arthur Zamarin
0 siblings, 0 replies; 103+ messages in thread
From: Arthur Zamarin @ 2023-12-22 17:47 UTC (permalink / raw
To: gentoo-commits
commit: 7bd113e8146ea48469ef8061322fc7bf2acf0bc4
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Fri Dec 22 17:46:15 2023 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Fri Dec 22 17:47:37 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7bd113e8
dev-lang/R: remove mention of app-misc/realpath
Bug: https://bugs.gentoo.org/908406
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
dev-lang/R/{R-4.3.1.ebuild => R-4.3.1-r1.ebuild} | 5 +----
dev-lang/R/{R-4.3.2.ebuild => R-4.3.2-r1.ebuild} | 5 +----
2 files changed, 2 insertions(+), 8 deletions(-)
diff --git a/dev-lang/R/R-4.3.1.ebuild b/dev-lang/R/R-4.3.1-r1.ebuild
similarity index 99%
rename from dev-lang/R/R-4.3.1.ebuild
rename to dev-lang/R/R-4.3.1-r1.ebuild
index 35b5a00630bd..1a0d799e0324 100644
--- a/dev-lang/R/R-4.3.1.ebuild
+++ b/dev-lang/R/R-4.3.1-r1.ebuild
@@ -39,10 +39,7 @@ DEPEND="
net-misc/curl
virtual/blas
sys-libs/zlib[minizip]
- || (
- sys-apps/coreutils
- app-misc/realpath
- )
+ sys-apps/coreutils
cairo? (
x11-libs/cairo:=[X=]
x11-libs/pango:=
diff --git a/dev-lang/R/R-4.3.2.ebuild b/dev-lang/R/R-4.3.2-r1.ebuild
similarity index 99%
rename from dev-lang/R/R-4.3.2.ebuild
rename to dev-lang/R/R-4.3.2-r1.ebuild
index fed391461734..4d5f89e84df5 100644
--- a/dev-lang/R/R-4.3.2.ebuild
+++ b/dev-lang/R/R-4.3.2-r1.ebuild
@@ -39,10 +39,7 @@ DEPEND="
net-misc/curl
virtual/blas
sys-libs/zlib[minizip]
- || (
- sys-apps/coreutils
- app-misc/realpath
- )
+ sys-apps/coreutils
cairo? (
x11-libs/cairo:=[X=]
x11-libs/pango:=
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-11-02 12:57 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2023-11-02 12:57 UTC (permalink / raw
To: gentoo-commits
commit: d9baaef07c8a46d331f156d87d35c2e827febc6b
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 2 12:57:29 2023 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Nov 2 12:57:29 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d9baaef0
dev-lang/R: add 4.3.2
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.3.2.ebuild | 248 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 249 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 8a29505056cc..7aafccd7e1f5 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,2 +1,3 @@
DIST R-4.3.1.tar.gz 34899964 BLAKE2B 7aaacad01ce59e2faa46c4b830c10d2df8e4a3a1d4f11cf2aa622ceb53876f1e702dff94a820ca954ec29f53d58fa7e135ef15e8257602c50f2642b0a0c0a86a SHA512 f571c378dbdd675e267ef4419bb1141198924dadc08297c93c8dff58504994604918b3e045bb7139ba473972a063a68ed1c7426f37d4e8208b79358561d34d77
+DIST R-4.3.2.tar.gz 35039225 BLAKE2B 2de3af9013c8648c118a1efe673b618aef84a694c6865657faef5b0ca5f780ef5273bb00b607f587219ee30a11f01ccc3b730b9124847242b9d9550de471f58c SHA512 125114357f20d4a3248aee86727768d1dc15e07e44353f8a68fe2ef1fedae508e85d944301d00c0edd61e8b012b0b3cdcde53ac60be903713f96542d83ad5b1d
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.3.2.ebuild b/dev-lang/R/R-4.3.2.ebuild
new file mode 100644
index 000000000000..fed391461734
--- /dev/null
+++ b/dev-lang/R/R-4.3.2.ebuild
@@ -0,0 +1,248 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion:
+# https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="https://www.r-project.org/"
+SRC_URI="
+ https://cran.r-project.org/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
+
+REQUIRED_USE="
+ png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )"
+RESTRICT="
+ minimal? ( test )
+ !test? ( test )"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+DEPEND="
+ app-arch/bzip2
+ app-arch/xz-utils
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ >=dev-libs/tre-0.8.0_p20210321[approx]
+ net-misc/curl
+ virtual/blas
+ sys-libs/zlib[minizip]
+ || (
+ sys-apps/coreutils
+ app-misc/realpath
+ )
+ cairo? (
+ x11-libs/cairo:=[X=]
+ x11-libs/pango:=
+ )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( media-libs/libjpeg-turbo:= )
+ kernel_linux? ( net-libs/libtirpc )
+ lapack? ( virtual/lapack )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:= )
+ readline? ( sys-libs/readline:= )
+ tiff? ( media-libs/tiff:= )
+ tk? ( dev-lang/tk:= )
+ X? (
+ x11-libs/libXmu
+ x11-libs/libXt
+ )"
+RDEPEND="${DEPEND}
+ java? ( >=virtual/jre-1.8:* )"
+BDEPEND="
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+
+PATCHES=(
+ "${FILESDIR}"/R-4.3.0-parallel.patch
+ "${FILESDIR}"/R-4.3.0-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/R-4.3.0-no-gzip-doc.patch
+)
+
+# false positive, the linking step fails (as it should)
+QA_CONFIG_IMPL_DECL_SKIP=( iconvlist )
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ tc-check-openmp
+ FORTRAN_NEED_OPENMP=1
+ fi
+
+ fortran-2_pkg_setup
+
+ # avoid using existing R installation
+ unset R_HOME
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack &&
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ use perl &&
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+
+ # Fix for Darwin (macOS)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+
+ AT_M4DIR=m4 eautoreconf
+}
+
+src_configure() {
+ filter-ldflags -Wl,-Bdirect -Bdirect
+
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --disable-R-static-lib \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ --with-system-tre \
+ --without-aqua \
+ $(use_enable java) \
+ $(use_enable lto lto R) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}"/fonts
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone shared AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ newenvd - 99R <<-_EOF_
+ LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
+ R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
+ _EOF_
+
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}"
+ done
+ popd >/dev/null || die
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ local INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ local INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x /usr/share/doc/${PF}/${f}
+ done
+
+ # Finally, an extra copy of this started showing up at some point...
+ rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-10-30 23:43 Michael Orlitzky
0 siblings, 0 replies; 103+ messages in thread
From: Michael Orlitzky @ 2023-10-30 23:43 UTC (permalink / raw
To: gentoo-commits
commit: ef47b7e59acfea4522bd411971521c48b70bc77b
Author: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
AuthorDate: Mon Oct 30 23:36:55 2023 +0000
Commit: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
CommitDate: Mon Oct 30 23:39:43 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ef47b7e5
dev-lang/R: eliminate pointless use of mirror://
The list of "cran" mirrors contains exactly one working mirror, and that
is the official upstream. Let's listen to the devmanual and inline that
location into SRC_URI.
Signed-off-by: Michael Orlitzky <mjo <AT> gentoo.org>
dev-lang/R/R-4.3.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.3.1.ebuild b/dev-lang/R/R-4.3.1.ebuild
index 54a13af61115..35b5a00630bd 100644
--- a/dev-lang/R/R-4.3.1.ebuild
+++ b/dev-lang/R/R-4.3.1.ebuild
@@ -12,7 +12,7 @@ BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
DESCRIPTION="Language and environment for statistical computing and graphics"
HOMEPAGE="https://www.r-project.org/"
SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
+ https://cran.r-project.org/src/base/R-4/${P}.tar.gz
https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-09-09 19:26 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2023-09-09 19:26 UTC (permalink / raw
To: gentoo-commits
commit: 13d8c46929e01d11398b0d366fb775d8ca6cfb35
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Sep 9 19:26:35 2023 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Sep 9 19:26:35 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=13d8c469
dev-lang/R: drop 4.3.0
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 1 -
dev-lang/R/R-4.3.0.ebuild | 247 ----------------------------------------------
2 files changed, 248 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index eba3d04375b7..8a29505056cc 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,2 @@
-DIST R-4.3.0.tar.gz 34821768 BLAKE2B 3505c8357419355fddb8aadbf0952c492e3e38d649d6261478d6187c94ff71110089ec0933a31dd2f7258e58a1d0864a68cb4d7b6cdefc54e5add55d0d62db10 SHA512 7f9bc8360818d7fdf05e26a4213df01468669514a4c2ad62dee358f53dcfa05a71ee72241db91fed59574c26d7caee5d3e0717637e1666daec99446e42c07813
DIST R-4.3.1.tar.gz 34899964 BLAKE2B 7aaacad01ce59e2faa46c4b830c10d2df8e4a3a1d4f11cf2aa622ceb53876f1e702dff94a820ca954ec29f53d58fa7e135ef15e8257602c50f2642b0a0c0a86a SHA512 f571c378dbdd675e267ef4419bb1141198924dadc08297c93c8dff58504994604918b3e045bb7139ba473972a063a68ed1c7426f37d4e8208b79358561d34d77
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.3.0.ebuild b/dev-lang/R/R-4.3.0.ebuild
deleted file mode 100644
index 54725bb77495..000000000000
--- a/dev-lang/R/R-4.3.0.ebuild
+++ /dev/null
@@ -1,247 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion:
-# https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="https://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 ~loong sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
-
-REQUIRED_USE="
- png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )"
-RESTRICT="
- minimal? ( test )
- !test? ( test )"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-DEPEND="
- app-arch/bzip2
- app-arch/xz-utils
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- >=dev-libs/tre-0.8.0_p20210321[approx]
- net-misc/curl
- virtual/blas
- sys-libs/zlib[minizip]
- || (
- sys-apps/coreutils
- app-misc/realpath
- )
- cairo? (
- x11-libs/cairo:=[X=]
- x11-libs/pango:=
- )
- icu? ( dev-libs/icu:= )
- jpeg? ( media-libs/libjpeg-turbo:= )
- kernel_linux? ( net-libs/libtirpc )
- lapack? ( virtual/lapack )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:= )
- readline? ( sys-libs/readline:= )
- tiff? ( media-libs/tiff:= )
- tk? ( dev-lang/tk:= )
- X? (
- x11-libs/libXmu
- x11-libs/libXt
- )"
-RDEPEND="${DEPEND}
- java? ( >=virtual/jre-1.8:* )"
-BDEPEND="
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-
-PATCHES=(
- "${FILESDIR}"/R-4.3.0-parallel.patch
- "${FILESDIR}"/R-4.3.0-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/R-4.3.0-no-gzip-doc.patch
-)
-
-# false positive, the linking step fails (as it should)
-QA_CONFIG_IMPL_DECL_SKIP=( iconvlist )
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- tc-check-openmp
- FORTRAN_NEED_OPENMP=1
- fi
-
- fortran-2_pkg_setup
-
- # avoid using existing R installation
- unset R_HOME
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack &&
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- use perl &&
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
-
- # Fix for Darwin (macOS)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
- fi
- fi
-
- AT_M4DIR=m4 eautoreconf
-}
-
-src_configure() {
- filter-ldflags -Wl,-Bdirect -Bdirect
-
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --disable-R-static-lib \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- --with-system-tre \
- $(use_enable java) \
- $(use_enable lto lto R) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}"/fonts
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone shared AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- newenvd - 99R <<-_EOF_
- LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
- R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
- _EOF_
-
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}"
- done
- popd >/dev/null || die
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- local INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- local INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x /usr/share/doc/${PF}/${f}
- done
-
- # Finally, an extra copy of this started showing up at some point...
- rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-09-09 19:24 Arthur Zamarin
0 siblings, 0 replies; 103+ messages in thread
From: Arthur Zamarin @ 2023-09-09 19:24 UTC (permalink / raw
To: gentoo-commits
commit: 06c14cc4d4781c6521207fe6918c89512c29e51b
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Sat Sep 9 19:23:45 2023 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Sat Sep 9 19:23:45 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=06c14cc4
dev-lang/R: Stabilize 4.3.1 sparc, #913676
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
dev-lang/R/R-4.3.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.3.1.ebuild b/dev-lang/R/R-4.3.1.ebuild
index c8b3bb1617ad..54a13af61115 100644
--- a/dev-lang/R/R-4.3.1.ebuild
+++ b/dev-lang/R/R-4.3.1.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 ~loong sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-09-09 19:24 Arthur Zamarin
0 siblings, 0 replies; 103+ messages in thread
From: Arthur Zamarin @ 2023-09-09 19:24 UTC (permalink / raw
To: gentoo-commits
commit: 64d56af7bdd65337811f5e34bb706f28e1e2bc29
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Sat Sep 9 19:23:40 2023 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Sat Sep 9 19:23:40 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=64d56af7
dev-lang/R: Stabilize 4.3.1 arm64, #913676
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
dev-lang/R/R-4.3.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.3.1.ebuild b/dev-lang/R/R-4.3.1.ebuild
index 19b9f109ee87..c8b3bb1617ad 100644
--- a/dev-lang/R/R-4.3.1.ebuild
+++ b/dev-lang/R/R-4.3.1.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-09-05 11:54 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2023-09-05 11:54 UTC (permalink / raw
To: gentoo-commits
commit: 1e6cce05678b12eceb58099e8a82fb3f8b4edec6
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 5 11:53:34 2023 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Tue Sep 5 11:53:34 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1e6cce05
dev-lang/R: Stabilize 4.3.1 amd64, #913676
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.3.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.3.1.ebuild b/dev-lang/R/R-4.3.1.ebuild
index aa5e48b575b8..19b9f109ee87 100644
--- a/dev-lang/R/R-4.3.1.ebuild
+++ b/dev-lang/R/R-4.3.1.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-09-05 9:27 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2023-09-05 9:27 UTC (permalink / raw
To: gentoo-commits
commit: ff8208c1af9adc057011d399f79bda63e9c14e83
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 5 09:27:45 2023 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Tue Sep 5 09:27:45 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ff8208c1
dev-lang/R: properly indent metadata.xml
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/metadata.xml | 52 ++++++++++++++++++++++++-------------------------
1 file changed, 25 insertions(+), 27 deletions(-)
diff --git a/dev-lang/R/metadata.xml b/dev-lang/R/metadata.xml
index be129488f84f..a1ef08b1f6c4 100644
--- a/dev-lang/R/metadata.xml
+++ b/dev-lang/R/metadata.xml
@@ -1,32 +1,30 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer type="project">
- <email>sci-mathematics@gentoo.org</email>
- <name>Gentoo Mathematics Project</name>
- </maintainer>
- <use>
- <flag name="lto">
- Use link-time optimization for R and its recommended packages.
- </flag>
- </use>
- <longdescription lang="en">
- R is GNU S, a system for statistical computation and graphics. It
- consists of a language plus a run-time environment with graphics, a
- debugger, access to certain system functions, and the ability to run
- programs stored in script files.
+ <maintainer type="project">
+ <email>sci-mathematics@gentoo.org</email>
+ <name>Gentoo Mathematics Project</name>
+ </maintainer>
+ <use>
+ <flag name="lto">Use link-time optimization for R and its recommended packages.</flag>
+ </use>
+ <longdescription lang="en">
+ R is GNU S, a system for statistical computation and graphics. It
+ consists of a language plus a run-time environment with graphics, a
+ debugger, access to certain system functions, and the ability to run
+ programs stored in script files.
- The core of R is an interpreted computer language which allows
- branching and looping as well as modular programming using functions.
- The R distribution contains functionality for a large number of
- statistical procedures such as: linear and generalized linear
- models, nonlinear regression models, time series analysis, classical
- parametric and nonparametric tests, clustering, smoothing and
- graphical data representations. Additional modules ("add-on
- packages") are available for a variety of specific purposes but are
- not distributed with this package.
- </longdescription>
- <upstream>
- <remote-id type="github">wch/r-source</remote-id>
- </upstream>
+ The core of R is an interpreted computer language which allows
+ branching and looping as well as modular programming using functions.
+ The R distribution contains functionality for a large number of
+ statistical procedures such as: linear and generalized linear
+ models, nonlinear regression models, time series analysis, classical
+ parametric and nonparametric tests, clustering, smoothing and
+ graphical data representations. Additional modules ("add-on
+ packages") are available for a variety of specific purposes but are
+ not distributed with this package.
+ </longdescription>
+ <upstream>
+ <remote-id type="github">wch/r-source</remote-id>
+ </upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-06-28 12:39 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2023-06-28 12:39 UTC (permalink / raw
To: gentoo-commits
commit: 79e74f958fe51c004a3dd3a2d35dc82fa21fc415
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 28 12:39:05 2023 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Wed Jun 28 12:39:05 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=79e74f95
dev-lang/R: ignore false positive '-Wimplicit-function-declaration'
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/R-4.3.0.ebuild | 3 +++
1 file changed, 3 insertions(+)
diff --git a/dev-lang/R/R-4.3.0.ebuild b/dev-lang/R/R-4.3.0.ebuild
index e061cc99a441..54725bb77495 100644
--- a/dev-lang/R/R-4.3.0.ebuild
+++ b/dev-lang/R/R-4.3.0.ebuild
@@ -76,6 +76,9 @@ PATCHES=(
"${FILESDIR}"/R-4.3.0-no-gzip-doc.patch
)
+# false positive, the linking step fails (as it should)
+QA_CONFIG_IMPL_DECL_SKIP=( iconvlist )
+
pkg_pretend() {
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-06-25 15:50 Arthur Zamarin
0 siblings, 0 replies; 103+ messages in thread
From: Arthur Zamarin @ 2023-06-25 15:50 UTC (permalink / raw
To: gentoo-commits
commit: bd1725952eb91bbaab5cd7123258e3ac56727d43
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 25 15:50:30 2023 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Sun Jun 25 15:50:30 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bd172595
dev-lang/R: Stabilize 4.3.0 amd64, #908850
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
dev-lang/R/R-4.3.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.3.0.ebuild b/dev-lang/R/R-4.3.0.ebuild
index ae5474fc0eb5..ca6b74443472 100644
--- a/dev-lang/R/R-4.3.0.ebuild
+++ b/dev-lang/R/R-4.3.0.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 arm64 ~hppa ~ia64 ~loong sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 ~loong sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-06-20 4:14 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2023-06-20 4:14 UTC (permalink / raw
To: gentoo-commits
commit: 6aad3ee96446c3e3576f9c6ad039a44fb0cac48b
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 20 04:14:12 2023 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Tue Jun 20 04:14:12 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6aad3ee9
dev-lang/R: Stabilize 4.3.0 sparc, #908850
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.3.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.3.0.ebuild b/dev-lang/R/R-4.3.0.ebuild
index 5d233e3baae8..ae5474fc0eb5 100644
--- a/dev-lang/R/R-4.3.0.ebuild
+++ b/dev-lang/R/R-4.3.0.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 arm64 ~hppa ~ia64 ~loong sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-06-20 4:14 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2023-06-20 4:14 UTC (permalink / raw
To: gentoo-commits
commit: 258525e4d1d192cb60380ff6d8e48c0132aca9ac
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 20 04:14:11 2023 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Tue Jun 20 04:14:11 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=258525e4
dev-lang/R: Stabilize 4.3.0 arm64, #908850
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.3.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.3.0.ebuild b/dev-lang/R/R-4.3.0.ebuild
index 974d22709605..5d233e3baae8 100644
--- a/dev-lang/R/R-4.3.0.ebuild
+++ b/dev-lang/R/R-4.3.0.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-05-11 9:23 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2023-05-11 9:23 UTC (permalink / raw
To: gentoo-commits
commit: 2db2dd019c600aabffcb1fa8d0014081e6cffa31
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu May 11 09:23:43 2023 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu May 11 09:23:43 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2db2dd01
dev-lang/R: add 4.3.0
Closes: https://bugs.gentoo.org/905815
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.3.0.ebuild | 244 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 245 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index c5bedc89e18b..cb99b76da339 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,4 +1,5 @@
DIST R-4.2.1.tar.gz 37601544 BLAKE2B b898262a05c92e125c36a661a89be34b1698177832002f7aa21ccfcf0b30a06481e2154eea9e77a94b1ad8ca35c7bc4aead2be99b862dca7450acee1bec6a99f SHA512 c1baf46d22304c425dde79301183f80f99f2752300137b0b6f902c3e55e2419d5e9185c97de6e3c840a38f6345a6c334aa24161656d4a7f6fa01570390f1122f
DIST R-4.2.2.tar.gz 33987014 BLAKE2B 083d07b055308451e32133d378abc4aea7dd6da341554dca96ed5863fe2bc937aa3faa94bbd8d3620d3e6e020f806975cbc375ca28c599bd645267b97b2a49d4 SHA512 abbf1c7d016f8e1a9a0c4ad5dee2509a164449da34729f3e98d99ad8678ab398005fb8ed20288d4a6ed1e46ad4c70ad246f31a1a07aab99ba8fc6a5f02e1a309
DIST R-4.2.3.tar.gz 34010655 BLAKE2B 688403c693de348bdc404c0ebc2df08d3415db216f6017beca8c0408dc70830239ba26ff89f020a249c8af6471363ed742f52c816da84aac8161ec4a522df405 SHA512 060bb4e1d1f1a5a0383a3b4372ac9247c0a20285020da17cebeb40ddc54da12d5f369ea243ea04d2c6970986fe22b3f9c37fbdfb3405cd8aa4f2353091ea9c5c
+DIST R-4.3.0.tar.gz 34821768 BLAKE2B 3505c8357419355fddb8aadbf0952c492e3e38d649d6261478d6187c94ff71110089ec0933a31dd2f7258e58a1d0864a68cb4d7b6cdefc54e5add55d0d62db10 SHA512 7f9bc8360818d7fdf05e26a4213df01468669514a4c2ad62dee358f53dcfa05a71ee72241db91fed59574c26d7caee5d3e0717637e1666daec99446e42c07813
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.3.0.ebuild b/dev-lang/R/R-4.3.0.ebuild
new file mode 100644
index 000000000000..974d22709605
--- /dev/null
+++ b/dev-lang/R/R-4.3.0.ebuild
@@ -0,0 +1,244 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion:
+# https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="https://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
+
+REQUIRED_USE="
+ png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )"
+RESTRICT="
+ minimal? ( test )
+ !test? ( test )"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+DEPEND="
+ app-arch/bzip2
+ app-arch/xz-utils
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ >=dev-libs/tre-0.8.0_p20210321[approx]
+ net-misc/curl
+ virtual/blas
+ sys-libs/zlib[minizip]
+ || (
+ sys-apps/coreutils
+ app-misc/realpath
+ )
+ cairo? (
+ x11-libs/cairo:=[X=]
+ x11-libs/pango:=
+ )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( media-libs/libjpeg-turbo:= )
+ kernel_linux? ( net-libs/libtirpc )
+ lapack? ( virtual/lapack )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:= )
+ readline? ( sys-libs/readline:= )
+ tiff? ( media-libs/tiff:= )
+ tk? ( dev-lang/tk:= )
+ X? (
+ x11-libs/libXmu
+ x11-libs/libXt
+ )"
+RDEPEND="${DEPEND}
+ java? ( >=virtual/jre-1.8:* )"
+BDEPEND="
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+
+PATCHES=(
+ "${FILESDIR}"/R-3.4.1-parallel.patch
+ "${FILESDIR}"/R-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/R-3.6.2-no-gzip-doc.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ tc-check-openmp
+ FORTRAN_NEED_OPENMP=1
+ fi
+
+ fortran-2_pkg_setup
+
+ # avoid using existing R installation
+ unset R_HOME
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack &&
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ use perl &&
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+
+ # Fix for Darwin (macOS)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+
+ AT_M4DIR=m4 eautoreconf
+}
+
+src_configure() {
+ filter-ldflags -Wl,-Bdirect -Bdirect
+
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --disable-R-static-lib \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ --with-system-tre \
+ $(use_enable java) \
+ $(use_enable lto lto R) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}"/fonts
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone shared AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ newenvd - 99R <<-_EOF_
+ LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
+ R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
+ _EOF_
+
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}"
+ done
+ popd >/dev/null || die
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ local INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ local INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x /usr/share/doc/${PF}/${f}
+ done
+
+ # Finally, an extra copy of this started showing up at some point...
+ rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-05-06 9:52 Arthur Zamarin
0 siblings, 0 replies; 103+ messages in thread
From: Arthur Zamarin @ 2023-05-06 9:52 UTC (permalink / raw
To: gentoo-commits
commit: 180c8d3c7c5c275878602f21ea66495e67ccf8c9
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Sat May 6 09:51:53 2023 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Sat May 6 09:51:53 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=180c8d3c
dev-lang/R: Stabilize 4.2.3 x86, #905144
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
dev-lang/R/R-4.2.3.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.3.ebuild b/dev-lang/R/R-4.2.3.ebuild
index 9f94b563f46b..352d1b8e7f62 100644
--- a/dev-lang/R/R-4.2.3.ebuild
+++ b/dev-lang/R/R-4.2.3.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 ~loong sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 ~loong sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-05-06 9:52 Arthur Zamarin
0 siblings, 0 replies; 103+ messages in thread
From: Arthur Zamarin @ 2023-05-06 9:52 UTC (permalink / raw
To: gentoo-commits
commit: b1b62615c0a237beedb4c7380f95f35402d25e97
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Sat May 6 09:51:50 2023 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Sat May 6 09:51:50 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b1b62615
dev-lang/R: Stabilize 4.2.3 arm64, #905144
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
dev-lang/R/R-4.2.3.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.3.ebuild b/dev-lang/R/R-4.2.3.ebuild
index ec2a8e6cd4d4..9f94b563f46b 100644
--- a/dev-lang/R/R-4.2.3.ebuild
+++ b/dev-lang/R/R-4.2.3.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~loong sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 ~loong sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-05-06 9:51 Arthur Zamarin
0 siblings, 0 replies; 103+ messages in thread
From: Arthur Zamarin @ 2023-05-06 9:51 UTC (permalink / raw
To: gentoo-commits
commit: 163afea3d3e28c88ff5e7091492e7b8b968f41ee
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Sat May 6 09:51:21 2023 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Sat May 6 09:51:21 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=163afea3
dev-lang/R: Stabilize 4.2.3 sparc, #905144
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
dev-lang/R/R-4.2.3.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.3.ebuild b/dev-lang/R/R-4.2.3.ebuild
index 3f7cb8f4f773..ec2a8e6cd4d4 100644
--- a/dev-lang/R/R-4.2.3.ebuild
+++ b/dev-lang/R/R-4.2.3.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~loong sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-04-27 6:39 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2023-04-27 6:39 UTC (permalink / raw
To: gentoo-commits
commit: 921ecff751d2838dee3475f0fae64a9da714fb10
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 27 06:39:29 2023 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Thu Apr 27 06:39:40 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=921ecff7
dev-lang/R: Stabilize 4.2.3 amd64, #905144
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.2.3.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.3.ebuild b/dev-lang/R/R-4.2.3.ebuild
index 5fa0d6b05b51..3f7cb8f4f773 100644
--- a/dev-lang/R/R-4.2.3.ebuild
+++ b/dev-lang/R/R-4.2.3.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-03-24 20:21 Michael Orlitzky
0 siblings, 0 replies; 103+ messages in thread
From: Michael Orlitzky @ 2023-03-24 20:21 UTC (permalink / raw
To: gentoo-commits
commit: 3db2c60c9cd218dabe6673188e35eda0e25ab719
Author: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
AuthorDate: Fri Mar 24 20:05:31 2023 +0000
Commit: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
CommitDate: Fri Mar 24 20:19:41 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3db2c60c
dev-lang/R: add 4.2.3
I've also dropped R-3.4.1-rmath-shared.patch in this version. It was
rejected upstream as-is, and while I thought there was an --as-needed
fix hidden in there, I was apparently mistaken. It builds fine now
without the patch.
Signed-off-by: Michael Orlitzky <mjo <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.2.3.ebuild | 247 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 248 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index b3d53118aec4..c5bedc89e18b 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,4 @@
DIST R-4.2.1.tar.gz 37601544 BLAKE2B b898262a05c92e125c36a661a89be34b1698177832002f7aa21ccfcf0b30a06481e2154eea9e77a94b1ad8ca35c7bc4aead2be99b862dca7450acee1bec6a99f SHA512 c1baf46d22304c425dde79301183f80f99f2752300137b0b6f902c3e55e2419d5e9185c97de6e3c840a38f6345a6c334aa24161656d4a7f6fa01570390f1122f
DIST R-4.2.2.tar.gz 33987014 BLAKE2B 083d07b055308451e32133d378abc4aea7dd6da341554dca96ed5863fe2bc937aa3faa94bbd8d3620d3e6e020f806975cbc375ca28c599bd645267b97b2a49d4 SHA512 abbf1c7d016f8e1a9a0c4ad5dee2509a164449da34729f3e98d99ad8678ab398005fb8ed20288d4a6ed1e46ad4c70ad246f31a1a07aab99ba8fc6a5f02e1a309
+DIST R-4.2.3.tar.gz 34010655 BLAKE2B 688403c693de348bdc404c0ebc2df08d3415db216f6017beca8c0408dc70830239ba26ff89f020a249c8af6471363ed742f52c816da84aac8161ec4a522df405 SHA512 060bb4e1d1f1a5a0383a3b4372ac9247c0a20285020da17cebeb40ddc54da12d5f369ea243ea04d2c6970986fe22b3f9c37fbdfb3405cd8aa4f2353091ea9c5c
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.2.3.ebuild b/dev-lang/R/R-4.2.3.ebuild
new file mode 100644
index 000000000000..f07363fe354d
--- /dev/null
+++ b/dev-lang/R/R-4.2.3.ebuild
@@ -0,0 +1,247 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion:
+# https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="https://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
+
+REQUIRED_USE="
+ png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )"
+RESTRICT="
+ minimal? ( test )
+ !test? ( test )"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+DEPEND="
+ app-arch/bzip2
+ app-arch/xz-utils
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ >=dev-libs/tre-0.8.0_p20210321[approx]
+ net-misc/curl
+ virtual/blas
+ sys-libs/zlib[minizip]
+ || (
+ sys-apps/coreutils
+ app-misc/realpath
+ )
+ cairo? (
+ x11-libs/cairo:=[X=]
+ x11-libs/pango:=
+ )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( media-libs/libjpeg-turbo:= )
+ kernel_linux? ( net-libs/libtirpc )
+ lapack? ( virtual/lapack )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:= )
+ readline? ( sys-libs/readline:= )
+ tiff? ( media-libs/tiff:= )
+ tk? ( dev-lang/tk:= )
+ X? (
+ x11-libs/libXmu
+ x11-libs/libXt
+ )"
+RDEPEND="${DEPEND}
+ java? ( >=virtual/jre-1.8:* )"
+BDEPEND="
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+
+PATCHES=(
+ "${FILESDIR}"/R-3.4.1-parallel.patch
+ "${FILESDIR}"/R-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/R-3.6.2-no-gzip-doc.patch
+ "${FILESDIR}"/R-4.2.2-browser-pdf-prefs.patch
+ "${FILESDIR}"/R-4.2.2-isspace-without-readline.patch
+ "${FILESDIR}/"R-4.2.2-parallel-rmath-h-install.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ tc-check-openmp
+ FORTRAN_NEED_OPENMP=1
+ fi
+
+ fortran-2_pkg_setup
+
+ # avoid using existing R installation
+ unset R_HOME
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack &&
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ use perl &&
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+
+ # Fix for Darwin (macOS)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+
+ AT_M4DIR=m4 eautoreconf
+}
+
+src_configure() {
+ filter-ldflags -Wl,-Bdirect -Bdirect
+
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --disable-R-static-lib \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ --with-system-tre \
+ $(use_enable java) \
+ $(use_enable lto lto R) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}"/fonts
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone shared AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ newenvd - 99R <<-_EOF_
+ LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
+ R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
+ _EOF_
+
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}"
+ done
+ popd >/dev/null || die
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ local INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ local INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x /usr/share/doc/${PF}/${f}
+ done
+
+ # Finally, an extra copy of this started showing up at some point...
+ rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2023-03-07 3:46 WANG Xuerui
0 siblings, 0 replies; 103+ messages in thread
From: WANG Xuerui @ 2023-03-07 3:46 UTC (permalink / raw
To: gentoo-commits
commit: 5c4853d79254dc2ec703f07d4b53a50dcf576616
Author: WANG Xuerui <xen0n <AT> gentoo <DOT> org>
AuthorDate: Tue Mar 7 02:40:46 2023 +0000
Commit: WANG Xuerui <xen0n <AT> gentoo <DOT> org>
CommitDate: Tue Mar 7 03:40:19 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5c4853d7
dev-lang/R: keyword 4.2.2 for ~loong
Signed-off-by: WANG Xuerui <xen0n <AT> gentoo.org>
dev-lang/R/R-4.2.2.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/dev-lang/R/R-4.2.2.ebuild b/dev-lang/R/R-4.2.2.ebuild
index 3d3cbf497f10..0ccb36ebf04c 100644
--- a/dev-lang/R/R-4.2.2.ebuild
+++ b/dev-lang/R/R-4.2.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -17,7 +17,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-11-22 7:57 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2022-11-22 7:57 UTC (permalink / raw
To: gentoo-commits
commit: 1c28bf64f74fad8c4dfb3856390c513e71d26f9d
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Tue Nov 22 07:19:01 2022 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Tue Nov 22 07:57:05 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1c28bf64
dev-lang/R: add github upstream metadata
Mirror but it's by someone from rstdio and motivation is to make
looking up code easier.
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/metadata.xml | 3 +++
1 file changed, 3 insertions(+)
diff --git a/dev-lang/R/metadata.xml b/dev-lang/R/metadata.xml
index 775b0dcb2af0..be129488f84f 100644
--- a/dev-lang/R/metadata.xml
+++ b/dev-lang/R/metadata.xml
@@ -26,4 +26,7 @@
packages") are available for a variety of specific purposes but are
not distributed with this package.
</longdescription>
+ <upstream>
+ <remote-id type="github">wch/r-source</remote-id>
+ </upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-10-26 22:16 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2022-10-26 22:16 UTC (permalink / raw
To: gentoo-commits
commit: cbbe90010a5b4d6cf6db8503c31f048717d53860
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Wed Oct 26 22:16:37 2022 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Wed Oct 26 22:16:47 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cbbe9001
dev-lang/R: make libtirpc dep linux-only
Unnecessary on macOS.
Bug: https://bugs.gentoo.org/878101
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.2.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.1.ebuild b/dev-lang/R/R-4.2.1.ebuild
index 1ee01869a453..0fda9d9aacd0 100644
--- a/dev-lang/R/R-4.2.1.ebuild
+++ b/dev-lang/R/R-4.2.1.ebuild
@@ -35,7 +35,6 @@ DEPEND="
app-text/ghostscript-gpl
dev-libs/libpcre2:=
>=dev-libs/tre-0.8.0_p20210321[approx]
- net-libs/libtirpc
net-misc/curl
virtual/blas
sys-libs/zlib[minizip]
@@ -49,6 +48,7 @@ DEPEND="
)
icu? ( dev-libs/icu:= )
jpeg? ( media-libs/libjpeg-turbo:= )
+ kernel_linux? ( net-libs/libtirpc )
lapack? ( virtual/lapack )
perl? ( dev-lang/perl )
png? ( media-libs/libpng:= )
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-09-01 9:19 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2022-09-01 9:19 UTC (permalink / raw
To: gentoo-commits
commit: 7e99df1dab52b8b73ee252e80f5effaa630414c7
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 1 09:19:34 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Sep 1 09:19:34 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7e99df1d
dev-lang/R: drop 4.2.0
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 1 -
dev-lang/R/R-4.2.0.ebuild | 256 ----------------------------------------------
2 files changed, 257 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 22bcd1fa7d38..8895d614d77a 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,2 @@
-DIST R-4.2.0.tar.gz 37585694 BLAKE2B 5ba4d3b9397e92b72af729d88ff562655e0dd7c547bd371638aa76d4f1701f4f8a7911d500cf4f10d87b62457f8f8ce7a946d893477ceb7268b06bd59bc10f3d SHA512 99e71dad00b63e44bfcb8dc9539ff1951809112882d9ee7e06a4e99bce2e6ceac24e8348fd598c21e6d5ab0e0629a85170cde208bfa8145af91c398ac4ef7bcd
DIST R-4.2.1.tar.gz 37601544 BLAKE2B b898262a05c92e125c36a661a89be34b1698177832002f7aa21ccfcf0b30a06481e2154eea9e77a94b1ad8ca35c7bc4aead2be99b862dca7450acee1bec6a99f SHA512 c1baf46d22304c425dde79301183f80f99f2752300137b0b6f902c3e55e2419d5e9185c97de6e3c840a38f6345a6c334aa24161656d4a7f6fa01570390f1122f
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.2.0.ebuild b/dev-lang/R/R-4.2.0.ebuild
deleted file mode 100644
index cf1c175b7af2..000000000000
--- a/dev-lang/R/R-4.2.0.ebuild
+++ /dev/null
@@ -1,256 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="https://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
-
-REQUIRED_USE="
- png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )"
-RESTRICT="
- minimal? ( test )
- !test? ( test )"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-BDEPEND="
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-DEPEND="
- app-arch/bzip2
- app-arch/xz-utils
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- >=dev-libs/tre-0.8.0_p20210321[approx]
- net-libs/libtirpc
- net-misc/curl
- virtual/blas
- sys-libs/zlib[minizip]
- || (
- sys-apps/coreutils
- app-misc/realpath
- )
- cairo? (
- x11-libs/cairo:=[X=]
- x11-libs/pango:=
- )
- icu? ( dev-libs/icu:= )
- jpeg? ( media-libs/libjpeg-turbo:= )
- lapack? ( virtual/lapack )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:= )
- readline? ( sys-libs/readline:= )
- tiff? ( media-libs/tiff:= )
- tk? ( dev-lang/tk:= )
- X? (
- x11-libs/libXmu
- x11-libs/libXt
- x11-misc/xdg-utils
- )"
-RDEPEND="${DEPEND}
- java? ( >=virtual/jre-1.8:* )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- tc-check-openmp
- FORTRAN_NEED_OPENMP=1
- fi
-
- fortran-2_pkg_setup
-
- # avoid using existing R installation
- unset R_HOME
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- # Disable this test until it passes again,
- # https://bugs.r-project.org/show_bug.cgi?id=18338
- sed -e 's/ reg-packages.R / /' \
- -i tests/Makefile.common || die
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
-
- # Fix for Darwin (macOS)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
- fi
- fi
-
- AT_M4DIR=m4 eautoreconf
-}
-
-src_configure() {
- filter-ldflags -Wl,-Bdirect -Bdirect
-
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --disable-R-static-lib \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- --with-system-tre \
- $(use_enable java) \
- $(use_enable lto lto R) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}"/fonts
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone shared AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- newenvd - 99R <<-_EOF_
- LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EPREFIX}/usr/$(get_libdir)/${PN}
- _EOF_
-
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd >/dev/null || die
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- local INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- local INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
-
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x "/usr/share/doc/${PF}/${f}"
- done
-
- # Finally, an extra copy of this started showing up at some point...
- rm "${ED}/usr/$(get_libdir)/R/COPYING" || die
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-09-01 8:47 Agostino Sarubbo
0 siblings, 0 replies; 103+ messages in thread
From: Agostino Sarubbo @ 2022-09-01 8:47 UTC (permalink / raw
To: gentoo-commits
commit: ff5ef68d7962be04887df2122808065bb2af1cf2
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 1 08:47:50 2022 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Thu Sep 1 08:47:50 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ff5ef68d
dev-lang/R: x86 stable wrt bug #867418
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
dev-lang/R/R-4.2.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.1.ebuild b/dev-lang/R/R-4.2.1.ebuild
index 281c8e03d09f..cfb2a07ff6bc 100644
--- a/dev-lang/R/R-4.2.1.ebuild
+++ b/dev-lang/R/R-4.2.1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-08-30 16:09 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2022-08-30 16:09 UTC (permalink / raw
To: gentoo-commits
commit: 7709e23d5eac9e43fe3c2315489accbf6022adea
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 30 16:09:11 2022 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Tue Aug 30 16:09:11 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7709e23d
dev-lang/R: Stabilize 4.2.1 amd64, #867418
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.2.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.1.ebuild b/dev-lang/R/R-4.2.1.ebuild
index 2722988fa762..281c8e03d09f 100644
--- a/dev-lang/R/R-4.2.1.ebuild
+++ b/dev-lang/R/R-4.2.1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 arm64 ~hppa ~ia64 sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-08-30 11:48 Arthur Zamarin
0 siblings, 0 replies; 103+ messages in thread
From: Arthur Zamarin @ 2022-08-30 11:48 UTC (permalink / raw
To: gentoo-commits
commit: 406b043ee689e53b255156a79e249331e639511f
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 30 11:48:34 2022 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Tue Aug 30 11:48:34 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=406b043e
dev-lang/R: Stabilize 4.2.1 sparc, #867418
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
dev-lang/R/R-4.2.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.1.ebuild b/dev-lang/R/R-4.2.1.ebuild
index 0e287c705ea5..2722988fa762 100644
--- a/dev-lang/R/R-4.2.1.ebuild
+++ b/dev-lang/R/R-4.2.1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 arm64 ~hppa ~ia64 sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-08-30 11:09 Arthur Zamarin
0 siblings, 0 replies; 103+ messages in thread
From: Arthur Zamarin @ 2022-08-30 11:09 UTC (permalink / raw
To: gentoo-commits
commit: 2f171e28c4ec0c353fcb6488da1e18ff2034995d
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 30 11:09:15 2022 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Tue Aug 30 11:09:15 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2f171e28
dev-lang/R: Stabilize 4.2.1 arm64, #867418
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
dev-lang/R/R-4.2.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.1.ebuild b/dev-lang/R/R-4.2.1.ebuild
index bdc4ef782ed2..0e287c705ea5 100644
--- a/dev-lang/R/R-4.2.1.ebuild
+++ b/dev-lang/R/R-4.2.1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-07-13 18:12 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2022-07-13 18:12 UTC (permalink / raw
To: gentoo-commits
commit: efe0146dc37c4c0182fdd1baebddc99500b0a050
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Wed Jul 13 18:12:05 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Wed Jul 13 18:12:05 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=efe0146d
dev-lang/R: add 4.2.1
Closes: https://bugs.gentoo.org/856622
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.2.1.ebuild | 254 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 255 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 14992cf3742a..22bcd1fa7d38 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,2 +1,3 @@
DIST R-4.2.0.tar.gz 37585694 BLAKE2B 5ba4d3b9397e92b72af729d88ff562655e0dd7c547bd371638aa76d4f1701f4f8a7911d500cf4f10d87b62457f8f8ce7a946d893477ceb7268b06bd59bc10f3d SHA512 99e71dad00b63e44bfcb8dc9539ff1951809112882d9ee7e06a4e99bce2e6ceac24e8348fd598c21e6d5ab0e0629a85170cde208bfa8145af91c398ac4ef7bcd
+DIST R-4.2.1.tar.gz 37601544 BLAKE2B b898262a05c92e125c36a661a89be34b1698177832002f7aa21ccfcf0b30a06481e2154eea9e77a94b1ad8ca35c7bc4aead2be99b862dca7450acee1bec6a99f SHA512 c1baf46d22304c425dde79301183f80f99f2752300137b0b6f902c3e55e2419d5e9185c97de6e3c840a38f6345a6c334aa24161656d4a7f6fa01570390f1122f
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.2.1.ebuild b/dev-lang/R/R-4.2.1.ebuild
new file mode 100644
index 000000000000..bdc4ef782ed2
--- /dev/null
+++ b/dev-lang/R/R-4.2.1.ebuild
@@ -0,0 +1,254 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="https://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
+
+REQUIRED_USE="
+ png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )"
+RESTRICT="
+ minimal? ( test )
+ !test? ( test )"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+DEPEND="
+ app-arch/bzip2
+ app-arch/xz-utils
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ >=dev-libs/tre-0.8.0_p20210321[approx]
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas
+ sys-libs/zlib[minizip]
+ || (
+ sys-apps/coreutils
+ app-misc/realpath
+ )
+ cairo? (
+ x11-libs/cairo:=[X=]
+ x11-libs/pango:=
+ )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( media-libs/libjpeg-turbo:= )
+ lapack? ( virtual/lapack )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:= )
+ readline? ( sys-libs/readline:= )
+ tiff? ( media-libs/tiff:= )
+ tk? ( dev-lang/tk:= )
+ X? (
+ x11-libs/libXmu
+ x11-libs/libXt
+ x11-misc/xdg-utils
+ )"
+RDEPEND="${DEPEND}
+ java? ( >=virtual/jre-1.8:* )"
+BDEPEND="
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ tc-check-openmp
+ FORTRAN_NEED_OPENMP=1
+ fi
+
+ fortran-2_pkg_setup
+
+ # avoid using existing R installation
+ unset R_HOME
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ # Disable this test until it passes again,
+ # https://bugs.r-project.org/show_bug.cgi?id=18338
+ sed -e 's/ reg-packages.R / /' \
+ -i tests/Makefile.common || die
+
+ use lapack &&
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl &&
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+
+ # Fix for Darwin (macOS)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+
+ AT_M4DIR=m4 eautoreconf
+}
+
+src_configure() {
+ filter-ldflags -Wl,-Bdirect -Bdirect
+
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --disable-R-static-lib \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ --with-system-tre \
+ $(use_enable java) \
+ $(use_enable lto lto R) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}"/fonts
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone shared AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ newenvd - 99R <<-_EOF_
+ LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
+ R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
+ _EOF_
+
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}"
+ done
+ popd >/dev/null || die
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ local INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ local INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x /usr/share/doc/${PF}/${f}
+ done
+
+ # Finally, an extra copy of this started showing up at some point...
+ rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-06-19 8:09 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2022-06-19 8:09 UTC (permalink / raw
To: gentoo-commits
commit: c3aa5c3fb2b658ec7e4793fff628f5c2f627da9e
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 19 08:08:39 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jun 19 08:08:39 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c3aa5c3f
dev-lang/R: update jpeg dep
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/R-4.2.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.0.ebuild b/dev-lang/R/R-4.2.0.ebuild
index 1ad97eea887e..cf1c175b7af2 100644
--- a/dev-lang/R/R-4.2.0.ebuild
+++ b/dev-lang/R/R-4.2.0.ebuild
@@ -55,7 +55,7 @@ DEPEND="
x11-libs/pango:=
)
icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg )
+ jpeg? ( media-libs/libjpeg-turbo:= )
lapack? ( virtual/lapack )
perl? ( dev-lang/perl )
png? ( media-libs/libpng:= )
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-06-19 8:09 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2022-06-19 8:09 UTC (permalink / raw
To: gentoo-commits
commit: bd973b3a8ebd9c5040666f6376bd52deb813b203
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 19 08:08:38 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jun 19 08:08:38 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bd973b3a
dev-lang/R: drop 4.1.2-r1
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 1 -
dev-lang/R/R-4.1.2-r1.ebuild | 250 -------------------------------------------
2 files changed, 251 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index e0f5649bf8e5..14992cf3742a 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,2 @@
-DIST R-4.1.2.tar.gz 34009074 BLAKE2B 7ca14b28fc40548180dde979d57f93f41fb3966697d58f686cf63e24e4cbf2de8166240952e708fc94f97846cd57bbd559b4edb688500e1db2a6704de16f508c SHA512 657c7950a88f632f1bbb08dbd0b3fb485732a25d8bbcb8a7939a40b23c7a235fdb9b46c296acaa9f72eabebe96e270ecbdcd7970fc9d3a299e6687bea45f2d3f
DIST R-4.2.0.tar.gz 37585694 BLAKE2B 5ba4d3b9397e92b72af729d88ff562655e0dd7c547bd371638aa76d4f1701f4f8a7911d500cf4f10d87b62457f8f8ce7a946d893477ceb7268b06bd59bc10f3d SHA512 99e71dad00b63e44bfcb8dc9539ff1951809112882d9ee7e06a4e99bce2e6ceac24e8348fd598c21e6d5ab0e0629a85170cde208bfa8145af91c398ac4ef7bcd
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.1.2-r1.ebuild b/dev-lang/R/R-4.1.2-r1.ebuild
deleted file mode 100644
index 4a37a3f4aad8..000000000000
--- a/dev-lang/R/R-4.1.2-r1.ebuild
+++ /dev/null
@@ -1,250 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="https://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
-
-REQUIRED_USE="
- png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )"
-RESTRICT="
- minimal? ( test )
- !test? ( test )"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-BDEPEND="
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-DEPEND="
- app-arch/bzip2
- app-arch/xz-utils
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- >=dev-libs/tre-0.8.0_p20210321[approx]
- net-libs/libtirpc
- net-misc/curl
- virtual/blas
- sys-libs/zlib[minizip]
- || (
- sys-apps/coreutils
- app-misc/realpath
- )
- cairo? (
- x11-libs/cairo:=[X=]
- x11-libs/pango:=
- )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg )
- lapack? ( virtual/lapack )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:= )
- readline? ( sys-libs/readline:= )
- tiff? ( media-libs/tiff:= )
- tk? ( dev-lang/tk:= )
- X? (
- x11-libs/libXmu
- x11-libs/libXt
- x11-misc/xdg-utils
- )"
-RDEPEND="${DEPEND}
- java? ( >=virtual/jre-1.8:* )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- tc-check-openmp
- FORTRAN_NEED_OPENMP=1
- fi
-
- fortran-2_pkg_setup
-
- # avoid using existing R installation
- unset R_HOME
-}
-
-src_prepare() {
-# rm -r src/extra/tre || die
-
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
-
- # Fix for Darwin (macOS)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
- fi
- fi
-
- AT_M4DIR=m4 eautoreconf
-}
-
-src_configure() {
- filter-ldflags -Wl,-Bdirect -Bdirect
-
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --disable-R-static-lib \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- --with-system-tre \
- $(use_enable java) \
- $(use_enable lto lto R) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}"/fonts
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone shared AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- newenvd - 99R <<-_EOF_
- LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EPREFIX}/usr/$(get_libdir)/${PN}
- _EOF_
-
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd >/dev/null || die
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- local INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- local INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
-
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x "/usr/share/doc/${PF}/${f}"
- done
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-06-13 21:07 Jakov Smolić
0 siblings, 0 replies; 103+ messages in thread
From: Jakov Smolić @ 2022-06-13 21:07 UTC (permalink / raw
To: gentoo-commits
commit: f662aa0aa63947f3851f3f0e9a46cf4136f6f984
Author: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 13 21:07:07 2022 +0000
Commit: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
CommitDate: Mon Jun 13 21:07:07 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f662aa0a
dev-lang/R: Stabilize 4.2.0 arm64, #851024
Signed-off-by: Jakov Smolić <jsmolic <AT> gentoo.org>
dev-lang/R/R-4.2.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.0.ebuild b/dev-lang/R/R-4.2.0.ebuild
index fabfcdf26fc6..1ad97eea887e 100644
--- a/dev-lang/R/R-4.2.0.ebuild
+++ b/dev-lang/R/R-4.2.0.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-06-12 8:32 Agostino Sarubbo
0 siblings, 0 replies; 103+ messages in thread
From: Agostino Sarubbo @ 2022-06-12 8:32 UTC (permalink / raw
To: gentoo-commits
commit: 7591054eccfda00b331c654f28421ef9186d654b
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 12 08:31:52 2022 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Sun Jun 12 08:32:19 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7591054e
dev-lang/R: x86 stable wrt bug #851024
Package-Manager: Portage-3.0.30, Repoman-3.0.3
RepoMan-Options: --include-arches="x86"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
dev-lang/R/R-4.2.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.0.ebuild b/dev-lang/R/R-4.2.0.ebuild
index a7a1366d455f..fabfcdf26fc6 100644
--- a/dev-lang/R/R-4.2.0.ebuild
+++ b/dev-lang/R/R-4.2.0.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-06-12 8:28 Agostino Sarubbo
0 siblings, 0 replies; 103+ messages in thread
From: Agostino Sarubbo @ 2022-06-12 8:28 UTC (permalink / raw
To: gentoo-commits
commit: 4279db02dc8a74a308ea89891951a7f80d65223d
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 12 08:28:37 2022 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Sun Jun 12 08:28:37 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4279db02
dev-lang/R: amd64 stable wrt bug #851024
Package-Manager: Portage-3.0.30, Repoman-3.0.3
RepoMan-Options: --include-arches="amd64"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
dev-lang/R/R-4.2.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.0.ebuild b/dev-lang/R/R-4.2.0.ebuild
index 5607e2ee1643..a7a1366d455f 100644
--- a/dev-lang/R/R-4.2.0.ebuild
+++ b/dev-lang/R/R-4.2.0.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-06-10 21:38 Jakov Smolić
0 siblings, 0 replies; 103+ messages in thread
From: Jakov Smolić @ 2022-06-10 21:38 UTC (permalink / raw
To: gentoo-commits
commit: db11faa09adf5e8bc1ca7d18c72b25b22b5429b1
Author: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 10 21:38:04 2022 +0000
Commit: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
CommitDate: Fri Jun 10 21:38:25 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=db11faa0
dev-lang/R: Stabilize 4.2.0 sparc, #851024
Signed-off-by: Jakov Smolić <jsmolic <AT> gentoo.org>
dev-lang/R/R-4.2.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.2.0.ebuild b/dev-lang/R/R-4.2.0.ebuild
index 28e62a99b24d..5607e2ee1643 100644
--- a/dev-lang/R/R-4.2.0.ebuild
+++ b/dev-lang/R/R-4.2.0.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-06-01 15:10 Michael Orlitzky
0 siblings, 0 replies; 103+ messages in thread
From: Michael Orlitzky @ 2022-06-01 15:10 UTC (permalink / raw
To: gentoo-commits
commit: 092a26e7dbe69f39481dbbdd86fc978aa2d94e46
Author: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 1 15:07:05 2022 +0000
Commit: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
CommitDate: Wed Jun 1 15:07:05 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=092a26e7
dev-lang/R: remove old "unused" R-4.0.5-r1.ebuild.
Closes: https://bugs.gentoo.org/836053
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Michael Orlitzky <mjo <AT> gentoo.org>
dev-lang/R/Manifest | 1 -
dev-lang/R/R-4.0.5-r1.ebuild | 243 -------------------------------------------
2 files changed, 244 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index e39053606efc..e0f5649bf8e5 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,4 +1,3 @@
-DIST R-4.0.5.tar.gz 32466444 BLAKE2B 5dbbd289f4fd6347b4109eecaf65b50b5793a83edddd2cb391c20473607f136d91a8e9f4ab9e453f6927d2ca9145762920424e3a1dcea89309afde56efd5d32c SHA512 6ff5b0f9cb6b17f66cde1f5585d1b33659dbae8919d34c2e593f68a0bff4d0425aa9704d99284d103702a9cd42f613311f3a87af6b939b1af65dcec80bf2ca8c
DIST R-4.1.2.tar.gz 34009074 BLAKE2B 7ca14b28fc40548180dde979d57f93f41fb3966697d58f686cf63e24e4cbf2de8166240952e708fc94f97846cd57bbd559b4edb688500e1db2a6704de16f508c SHA512 657c7950a88f632f1bbb08dbd0b3fb485732a25d8bbcb8a7939a40b23c7a235fdb9b46c296acaa9f72eabebe96e270ecbdcd7970fc9d3a299e6687bea45f2d3f
DIST R-4.2.0.tar.gz 37585694 BLAKE2B 5ba4d3b9397e92b72af729d88ff562655e0dd7c547bd371638aa76d4f1701f4f8a7911d500cf4f10d87b62457f8f8ce7a946d893477ceb7268b06bd59bc10f3d SHA512 99e71dad00b63e44bfcb8dc9539ff1951809112882d9ee7e06a4e99bce2e6ceac24e8348fd598c21e6d5ab0e0629a85170cde208bfa8145af91c398ac4ef7bcd
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.0.5-r1.ebuild b/dev-lang/R/R-4.0.5-r1.ebuild
deleted file mode 100644
index ea1e78006a93..000000000000
--- a/dev-lang/R/R-4.0.5-r1.ebuild
+++ /dev/null
@@ -1,243 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
-
-# One test required profiling in v4.0.2, check the upstream bug:
-#
-# https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17836
-#
-REQUIRED_USE="png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )
- test? ( profile )
-"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-BDEPEND="virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-DEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- net-libs/libtirpc
- net-misc/curl
- virtual/blas:0
- || ( sys-apps/coreutils app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-RDEPEND="${DEPEND}
- sys-libs/zlib:0[minizip]
- java? ( >=virtual/jre-1.8:* )"
-
-RESTRICT="minimal? ( test )
- !test? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4
- eautoreconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
-
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x "/usr/share/doc/${PF}/${f}"
- done
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-06-01 5:25 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2022-06-01 5:25 UTC (permalink / raw
To: gentoo-commits
commit: 8f3fb8a524eb3297d76a630ef727a4667cfb3d8f
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 1 05:24:36 2022 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Wed Jun 1 05:24:36 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8f3fb8a5
dev-lang/R: Stabilize 4.1.2-r1 arm64, #843221
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.1.2-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.1.2-r1.ebuild b/dev-lang/R/R-4.1.2-r1.ebuild
index dfe847ee6a93..4a37a3f4aad8 100644
--- a/dev-lang/R/R-4.1.2-r1.ebuild
+++ b/dev-lang/R/R-4.1.2-r1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-05-11 12:49 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2022-05-11 12:49 UTC (permalink / raw
To: gentoo-commits
commit: 4c8f51cf8e8bc53d7868c208ccad31fd7584d6ed
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon May 9 08:25:06 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Wed May 11 12:49:37 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4c8f51cf
dev-lang/R: drop 4.1.0-r2, 4.1.2
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 1 -
dev-lang/R/R-4.1.0-r2.ebuild | 235 ----------------------------------------
dev-lang/R/R-4.1.2.ebuild | 248 -------------------------------------------
3 files changed, 484 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index d051562da6ab..e39053606efc 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,5 +1,4 @@
DIST R-4.0.5.tar.gz 32466444 BLAKE2B 5dbbd289f4fd6347b4109eecaf65b50b5793a83edddd2cb391c20473607f136d91a8e9f4ab9e453f6927d2ca9145762920424e3a1dcea89309afde56efd5d32c SHA512 6ff5b0f9cb6b17f66cde1f5585d1b33659dbae8919d34c2e593f68a0bff4d0425aa9704d99284d103702a9cd42f613311f3a87af6b939b1af65dcec80bf2ca8c
-DIST R-4.1.0.tar.gz 33714683 BLAKE2B 22ba966b5a29f153f3ce6cbc467e815c397e7c6aade0db62c7d2ae044056d9227da4dcb8fbf33e661548f4f434c328415e297c6b07b3932ef3f47358c2543f42 SHA512 41519bf06a1ebc2bb582e9a7c35d0e82e213312dec8147861a7f9b28ee750cd40dfbf02737602d05698641fcea6182b0da8131e83edacc358e98eca0a393b729
DIST R-4.1.2.tar.gz 34009074 BLAKE2B 7ca14b28fc40548180dde979d57f93f41fb3966697d58f686cf63e24e4cbf2de8166240952e708fc94f97846cd57bbd559b4edb688500e1db2a6704de16f508c SHA512 657c7950a88f632f1bbb08dbd0b3fb485732a25d8bbcb8a7939a40b23c7a235fdb9b46c296acaa9f72eabebe96e270ecbdcd7970fc9d3a299e6687bea45f2d3f
DIST R-4.2.0.tar.gz 37585694 BLAKE2B 5ba4d3b9397e92b72af729d88ff562655e0dd7c547bd371638aa76d4f1701f4f8a7911d500cf4f10d87b62457f8f8ce7a946d893477ceb7268b06bd59bc10f3d SHA512 99e71dad00b63e44bfcb8dc9539ff1951809112882d9ee7e06a4e99bce2e6ceac24e8348fd598c21e6d5ab0e0629a85170cde208bfa8145af91c398ac4ef7bcd
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.1.0-r2.ebuild b/dev-lang/R/R-4.1.0-r2.ebuild
deleted file mode 100644
index ebf4b5c27c2e..000000000000
--- a/dev-lang/R/R-4.1.0-r2.ebuild
+++ /dev/null
@@ -1,235 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="https://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
-
-REQUIRED_USE="png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )
-"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-BDEPEND="virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-DEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- net-libs/libtirpc
- net-misc/curl
- virtual/blas:0
- || ( sys-apps/coreutils app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-libs/libXt x11-misc/xdg-utils )"
-
-RDEPEND="${DEPEND}
- sys-libs/zlib:0[minizip]
- java? ( >=virtual/jre-1.8:* )"
-
-RESTRICT="minimal? ( test )
- !test? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4
- eautoreconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable lto lto R) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
-
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x "/usr/share/doc/${PF}/${f}"
- done
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-4.1.2.ebuild b/dev-lang/R/R-4.1.2.ebuild
deleted file mode 100644
index a29cab314d2a..000000000000
--- a/dev-lang/R/R-4.1.2.ebuild
+++ /dev/null
@@ -1,248 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="https://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
-
-REQUIRED_USE="
- png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )"
-RESTRICT="
- minimal? ( test )
- !test? ( test )"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-BDEPEND="
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-DEPEND="
- app-arch/bzip2
- app-arch/xz-utils
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- net-libs/libtirpc
- net-misc/curl
- virtual/blas
- sys-libs/zlib[minizip]
- || (
- sys-apps/coreutils
- app-misc/realpath
- )
- cairo? (
- x11-libs/cairo:=[X=]
- x11-libs/pango:=
- )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg )
- lapack? ( virtual/lapack )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:= )
- readline? ( sys-libs/readline:= )
- tiff? ( media-libs/tiff:= )
- tk? ( dev-lang/tk:= )
- X? (
- x11-libs/libXmu
- x11-libs/libXt
- x11-misc/xdg-utils
- )"
-RDEPEND="${DEPEND}
- java? ( >=virtual/jre-1.8:* )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- tc-check-openmp
- FORTRAN_NEED_OPENMP=1
- fi
-
- fortran-2_pkg_setup
-
- # avoid using existing R installation
- unset R_HOME
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
-
- # Fix for Darwin (macOS)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
- fi
- fi
-
- AT_M4DIR=m4 eautoreconf
-}
-
-src_configure() {
- filter-ldflags -Wl,-Bdirect -Bdirect
-
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --disable-R-static-lib \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable lto lto R) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}"/fonts
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone shared AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- newenvd - 99R <<-_EOF_
- LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EPREFIX}/usr/$(get_libdir)/${PN}
- _EOF_
-
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd >/dev/null || die
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- local INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- local INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
-
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x "/usr/share/doc/${PF}/${f}"
- done
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-05-10 20:06 Arthur Zamarin
0 siblings, 0 replies; 103+ messages in thread
From: Arthur Zamarin @ 2022-05-10 20:06 UTC (permalink / raw
To: gentoo-commits
commit: 1b26672f26eea6d5875b399f4b62f3e59238ea7f
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Tue May 10 20:05:54 2022 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Tue May 10 20:05:54 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1b26672f
dev-lang/R: Stabilize 4.1.2-r1 sparc, #843221
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
dev-lang/R/R-4.1.2-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.1.2-r1.ebuild b/dev-lang/R/R-4.1.2-r1.ebuild
index 1ff88e90cc01..dfe847ee6a93 100644
--- a/dev-lang/R/R-4.1.2-r1.ebuild
+++ b/dev-lang/R/R-4.1.2-r1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~sparc x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-05-08 9:33 Jakov Smolić
0 siblings, 0 replies; 103+ messages in thread
From: Jakov Smolić @ 2022-05-08 9:33 UTC (permalink / raw
To: gentoo-commits
commit: 761de200a6f03da35ca671796c3bb05e404e3552
Author: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
AuthorDate: Sun May 8 09:33:05 2022 +0000
Commit: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
CommitDate: Sun May 8 09:33:05 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=761de200
dev-lang/R: Stabilize 4.1.2-r1 x86, #843221
Signed-off-by: Jakov Smolić <jsmolic <AT> gentoo.org>
dev-lang/R/R-4.1.2-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.1.2-r1.ebuild b/dev-lang/R/R-4.1.2-r1.ebuild
index e00e6055a80b..1ff88e90cc01 100644
--- a/dev-lang/R/R-4.1.2-r1.ebuild
+++ b/dev-lang/R/R-4.1.2-r1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-05-08 9:15 Jakov Smolić
0 siblings, 0 replies; 103+ messages in thread
From: Jakov Smolić @ 2022-05-08 9:15 UTC (permalink / raw
To: gentoo-commits
commit: 46eb15fcdd119acc1c8b5826ea48407f0c444b52
Author: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
AuthorDate: Sun May 8 09:15:25 2022 +0000
Commit: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
CommitDate: Sun May 8 09:15:25 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=46eb15fc
dev-lang/R: Stabilize 4.1.2-r1 amd64, #843221
Signed-off-by: Jakov Smolić <jsmolic <AT> gentoo.org>
dev-lang/R/R-4.1.2-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.1.2-r1.ebuild b/dev-lang/R/R-4.1.2-r1.ebuild
index a4c36d76f9e3..e00e6055a80b 100644
--- a/dev-lang/R/R-4.1.2-r1.ebuild
+++ b/dev-lang/R/R-4.1.2-r1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-05-07 22:31 Michael Orlitzky
0 siblings, 0 replies; 103+ messages in thread
From: Michael Orlitzky @ 2022-05-07 22:31 UTC (permalink / raw
To: gentoo-commits
commit: ddf00116a89246a9d213a8d35a7b8bb7bc311938
Author: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
AuthorDate: Sat May 7 22:29:07 2022 +0000
Commit: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
CommitDate: Sat May 7 22:29:25 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ddf00116
dev-lang/R: new upstream version R-4.2.0.
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Michael Orlitzky <mjo <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.2.0.ebuild | 256 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 257 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index ff6f613c6b32..d051562da6ab 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,4 +1,5 @@
DIST R-4.0.5.tar.gz 32466444 BLAKE2B 5dbbd289f4fd6347b4109eecaf65b50b5793a83edddd2cb391c20473607f136d91a8e9f4ab9e453f6927d2ca9145762920424e3a1dcea89309afde56efd5d32c SHA512 6ff5b0f9cb6b17f66cde1f5585d1b33659dbae8919d34c2e593f68a0bff4d0425aa9704d99284d103702a9cd42f613311f3a87af6b939b1af65dcec80bf2ca8c
DIST R-4.1.0.tar.gz 33714683 BLAKE2B 22ba966b5a29f153f3ce6cbc467e815c397e7c6aade0db62c7d2ae044056d9227da4dcb8fbf33e661548f4f434c328415e297c6b07b3932ef3f47358c2543f42 SHA512 41519bf06a1ebc2bb582e9a7c35d0e82e213312dec8147861a7f9b28ee750cd40dfbf02737602d05698641fcea6182b0da8131e83edacc358e98eca0a393b729
DIST R-4.1.2.tar.gz 34009074 BLAKE2B 7ca14b28fc40548180dde979d57f93f41fb3966697d58f686cf63e24e4cbf2de8166240952e708fc94f97846cd57bbd559b4edb688500e1db2a6704de16f508c SHA512 657c7950a88f632f1bbb08dbd0b3fb485732a25d8bbcb8a7939a40b23c7a235fdb9b46c296acaa9f72eabebe96e270ecbdcd7970fc9d3a299e6687bea45f2d3f
+DIST R-4.2.0.tar.gz 37585694 BLAKE2B 5ba4d3b9397e92b72af729d88ff562655e0dd7c547bd371638aa76d4f1701f4f8a7911d500cf4f10d87b62457f8f8ce7a946d893477ceb7268b06bd59bc10f3d SHA512 99e71dad00b63e44bfcb8dc9539ff1951809112882d9ee7e06a4e99bce2e6ceac24e8348fd598c21e6d5ab0e0629a85170cde208bfa8145af91c398ac4ef7bcd
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.2.0.ebuild b/dev-lang/R/R-4.2.0.ebuild
new file mode 100644
index 000000000000..28e62a99b24d
--- /dev/null
+++ b/dev-lang/R/R-4.2.0.ebuild
@@ -0,0 +1,256 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="https://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
+
+REQUIRED_USE="
+ png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )"
+RESTRICT="
+ minimal? ( test )
+ !test? ( test )"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+BDEPEND="
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+DEPEND="
+ app-arch/bzip2
+ app-arch/xz-utils
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ >=dev-libs/tre-0.8.0_p20210321[approx]
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas
+ sys-libs/zlib[minizip]
+ || (
+ sys-apps/coreutils
+ app-misc/realpath
+ )
+ cairo? (
+ x11-libs/cairo:=[X=]
+ x11-libs/pango:=
+ )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg )
+ lapack? ( virtual/lapack )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:= )
+ readline? ( sys-libs/readline:= )
+ tiff? ( media-libs/tiff:= )
+ tk? ( dev-lang/tk:= )
+ X? (
+ x11-libs/libXmu
+ x11-libs/libXt
+ x11-misc/xdg-utils
+ )"
+RDEPEND="${DEPEND}
+ java? ( >=virtual/jre-1.8:* )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ tc-check-openmp
+ FORTRAN_NEED_OPENMP=1
+ fi
+
+ fortran-2_pkg_setup
+
+ # avoid using existing R installation
+ unset R_HOME
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ # Disable this test until it passes again,
+ # https://bugs.r-project.org/show_bug.cgi?id=18338
+ sed -e 's/ reg-packages.R / /' \
+ -i tests/Makefile.common || die
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+
+ # Fix for Darwin (macOS)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+
+ AT_M4DIR=m4 eautoreconf
+}
+
+src_configure() {
+ filter-ldflags -Wl,-Bdirect -Bdirect
+
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --disable-R-static-lib \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ --with-system-tre \
+ $(use_enable java) \
+ $(use_enable lto lto R) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}"/fonts
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone shared AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ newenvd - 99R <<-_EOF_
+ LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EPREFIX}/usr/$(get_libdir)/${PN}
+ _EOF_
+
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd >/dev/null || die
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ local INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ local INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x "/usr/share/doc/${PF}/${f}"
+ done
+
+ # Finally, an extra copy of this started showing up at some point...
+ rm "${ED}/usr/$(get_libdir)/R/COPYING" || die
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-03-21 22:07 Patrice Clement
0 siblings, 0 replies; 103+ messages in thread
From: Patrice Clement @ 2022-03-21 22:07 UTC (permalink / raw
To: gentoo-commits
commit: e4cbd799f751c26731435be0b0b0584d6a076490
Author: Alessandro Barbieri <lssndrbarbieri <AT> gmail <DOT> com>
AuthorDate: Wed Mar 16 05:21:19 2022 +0000
Commit: Patrice Clement <monsieurp <AT> gentoo <DOT> org>
CommitDate: Mon Mar 21 22:06:11 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e4cbd799
dev-lang/R: enable system tre
Closes: https://bugs.gentoo.org/802099
Signed-off-by: Alessandro Barbieri <lssndrbarbieri <AT> gmail.com>
Signed-off-by: Patrice Clement <monsieurp <AT> gentoo.org>
dev-lang/R/R-4.1.2-r1.ebuild | 250 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 250 insertions(+)
diff --git a/dev-lang/R/R-4.1.2-r1.ebuild b/dev-lang/R/R-4.1.2-r1.ebuild
new file mode 100644
index 000000000000..a4c36d76f9e3
--- /dev/null
+++ b/dev-lang/R/R-4.1.2-r1.ebuild
@@ -0,0 +1,250 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="https://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
+
+REQUIRED_USE="
+ png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )"
+RESTRICT="
+ minimal? ( test )
+ !test? ( test )"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+BDEPEND="
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+DEPEND="
+ app-arch/bzip2
+ app-arch/xz-utils
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ >=dev-libs/tre-0.8.0_p20210321[approx]
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas
+ sys-libs/zlib[minizip]
+ || (
+ sys-apps/coreutils
+ app-misc/realpath
+ )
+ cairo? (
+ x11-libs/cairo:=[X=]
+ x11-libs/pango:=
+ )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg )
+ lapack? ( virtual/lapack )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:= )
+ readline? ( sys-libs/readline:= )
+ tiff? ( media-libs/tiff:= )
+ tk? ( dev-lang/tk:= )
+ X? (
+ x11-libs/libXmu
+ x11-libs/libXt
+ x11-misc/xdg-utils
+ )"
+RDEPEND="${DEPEND}
+ java? ( >=virtual/jre-1.8:* )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ tc-check-openmp
+ FORTRAN_NEED_OPENMP=1
+ fi
+
+ fortran-2_pkg_setup
+
+ # avoid using existing R installation
+ unset R_HOME
+}
+
+src_prepare() {
+# rm -r src/extra/tre || die
+
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+
+ # Fix for Darwin (macOS)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+
+ AT_M4DIR=m4 eautoreconf
+}
+
+src_configure() {
+ filter-ldflags -Wl,-Bdirect -Bdirect
+
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --disable-R-static-lib \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ --with-system-tre \
+ $(use_enable java) \
+ $(use_enable lto lto R) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}"/fonts
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone shared AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ newenvd - 99R <<-_EOF_
+ LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EPREFIX}/usr/$(get_libdir)/${PN}
+ _EOF_
+
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd >/dev/null || die
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ local INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ local INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x "/usr/share/doc/${PF}/${f}"
+ done
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2022-01-26 10:10 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2022-01-26 10:10 UTC (permalink / raw
To: gentoo-commits
commit: cf159ddadd10b74e894c7e06715a9c9be197879e
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Wed Jan 26 10:10:27 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Wed Jan 26 10:10:27 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cf159dda
dev-lang/R: add 4.1.2
Closes: https://bugs.gentoo.org/808711
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.1.2.ebuild | 248 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 249 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 756a8d080efa..ff6f613c6b32 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,4 @@
DIST R-4.0.5.tar.gz 32466444 BLAKE2B 5dbbd289f4fd6347b4109eecaf65b50b5793a83edddd2cb391c20473607f136d91a8e9f4ab9e453f6927d2ca9145762920424e3a1dcea89309afde56efd5d32c SHA512 6ff5b0f9cb6b17f66cde1f5585d1b33659dbae8919d34c2e593f68a0bff4d0425aa9704d99284d103702a9cd42f613311f3a87af6b939b1af65dcec80bf2ca8c
DIST R-4.1.0.tar.gz 33714683 BLAKE2B 22ba966b5a29f153f3ce6cbc467e815c397e7c6aade0db62c7d2ae044056d9227da4dcb8fbf33e661548f4f434c328415e297c6b07b3932ef3f47358c2543f42 SHA512 41519bf06a1ebc2bb582e9a7c35d0e82e213312dec8147861a7f9b28ee750cd40dfbf02737602d05698641fcea6182b0da8131e83edacc358e98eca0a393b729
+DIST R-4.1.2.tar.gz 34009074 BLAKE2B 7ca14b28fc40548180dde979d57f93f41fb3966697d58f686cf63e24e4cbf2de8166240952e708fc94f97846cd57bbd559b4edb688500e1db2a6704de16f508c SHA512 657c7950a88f632f1bbb08dbd0b3fb485732a25d8bbcb8a7939a40b23c7a235fdb9b46c296acaa9f72eabebe96e270ecbdcd7970fc9d3a299e6687bea45f2d3f
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.1.2.ebuild b/dev-lang/R/R-4.1.2.ebuild
new file mode 100644
index 000000000000..a29cab314d2a
--- /dev/null
+++ b/dev-lang/R/R-4.1.2.ebuild
@@ -0,0 +1,248 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="https://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
+
+REQUIRED_USE="
+ png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )"
+RESTRICT="
+ minimal? ( test )
+ !test? ( test )"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+BDEPEND="
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+DEPEND="
+ app-arch/bzip2
+ app-arch/xz-utils
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas
+ sys-libs/zlib[minizip]
+ || (
+ sys-apps/coreutils
+ app-misc/realpath
+ )
+ cairo? (
+ x11-libs/cairo:=[X=]
+ x11-libs/pango:=
+ )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg )
+ lapack? ( virtual/lapack )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:= )
+ readline? ( sys-libs/readline:= )
+ tiff? ( media-libs/tiff:= )
+ tk? ( dev-lang/tk:= )
+ X? (
+ x11-libs/libXmu
+ x11-libs/libXt
+ x11-misc/xdg-utils
+ )"
+RDEPEND="${DEPEND}
+ java? ( >=virtual/jre-1.8:* )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ tc-check-openmp
+ FORTRAN_NEED_OPENMP=1
+ fi
+
+ fortran-2_pkg_setup
+
+ # avoid using existing R installation
+ unset R_HOME
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+
+ # Fix for Darwin (macOS)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+
+ AT_M4DIR=m4 eautoreconf
+}
+
+src_configure() {
+ filter-ldflags -Wl,-Bdirect -Bdirect
+
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --disable-R-static-lib \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable lto lto R) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}"/fonts
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone shared AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ newenvd - 99R <<-_EOF_
+ LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EPREFIX}/usr/$(get_libdir)/${PN}
+ _EOF_
+
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd >/dev/null || die
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ local INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ local INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x "/usr/share/doc/${PF}/${f}"
+ done
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-10-23 14:24 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2021-10-23 14:24 UTC (permalink / raw
To: gentoo-commits
commit: 468924259258c048b50e5cf6f258d7985a78275e
Author: Volkmar W. Pogatzki <gentoo <AT> pogatzki <DOT> net>
AuthorDate: Sat Oct 23 14:24:41 2021 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Oct 23 14:24:41 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=46892425
dev-lang/R: remove 4.0.4
Closes: https://github.com/gentoo/gentoo/pull/22680
Closes: https://bugs.gentoo.org/801145
Package-Manager: Portage-3.0.20, Repoman-3.0.3
Signed-off-by: Volkmar W. Pogatzki <gentoo <AT> pogatzki.net>
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 1 -
dev-lang/R/R-4.0.4.ebuild | 243 ----------------------------------------------
2 files changed, 244 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index e217fbc0125..756a8d080ef 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,4 +1,3 @@
-DIST R-4.0.4.tar.gz 33687611 BLAKE2B 40cdfd98fe6c9193deb729d151631c2b0f935accf5ea6251704b633d2688278af1a5a67317152be023fb4a10315c64e473f58276bb0c3fadb1141c35391ad22e SHA512 811c4407a083eb776f92c3cbacb1dc7eada8890a8c27678c6c82bef9db52b1afaefeb408fbe11e46922740adee498f32e7ddf7451b3ab89cf60773737e47f8be
DIST R-4.0.5.tar.gz 32466444 BLAKE2B 5dbbd289f4fd6347b4109eecaf65b50b5793a83edddd2cb391c20473607f136d91a8e9f4ab9e453f6927d2ca9145762920424e3a1dcea89309afde56efd5d32c SHA512 6ff5b0f9cb6b17f66cde1f5585d1b33659dbae8919d34c2e593f68a0bff4d0425aa9704d99284d103702a9cd42f613311f3a87af6b939b1af65dcec80bf2ca8c
DIST R-4.1.0.tar.gz 33714683 BLAKE2B 22ba966b5a29f153f3ce6cbc467e815c397e7c6aade0db62c7d2ae044056d9227da4dcb8fbf33e661548f4f434c328415e297c6b07b3932ef3f47358c2543f42 SHA512 41519bf06a1ebc2bb582e9a7c35d0e82e213312dec8147861a7f9b28ee750cd40dfbf02737602d05698641fcea6182b0da8131e83edacc358e98eca0a393b729
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.0.4.ebuild b/dev-lang/R/R-4.0.4.ebuild
deleted file mode 100644
index e85bf329f62..00000000000
--- a/dev-lang/R/R-4.0.4.ebuild
+++ /dev/null
@@ -1,243 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
-
-# One test required profiling in v4.0.2, check the upstream bug:
-#
-# https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17836
-#
-REQUIRED_USE="png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )
- test? ( profile )
-"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-BDEPEND="virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-DEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- net-libs/libtirpc
- net-misc/curl
- virtual/blas:0
- || ( sys-apps/coreutils app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-RDEPEND="${DEPEND}
- sys-libs/zlib:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )
- !test? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4
- eautoreconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
-
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x "/usr/share/doc/${PF}/${f}"
- done
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-08-06 13:34 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2021-08-06 13:34 UTC (permalink / raw
To: gentoo-commits
commit: 166f934bceaabbce7818db0a12a61f2ab500d8cd
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Fri Aug 6 13:33:53 2021 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Fri Aug 6 13:33:53 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=166f934b
dev-lang/R: Stabilize 4.0.5-r1 arm64, #801145
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.0.5-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.0.5-r1.ebuild b/dev-lang/R/R-4.0.5-r1.ebuild
index e8bfafd7f0a..ea1e78006a9 100644
--- a/dev-lang/R/R-4.0.5-r1.ebuild
+++ b/dev-lang/R/R-4.0.5-r1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
# One test required profiling in v4.0.2, check the upstream bug:
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-07-18 2:48 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2021-07-18 2:48 UTC (permalink / raw
To: gentoo-commits
commit: c4803567eced7665d91c9862e725524bf358f75b
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sun Jul 18 02:47:42 2021 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sun Jul 18 02:48:29 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c4803567
dev-lang/R: revbump for fixed econf arguments
We need to revbump for cases like this to ensure that
the user's preferences/USE flags were fully respected
(and done so correctly).
Fixes: b5ca7094608362020c06f80bb01ee6b872c029c0
Bug: https://bugs.gentoo.org/801928
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/{R-4.1.0-r1.ebuild => R-4.1.0-r2.ebuild} | 0
1 file changed, 0 insertions(+), 0 deletions(-)
diff --git a/dev-lang/R/R-4.1.0-r1.ebuild b/dev-lang/R/R-4.1.0-r2.ebuild
similarity index 100%
rename from dev-lang/R/R-4.1.0-r1.ebuild
rename to dev-lang/R/R-4.1.0-r2.ebuild
^ permalink raw reply [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-07-16 11:52 Benda XU
0 siblings, 0 replies; 103+ messages in thread
From: Benda XU @ 2021-07-16 11:52 UTC (permalink / raw
To: gentoo-commits
commit: b5ca7094608362020c06f80bb01ee6b872c029c0
Author: Benda Xu <heroxbd <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 16 11:51:51 2021 +0000
Commit: Benda XU <heroxbd <AT> gentoo <DOT> org>
CommitDate: Fri Jul 16 11:52:39 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b5ca7094
dev-lang/R: fix econf arguments.
mjo has forgotten to append '\' to include the arguments after lto.
Reference: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6b3b5b20fe9c71906a674908c8dd08d38706804b
Closes: https://bugs.gentoo.org/801928
Closes: https://github.com/gentoo/gentoo/pull/21626
Package-Manager: Portage-3.0.20, Repoman-3.0.3
Signed-off-by: Benda Xu <heroxbd <AT> gentoo.org>
dev-lang/R/R-4.1.0-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.1.0-r1.ebuild b/dev-lang/R/R-4.1.0-r1.ebuild
index 3972132499a..ebf4b5c27c2 100644
--- a/dev-lang/R/R-4.1.0-r1.ebuild
+++ b/dev-lang/R/R-4.1.0-r1.ebuild
@@ -136,7 +136,7 @@ src_configure() {
--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
$(use_enable java) \
- $(use_enable lto lto R)
+ $(use_enable lto lto R) \
$(use_enable nls) \
$(use_enable openmp) \
$(use_enable profile R-profiling) \
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-07-12 17:37 Michael Orlitzky
0 siblings, 0 replies; 103+ messages in thread
From: Michael Orlitzky @ 2021-07-12 17:37 UTC (permalink / raw
To: gentoo-commits
commit: bc088c4a8f4ea53563ad509ae11b843ffabc5d3e
Author: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
AuthorDate: Mon Jul 12 17:35:28 2021 +0000
Commit: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
CommitDate: Mon Jul 12 17:35:43 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bc088c4a
dev-lang/R: add missing x11-libs/libXt dependency.
Closes: https://bugs.gentoo.org/801910
Package-Manager: Portage-3.0.20, Repoman-3.0.2
Signed-off-by: Michael Orlitzky <mjo <AT> gentoo.org>
dev-lang/R/{R-4.1.0.ebuild => R-4.1.0-r1.ebuild} | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.1.0.ebuild b/dev-lang/R/R-4.1.0-r1.ebuild
similarity index 99%
rename from dev-lang/R/R-4.1.0.ebuild
rename to dev-lang/R/R-4.1.0-r1.ebuild
index 775e4cb5b02..3972132499a 100644
--- a/dev-lang/R/R-4.1.0.ebuild
+++ b/dev-lang/R/R-4.1.0-r1.ebuild
@@ -50,7 +50,7 @@ DEPEND="
readline? ( sys-libs/readline:0= )
tiff? ( media-libs/tiff:0= )
tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+ X? ( x11-libs/libXmu:0= x11-libs/libXt x11-misc/xdg-utils )"
RDEPEND="${DEPEND}
sys-libs/zlib:0[minizip]
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-07-12 14:11 Michael Orlitzky
0 siblings, 0 replies; 103+ messages in thread
From: Michael Orlitzky @ 2021-07-12 14:11 UTC (permalink / raw
To: gentoo-commits
commit: 6b3b5b20fe9c71906a674908c8dd08d38706804b
Author: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
AuthorDate: Mon Jul 12 14:07:28 2021 +0000
Commit: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
CommitDate: Mon Jul 12 14:11:40 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6b3b5b20
dev-lang/R: new version 4.1.0.
New upstream version with a few other ebuild improvements:
* Use https in HOMEPAGE.
* Remove workaround for upstream bug 17836.
* Add support (USE=lto) for link-time optimization.
* Remove an old gcc-4.x workaround.
Closes: https://bugs.gentoo.org/792426
Package-Manager: Portage-3.0.20, Repoman-3.0.2
Signed-off-by: Michael Orlitzky <mjo <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.1.0.ebuild | 235 ++++++++++++++++++++++++++++++++++++++++++++++
dev-lang/R/metadata.xml | 5 +
3 files changed, 241 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 72da37844ea..e217fbc0125 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,4 @@
DIST R-4.0.4.tar.gz 33687611 BLAKE2B 40cdfd98fe6c9193deb729d151631c2b0f935accf5ea6251704b633d2688278af1a5a67317152be023fb4a10315c64e473f58276bb0c3fadb1141c35391ad22e SHA512 811c4407a083eb776f92c3cbacb1dc7eada8890a8c27678c6c82bef9db52b1afaefeb408fbe11e46922740adee498f32e7ddf7451b3ab89cf60773737e47f8be
DIST R-4.0.5.tar.gz 32466444 BLAKE2B 5dbbd289f4fd6347b4109eecaf65b50b5793a83edddd2cb391c20473607f136d91a8e9f4ab9e453f6927d2ca9145762920424e3a1dcea89309afde56efd5d32c SHA512 6ff5b0f9cb6b17f66cde1f5585d1b33659dbae8919d34c2e593f68a0bff4d0425aa9704d99284d103702a9cd42f613311f3a87af6b939b1af65dcec80bf2ca8c
+DIST R-4.1.0.tar.gz 33714683 BLAKE2B 22ba966b5a29f153f3ce6cbc467e815c397e7c6aade0db62c7d2ae044056d9227da4dcb8fbf33e661548f4f434c328415e297c6b07b3932ef3f47358c2543f42 SHA512 41519bf06a1ebc2bb582e9a7c35d0e82e213312dec8147861a7f9b28ee750cd40dfbf02737602d05698641fcea6182b0da8131e83edacc358e98eca0a393b729
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.1.0.ebuild b/dev-lang/R/R-4.1.0.ebuild
new file mode 100644
index 00000000000..775e4cb5b02
--- /dev/null
+++ b/dev-lang/R/R-4.1.0.ebuild
@@ -0,0 +1,235 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="https://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
+
+REQUIRED_USE="png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )
+"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+BDEPEND="virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+DEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas:0
+ || ( sys-apps/coreutils app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+RDEPEND="${DEPEND}
+ sys-libs/zlib:0[minizip]
+ java? ( >=virtual/jre-1.8:* )"
+
+RESTRICT="minimal? ( test )
+ !test? ( test )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4
+ eautoreconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable lto lto R)
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
+ EOF
+ doenvd 99R
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x "/usr/share/doc/${PF}/${f}"
+ done
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
diff --git a/dev-lang/R/metadata.xml b/dev-lang/R/metadata.xml
index 8972d9ed88c..e9bebc0e016 100644
--- a/dev-lang/R/metadata.xml
+++ b/dev-lang/R/metadata.xml
@@ -5,6 +5,11 @@
<email>sci-mathematics@gentoo.org</email>
<name>Gentoo Mathematics Project</name>
</maintainer>
+ <use>
+ <flag name="lto">
+ Use link-time optimization for R and its recommended packages.
+ </flag>
+ </use>
<longdescription lang="en">
R is GNU S, a system for statistical computation and graphics. It
consists of a language plus a run-time environment with graphics, a
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-07-10 17:28 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2021-07-10 17:28 UTC (permalink / raw
To: gentoo-commits
commit: 5a39d7c1625ef8cde30d25c07ee5836525355455
Author: Rolf Eike Beer <eike <AT> sf-mail <DOT> de>
AuthorDate: Sat Jul 10 15:46:44 2021 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sat Jul 10 17:28:21 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5a39d7c1
dev-lang/R: stable 4.0.5-r1 for sparc, bug #801145
Package-Manager: Portage-3.0.20, Repoman-3.0.2
RepoMan-Options: --include-arches="sparc"
Signed-off-by: Rolf Eike Beer <eike <AT> sf-mail.de>
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.0.5-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.0.5-r1.ebuild b/dev-lang/R/R-4.0.5-r1.ebuild
index 7cd415f99ed..330656c3f48 100644
--- a/dev-lang/R/R-4.0.5-r1.ebuild
+++ b/dev-lang/R/R-4.0.5-r1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
# One test required profiling in v4.0.2, check the upstream bug:
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-06-06 18:00 Pacho Ramos
0 siblings, 0 replies; 103+ messages in thread
From: Pacho Ramos @ 2021-06-06 18:00 UTC (permalink / raw
To: gentoo-commits
commit: 12c4bca2b9941e25b668978a29aeb9633591a625
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 6 17:41:53 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Jun 6 18:00:24 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=12c4bca2
dev-lang/R: Supports newer java
Closes: https://bugs.gentoo.org/787350
Package-Manager: Portage-3.0.19, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
dev-lang/R/{R-4.0.5.ebuild => R-4.0.5-r1.ebuild} | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.0.5.ebuild b/dev-lang/R/R-4.0.5-r1.ebuild
similarity index 99%
rename from dev-lang/R/R-4.0.5.ebuild
rename to dev-lang/R/R-4.0.5-r1.ebuild
index 560e83d01f7..0250344292a 100644
--- a/dev-lang/R/R-4.0.5.ebuild
+++ b/dev-lang/R/R-4.0.5-r1.ebuild
@@ -59,7 +59,7 @@ DEPEND="
RDEPEND="${DEPEND}
sys-libs/zlib:0[minizip]
- java? ( >=virtual/jre-1.5 )"
+ java? ( >=virtual/jre-1.8:* )"
RESTRICT="minimal? ( test )
!test? ( test )"
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-04-20 11:06 David Seifert
0 siblings, 0 replies; 103+ messages in thread
From: David Seifert @ 2021-04-20 11:06 UTC (permalink / raw
To: gentoo-commits
commit: 92d5e5c89778eb7ce15420c71a3f7abd0bdf6b7e
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 20 11:06:05 2021 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Tue Apr 20 11:06:05 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=92d5e5c8
dev-lang/R: Remove old 3.4.1, 3.6.3-r1, 4.0.2
Bug: https://bugs.gentoo.org/765361
Closes: https://bugs.gentoo.org/776781
Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: David Seifert <soap <AT> gentoo.org>
dev-lang/R/Manifest | 3 -
dev-lang/R/R-3.4.1.ebuild | 203 ------------------------------------
dev-lang/R/R-3.6.3-r1.ebuild | 234 -----------------------------------------
dev-lang/R/R-4.0.2.ebuild | 243 -------------------------------------------
4 files changed, 683 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 5a48a7b4c96..72da37844ea 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,6 +1,3 @@
-DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
-DIST R-3.6.3.tar.gz 33308185 BLAKE2B f82751e21d3b502132f8f27d4fc47a921fb085a50c3da3b45e08fbbdd1ab3d42e89b4fa6653a570c21176d79f492277b1d0b86c3c9f4da1386d8b6e4771d4d2c SHA512 9b1dc78922e431bd1af81e6e560b10ad04d121718f680fed32db735d561fd40ea6028759976722db11559f1a78fe684119b766f0567128cb2ee5003aa87a0931
-DIST R-4.0.2.tar.gz 33191186 BLAKE2B 2d5b99c17a9df48a36871f18701efacfaa1e6bb89c0e5c6516fc20966547f34f9079dc52ab18ac7816e0fed25d6230076246e83dc648501553fa2d0cad67b8e4 SHA512 b7330613ee9795f54cde3dd9f7509be83d9156fb8577c17179727ee01450db27704249f68bd48e0331e2df09c2d9833d8bb019c4f9ce9ba669df74650ff2e842
DIST R-4.0.4.tar.gz 33687611 BLAKE2B 40cdfd98fe6c9193deb729d151631c2b0f935accf5ea6251704b633d2688278af1a5a67317152be023fb4a10315c64e473f58276bb0c3fadb1141c35391ad22e SHA512 811c4407a083eb776f92c3cbacb1dc7eada8890a8c27678c6c82bef9db52b1afaefeb408fbe11e46922740adee498f32e7ddf7451b3ab89cf60773737e47f8be
DIST R-4.0.5.tar.gz 32466444 BLAKE2B 5dbbd289f4fd6347b4109eecaf65b50b5793a83edddd2cb391c20473607f136d91a8e9f4ab9e453f6927d2ca9145762920424e3a1dcea89309afde56efd5d32c SHA512 6ff5b0f9cb6b17f66cde1f5585d1b33659dbae8919d34c2e593f68a0bff4d0425aa9704d99284d103702a9cd42f613311f3a87af6b939b1af65dcec80bf2ca8c
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-3.4.1.ebuild b/dev-lang/R/R-3.4.1.ebuild
deleted file mode 100644
index 51f38dcc9d6..00000000000
--- a/dev-lang/R/R-3.4.1.ebuild
+++ /dev/null
@@ -1,203 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- net-misc/curl
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- if ! tc-check-openmp; then
- ewarn "OpenMP is not available in your current selected compiler"
- die "need openmp capable compiler"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4 eaclocal
- eautoconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-3.6.3-r1.ebuild b/dev-lang/R/R-3.6.3-r1.ebuild
deleted file mode 100644
index ac47502bca4..00000000000
--- a/dev-lang/R/R-3.6.3-r1.ebuild
+++ /dev/null
@@ -1,234 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 multilib toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-BDEPEND="virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-DEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- dev-libs/libpcre:3=
- net-libs/libtirpc
- net-misc/curl
- virtual/blas:0
- || ( sys-apps/coreutils app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-RDEPEND="${DEPEND}
- sys-libs/zlib:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )
- !test? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4
- eautoreconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
-
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x "/usr/share/doc/${PF}/${f}"
- done
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-4.0.2.ebuild b/dev-lang/R/R-4.0.2.ebuild
deleted file mode 100644
index 15faae53360..00000000000
--- a/dev-lang/R/R-4.0.2.ebuild
+++ /dev/null
@@ -1,243 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 multilib toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
-
-# One test required profiling in v4.0.2, check the upstream bug:
-#
-# https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17836
-#
-REQUIRED_USE="png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )
- test? ( profile )
-"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-BDEPEND="virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-DEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- net-libs/libtirpc
- net-misc/curl
- virtual/blas:0
- || ( sys-apps/coreutils app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-RDEPEND="${DEPEND}
- sys-libs/zlib:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )
- !test? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4
- eautoreconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
-
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x "/usr/share/doc/${PF}/${f}"
- done
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-04-11 18:41 Sergei Trofimovich
0 siblings, 0 replies; 103+ messages in thread
From: Sergei Trofimovich @ 2021-04-11 18:41 UTC (permalink / raw
To: gentoo-commits
commit: a39bc917b6868a3ac54f76c881bb6abc74a50744
Author: Rolf Eike Beer <eike <AT> sf-mail <DOT> de>
AuthorDate: Sun Apr 11 16:34:27 2021 +0000
Commit: Sergei Trofimovich <slyfox <AT> gentoo <DOT> org>
CommitDate: Sun Apr 11 18:41:12 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a39bc917
dev-lang/R: stable 4.0.4 for sparc, bug #765361
Package-Manager: Portage-3.0.17, Repoman-3.0.2
RepoMan-Options: --include-arches="sparc"
Signed-off-by: Rolf Eike Beer <eike <AT> sf-mail.de>
Signed-off-by: Sergei Trofimovich <slyfox <AT> gentoo.org>
dev-lang/R/R-4.0.4.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.0.4.ebuild b/dev-lang/R/R-4.0.4.ebuild
index df95c6aa5ae..e85bf329f62 100644
--- a/dev-lang/R/R-4.0.4.ebuild
+++ b/dev-lang/R/R-4.0.4.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 ~sparc x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
# One test required profiling in v4.0.2, check the upstream bug:
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-04-10 13:33 Mikle Kolyada
0 siblings, 0 replies; 103+ messages in thread
From: Mikle Kolyada @ 2021-04-10 13:33 UTC (permalink / raw
To: gentoo-commits
commit: 39ea7b8baaf4a59680f07475e64fbce2b6a36e05
Author: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
AuthorDate: Sat Apr 10 13:32:39 2021 +0000
Commit: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
CommitDate: Sat Apr 10 13:33:07 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=39ea7b8b
dev-lang/R: Version bump (v4.0.5)
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Mikle Kolyada <zlogene <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.0.5.ebuild | 243 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 244 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index fa930a03bf5..5a48a7b4c96 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -2,4 +2,5 @@ DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4
DIST R-3.6.3.tar.gz 33308185 BLAKE2B f82751e21d3b502132f8f27d4fc47a921fb085a50c3da3b45e08fbbdd1ab3d42e89b4fa6653a570c21176d79f492277b1d0b86c3c9f4da1386d8b6e4771d4d2c SHA512 9b1dc78922e431bd1af81e6e560b10ad04d121718f680fed32db735d561fd40ea6028759976722db11559f1a78fe684119b766f0567128cb2ee5003aa87a0931
DIST R-4.0.2.tar.gz 33191186 BLAKE2B 2d5b99c17a9df48a36871f18701efacfaa1e6bb89c0e5c6516fc20966547f34f9079dc52ab18ac7816e0fed25d6230076246e83dc648501553fa2d0cad67b8e4 SHA512 b7330613ee9795f54cde3dd9f7509be83d9156fb8577c17179727ee01450db27704249f68bd48e0331e2df09c2d9833d8bb019c4f9ce9ba669df74650ff2e842
DIST R-4.0.4.tar.gz 33687611 BLAKE2B 40cdfd98fe6c9193deb729d151631c2b0f935accf5ea6251704b633d2688278af1a5a67317152be023fb4a10315c64e473f58276bb0c3fadb1141c35391ad22e SHA512 811c4407a083eb776f92c3cbacb1dc7eada8890a8c27678c6c82bef9db52b1afaefeb408fbe11e46922740adee498f32e7ddf7451b3ab89cf60773737e47f8be
+DIST R-4.0.5.tar.gz 32466444 BLAKE2B 5dbbd289f4fd6347b4109eecaf65b50b5793a83edddd2cb391c20473607f136d91a8e9f4ab9e453f6927d2ca9145762920424e3a1dcea89309afde56efd5d32c SHA512 6ff5b0f9cb6b17f66cde1f5585d1b33659dbae8919d34c2e593f68a0bff4d0425aa9704d99284d103702a9cd42f613311f3a87af6b939b1af65dcec80bf2ca8c
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.0.5.ebuild b/dev-lang/R/R-4.0.5.ebuild
new file mode 100644
index 00000000000..560e83d01f7
--- /dev/null
+++ b/dev-lang/R/R-4.0.5.ebuild
@@ -0,0 +1,243 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
+
+# One test required profiling in v4.0.2, check the upstream bug:
+#
+# https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17836
+#
+REQUIRED_USE="png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )
+ test? ( profile )
+"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+BDEPEND="virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+DEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas:0
+ || ( sys-apps/coreutils app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+RDEPEND="${DEPEND}
+ sys-libs/zlib:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )
+ !test? ( test )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4
+ eautoreconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
+ EOF
+ doenvd 99R
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x "/usr/share/doc/${PF}/${f}"
+ done
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-03-28 19:44 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2021-03-28 19:44 UTC (permalink / raw
To: gentoo-commits
commit: 98619693ef1b38fb8827852e88bb1b3155b46eca
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 28 19:43:00 2021 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sun Mar 28 19:44:00 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=98619693
dev-lang/R: Stabilize 4.0.4 arm64, #765361
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.0.4.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.0.4.ebuild b/dev-lang/R/R-4.0.4.ebuild
index f5bd6158058..df95c6aa5ae 100644
--- a/dev-lang/R/R-4.0.4.ebuild
+++ b/dev-lang/R/R-4.0.4.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~sparc x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 ~sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
# One test required profiling in v4.0.2, check the upstream bug:
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-03-28 11:00 Sam James
0 siblings, 0 replies; 103+ messages in thread
From: Sam James @ 2021-03-28 11:00 UTC (permalink / raw
To: gentoo-commits
commit: 9aff795bd153681fe94f999cfd9f8a9263807ac4
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 28 10:58:59 2021 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sun Mar 28 10:58:59 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9aff795b
dev-lang/R: Stabilize 4.0.4 x86, #765361
Signed-off-by: Sam James <sam <AT> gentoo.org>
dev-lang/R/R-4.0.4.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.0.4.ebuild b/dev-lang/R/R-4.0.4.ebuild
index 71c2eb33b3f..f5bd6158058 100644
--- a/dev-lang/R/R-4.0.4.ebuild
+++ b/dev-lang/R/R-4.0.4.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
# One test required profiling in v4.0.2, check the upstream bug:
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-03-19 18:07 Mikle Kolyada
0 siblings, 0 replies; 103+ messages in thread
From: Mikle Kolyada @ 2021-03-19 18:07 UTC (permalink / raw
To: gentoo-commits
commit: 3acd15634da49904ebabf38298715ac1a9d07b7f
Author: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
AuthorDate: Fri Mar 19 18:07:52 2021 +0000
Commit: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
CommitDate: Fri Mar 19 18:07:52 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3acd1563
dev-lang/R: Stabilize 4.0.4 amd64, #765361
Signed-off-by: Mikle Kolyada <zlogene <AT> gentoo.org>
dev-lang/R/R-4.0.4.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-4.0.4.ebuild b/dev-lang/R/R-4.0.4.ebuild
index 560e83d01f7..71c2eb33b3f 100644
--- a/dev-lang/R/R-4.0.4.ebuild
+++ b/dev-lang/R/R-4.0.4.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
# One test required profiling in v4.0.2, check the upstream bug:
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2021-03-05 13:46 Mikle Kolyada
0 siblings, 0 replies; 103+ messages in thread
From: Mikle Kolyada @ 2021-03-05 13:46 UTC (permalink / raw
To: gentoo-commits
commit: ce6e78601bb5c33852051754f575272a05ef9c5c
Author: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
AuthorDate: Fri Mar 5 12:55:15 2021 +0000
Commit: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
CommitDate: Fri Mar 5 13:35:11 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ce6e7860
dev-lang/R: Version bump (v4.0.4)
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Mikle Kolyada <zlogene <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.0.4.ebuild | 243 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 244 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 4e4ba5f0d22..fa930a03bf5 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,4 +1,5 @@
DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
DIST R-3.6.3.tar.gz 33308185 BLAKE2B f82751e21d3b502132f8f27d4fc47a921fb085a50c3da3b45e08fbbdd1ab3d42e89b4fa6653a570c21176d79f492277b1d0b86c3c9f4da1386d8b6e4771d4d2c SHA512 9b1dc78922e431bd1af81e6e560b10ad04d121718f680fed32db735d561fd40ea6028759976722db11559f1a78fe684119b766f0567128cb2ee5003aa87a0931
DIST R-4.0.2.tar.gz 33191186 BLAKE2B 2d5b99c17a9df48a36871f18701efacfaa1e6bb89c0e5c6516fc20966547f34f9079dc52ab18ac7816e0fed25d6230076246e83dc648501553fa2d0cad67b8e4 SHA512 b7330613ee9795f54cde3dd9f7509be83d9156fb8577c17179727ee01450db27704249f68bd48e0331e2df09c2d9833d8bb019c4f9ce9ba669df74650ff2e842
+DIST R-4.0.4.tar.gz 33687611 BLAKE2B 40cdfd98fe6c9193deb729d151631c2b0f935accf5ea6251704b633d2688278af1a5a67317152be023fb4a10315c64e473f58276bb0c3fadb1141c35391ad22e SHA512 811c4407a083eb776f92c3cbacb1dc7eada8890a8c27678c6c82bef9db52b1afaefeb408fbe11e46922740adee498f32e7ddf7451b3ab89cf60773737e47f8be
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.0.4.ebuild b/dev-lang/R/R-4.0.4.ebuild
new file mode 100644
index 00000000000..560e83d01f7
--- /dev/null
+++ b/dev-lang/R/R-4.0.4.ebuild
@@ -0,0 +1,243 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
+
+# One test required profiling in v4.0.2, check the upstream bug:
+#
+# https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17836
+#
+REQUIRED_USE="png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )
+ test? ( profile )
+"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+BDEPEND="virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+DEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas:0
+ || ( sys-apps/coreutils app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+RDEPEND="${DEPEND}
+ sys-libs/zlib:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )
+ !test? ( test )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4
+ eautoreconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
+ EOF
+ doenvd 99R
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x "/usr/share/doc/${PF}/${f}"
+ done
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2020-12-13 16:59 Fabian Groffen
0 siblings, 0 replies; 103+ messages in thread
From: Fabian Groffen @ 2020-12-13 16:59 UTC (permalink / raw
To: gentoo-commits
commit: 8a27553c3b1915174847f348f4e7b42f358308f5
Author: Fabian Groffen <grobian <AT> gentoo <DOT> org>
AuthorDate: Sun Dec 13 16:59:30 2020 +0000
Commit: Fabian Groffen <grobian <AT> gentoo <DOT> org>
CommitDate: Sun Dec 13 16:59:30 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8a27553c
dev-lang/R: drop ~x64-macos keyword
Closes: https://bugs.gentoo.org/575860
Package-Manager: Portage-3.0.9, Repoman-3.0.2
Signed-off-by: Fabian Groffen <grobian <AT> gentoo.org>
dev-lang/R/R-3.4.1.ebuild | 2 +-
dev-lang/R/R-3.6.3-r1.ebuild | 2 +-
dev-lang/R/R-4.0.2.ebuild | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/dev-lang/R/R-3.4.1.ebuild b/dev-lang/R/R-3.4.1.ebuild
index b5406437114..39b6d57442c 100644
--- a/dev-lang/R/R-3.4.1.ebuild
+++ b/dev-lang/R/R-3.4.1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
diff --git a/dev-lang/R/R-3.6.3-r1.ebuild b/dev-lang/R/R-3.6.3-r1.ebuild
index 274948dece1..bd149544e48 100644
--- a/dev-lang/R/R-3.6.3-r1.ebuild
+++ b/dev-lang/R/R-3.6.3-r1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
diff --git a/dev-lang/R/R-4.0.2.ebuild b/dev-lang/R/R-4.0.2.ebuild
index 83d1ecd9385..f900a51189f 100644
--- a/dev-lang/R/R-4.0.2.ebuild
+++ b/dev-lang/R/R-4.0.2.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
# One test required profiling in v4.0.2, check the upstream bug:
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2020-06-22 23:38 Michael Orlitzky
0 siblings, 0 replies; 103+ messages in thread
From: Michael Orlitzky @ 2020-06-22 23:38 UTC (permalink / raw
To: gentoo-commits
commit: 62b3e0341e86460cb0d3c1abbfe79342cd606035
Author: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 22 23:35:56 2020 +0000
Commit: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
CommitDate: Mon Jun 22 23:38:28 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=62b3e034
dev-lang/R: new version 4.0.2.
I swapped out pcre for pcre2 and had to require USE=profile to run the
test suite, but other than that a copy/paste.
Package-Manager: Portage-2.3.99, Repoman-2.3.22
Signed-off-by: Michael Orlitzky <mjo <AT> gentoo.org>
dev-lang/R/Manifest | 2 +-
dev-lang/R/{R-4.0.0.ebuild => R-4.0.2.ebuild} | 13 +++++++++++--
2 files changed, 12 insertions(+), 3 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 18eb82e449d..4e4ba5f0d22 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,4 +1,4 @@
DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
DIST R-3.6.3.tar.gz 33308185 BLAKE2B f82751e21d3b502132f8f27d4fc47a921fb085a50c3da3b45e08fbbdd1ab3d42e89b4fa6653a570c21176d79f492277b1d0b86c3c9f4da1386d8b6e4771d4d2c SHA512 9b1dc78922e431bd1af81e6e560b10ad04d121718f680fed32db735d561fd40ea6028759976722db11559f1a78fe684119b766f0567128cb2ee5003aa87a0931
-DIST R-4.0.0.tar.gz 33173947 BLAKE2B 6b67ba5b008f1fd3d5fa3c92805c1e206ece64e821124e3b2d6f72a550ed8084699916b88d41dcc1985b57a286518dcf63d240503aeb2ae7fe31e66c0d30396d SHA512 fa8b684fd0c8a1c9784b8e0e749b34141e513a83d4f3b6792cdf97826264191e7484f6705014974c9268570e717e1a1d39f6a88225fc751189b6f51e1a303163
+DIST R-4.0.2.tar.gz 33191186 BLAKE2B 2d5b99c17a9df48a36871f18701efacfaa1e6bb89c0e5c6516fc20966547f34f9079dc52ab18ac7816e0fed25d6230076246e83dc648501553fa2d0cad67b8e4 SHA512 b7330613ee9795f54cde3dd9f7509be83d9156fb8577c17179727ee01450db27704249f68bd48e0331e2df09c2d9833d8bb019c4f9ce9ba669df74650ff2e842
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.0.0.ebuild b/dev-lang/R/R-4.0.2.ebuild
similarity index 96%
rename from dev-lang/R/R-4.0.0.ebuild
rename to dev-lang/R/R-4.0.2.ebuild
index 64a0a4e0b49..83d1ecd9385 100644
--- a/dev-lang/R/R-4.0.0.ebuild
+++ b/dev-lang/R/R-4.0.2.ebuild
@@ -18,7 +18,16 @@ LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+# One test required profiling in v4.0.2, check the upstream bug:
+#
+# https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17836
+#
+REQUIRED_USE="png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )
+ test? ( profile )
+"
# At least one package installation in the test suite requires TeX,
# and will fail without it (bug #718056).
@@ -32,7 +41,7 @@ DEPEND="
app-arch/bzip2:0=
app-arch/xz-utils:0=
app-text/ghostscript-gpl
- dev-libs/libpcre:3=
+ dev-libs/libpcre2:=
net-libs/libtirpc
net-misc/curl
virtual/blas:0
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2020-05-24 5:04 Mark Wright
0 siblings, 0 replies; 103+ messages in thread
From: Mark Wright @ 2020-05-24 5:04 UTC (permalink / raw
To: gentoo-commits
commit: c50d7c8594743247a9df75e21ad0dd6dc3747911
Author: Mark Wright <gienah <AT> gentoo <DOT> org>
AuthorDate: Sun May 24 05:00:04 2020 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Sun May 24 05:00:04 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c50d7c85
dev-lang/R: Thanks to Neil for help with bump to 4.0.0
Closes: https://bugs.gentoo.org/719210
Package-Manager: Portage-2.3.99, Repoman-2.3.22
Signed-off-by: Mark Wright <gienah <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-4.0.0.ebuild | 234 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 235 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 7fd12a8b015..18eb82e449d 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,4 @@
DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
DIST R-3.6.3.tar.gz 33308185 BLAKE2B f82751e21d3b502132f8f27d4fc47a921fb085a50c3da3b45e08fbbdd1ab3d42e89b4fa6653a570c21176d79f492277b1d0b86c3c9f4da1386d8b6e4771d4d2c SHA512 9b1dc78922e431bd1af81e6e560b10ad04d121718f680fed32db735d561fd40ea6028759976722db11559f1a78fe684119b766f0567128cb2ee5003aa87a0931
+DIST R-4.0.0.tar.gz 33173947 BLAKE2B 6b67ba5b008f1fd3d5fa3c92805c1e206ece64e821124e3b2d6f72a550ed8084699916b88d41dcc1985b57a286518dcf63d240503aeb2ae7fe31e66c0d30396d SHA512 fa8b684fd0c8a1c9784b8e0e749b34141e513a83d4f3b6792cdf97826264191e7484f6705014974c9268570e717e1a1d39f6a88225fc751189b6f51e1a303163
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.0.0.ebuild b/dev-lang/R/R-4.0.0.ebuild
new file mode 100644
index 00000000000..64a0a4e0b49
--- /dev/null
+++ b/dev-lang/R/R-4.0.0.ebuild
@@ -0,0 +1,234 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+BDEPEND="virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+DEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ dev-libs/libpcre:3=
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas:0
+ || ( sys-apps/coreutils app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+RDEPEND="${DEPEND}
+ sys-libs/zlib:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )
+ !test? ( test )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4
+ eautoreconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
+ EOF
+ doenvd 99R
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x "/usr/share/doc/${PF}/${f}"
+ done
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2020-04-28 15:34 Michael Orlitzky
0 siblings, 0 replies; 103+ messages in thread
From: Michael Orlitzky @ 2020-04-28 15:34 UTC (permalink / raw
To: gentoo-commits
commit: 8f4f964350c4e5aa6f31af96c7271d39d2a7794a
Author: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 28 15:27:27 2020 +0000
Commit: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
CommitDate: Tue Apr 28 15:33:52 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8f4f9643
dev-lang/R: pull in LaTeX stuff for the test suite.
At least one test (reg-packages.R) tries to run texi2dvi which in turn
looks for /usr/bin/tex, and will fail without it. This commit adds
IUSE=test, and pulls in virtual/latex-base when it is set.
Bug: https://bugs.gentoo.org/718056
Package-Manager: Portage-2.3.89, Repoman-2.3.20
Signed-off-by: Michael Orlitzky <mjo <AT> gentoo.org>
dev-lang/R/R-3.6.3-r1.ebuild | 10 +++++++---
1 file changed, 7 insertions(+), 3 deletions(-)
diff --git a/dev-lang/R/R-3.6.3-r1.ebuild b/dev-lang/R/R-3.6.3-r1.ebuild
index 0f45bd0490e..274948dece1 100644
--- a/dev-lang/R/R-3.6.3-r1.ebuild
+++ b/dev-lang/R/R-3.6.3-r1.ebuild
@@ -17,14 +17,17 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
BDEPEND="virtual/pkgconfig
doc? (
virtual/latex-base
dev-texlive/texlive-fontsrecommended
- )"
+ )
+ test? ( virtual/latex-base )"
DEPEND="
app-arch/bzip2:0=
app-arch/xz-utils:0=
@@ -49,7 +52,8 @@ RDEPEND="${DEPEND}
sys-libs/zlib:0[minizip]
java? ( >=virtual/jre-1.5 )"
-RESTRICT="minimal? ( test )"
+RESTRICT="minimal? ( test )
+ !test? ( test )"
PATCHES=(
"${FILESDIR}"/${PN}-3.4.1-parallel.patch
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2020-04-18 1:33 Michael Orlitzky
0 siblings, 0 replies; 103+ messages in thread
From: Michael Orlitzky @ 2020-04-18 1:33 UTC (permalink / raw
To: gentoo-commits
commit: de035788fb8ceddd4a7b3fd038537f2e530009f1
Author: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
AuthorDate: Fri Apr 17 23:23:38 2020 +0000
Commit: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
CommitDate: Sat Apr 18 01:31:10 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=de035788
dev-lang/R: new revision that leaves more docs uncompressed.
The R interactive shell encourages users to read several documentation
files using functions like contributors() and RShowDoc() that rely on
the files being installed with their god-given names. This new revision
tries to fix a few of the more common ones with docompress -x.
Closes: https://bugs.gentoo.org/556706
Package-Manager: Portage-2.3.89, Repoman-2.3.20
Signed-off-by: Michael Orlitzky <mjo <AT> gentoo.org>
dev-lang/R/{R-3.6.3.ebuild => R-3.6.3-r1.ebuild} | 32 +++++++++++++++++++++++-
1 file changed, 31 insertions(+), 1 deletion(-)
diff --git a/dev-lang/R/R-3.6.3.ebuild b/dev-lang/R/R-3.6.3-r1.ebuild
similarity index 86%
rename from dev-lang/R/R-3.6.3.ebuild
rename to dev-lang/R/R-3.6.3-r1.ebuild
index f797705dcd7..0f45bd0490e 100644
--- a/dev-lang/R/R-3.6.3.ebuild
+++ b/dev-lang/R/R-3.6.3-r1.ebuild
@@ -189,7 +189,37 @@ src_install() {
done
popd > /dev/null
fi
- docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x "/usr/share/doc/${PF}/${f}"
+ done
}
pkg_postinst() {
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2020-03-25 15:13 Michael Orlitzky
0 siblings, 0 replies; 103+ messages in thread
From: Michael Orlitzky @ 2020-03-25 15:13 UTC (permalink / raw
To: gentoo-commits
commit: d2c43613675062b8745189186ca02b5922cda150
Author: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
AuthorDate: Wed Mar 25 14:58:11 2020 +0000
Commit: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
CommitDate: Wed Mar 25 15:10:12 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d2c43613
dev-lang/R: new version 3.6.3.
I reorganized some things into BDEPEND, but other than that, a
standard version bump.
Package-Manager: Portage-2.3.89, Repoman-2.3.20
Signed-off-by: Michael Orlitzky <mjo <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-3.6.3.ebuild | 200 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 201 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index e02181ffa37..9db20651cde 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -2,4 +2,5 @@ DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4
DIST R-3.5.3.tar.gz 30205979 BLAKE2B 60dde4c1a7874df0b113630577d943d581d9e0844383a5cb7eda7f62470177d541704a888c33ded216f8b1f088cda493d7716693f5e2451effe3639ce2286dd1 SHA512 077cbd4bc9f19a3a2485afbd4d8e08e0754ddcb9a10164cbc8478f239d5ed0ffaf6796929f154cce1c8aea549c32d460049fc036dc326174d1dbb0a1ddb5f5ef
DIST R-3.6.0.tar.gz 30449618 BLAKE2B 2fb2f1252f5ead97ab42eb1f71fa0be1e8aec2f6cce182956ec1c35b43b70b58f579faf5f3ca11efb8e9c24a9ed836b5b690cb23858249bc7f575aca4709bc3b SHA512 b2e17b909b6387abb964492e2e9370f913295ca7ac99bab0e965c43ed3c4635e27468c326fb2bca3c529b03c731b0170d9e777a194ad4d6c5a983c050223d8c8
DIST R-3.6.2.tar.gz 33311930 BLAKE2B 53f344e80e017064a275c271d98be714e210193931a120e7ebc79ee6cf0ebc0c24c090acc25560998f26600c05305147816ab782632d99beaea83b3a9b5e2a21 SHA512 17513e9f4dd27c61c11f7aa45227aeeeefb375bf5d4e193b471724f379a1b2da33e127cbe91aa175cbbbb048b892047e2f610280585c8159242a6c94790b07f9
+DIST R-3.6.3.tar.gz 33308185 BLAKE2B f82751e21d3b502132f8f27d4fc47a921fb085a50c3da3b45e08fbbdd1ab3d42e89b4fa6653a570c21176d79f492277b1d0b86c3c9f4da1386d8b6e4771d4d2c SHA512 9b1dc78922e431bd1af81e6e560b10ad04d121718f680fed32db735d561fd40ea6028759976722db11559f1a78fe684119b766f0567128cb2ee5003aa87a0931
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-3.6.3.ebuild b/dev-lang/R/R-3.6.3.ebuild
new file mode 100644
index 00000000000..f797705dcd7
--- /dev/null
+++ b/dev-lang/R/R-3.6.3.ebuild
@@ -0,0 +1,200 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-3/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+BDEPEND="virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+DEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ dev-libs/libpcre:3=
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas:0
+ || ( sys-apps/coreutils app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+RDEPEND="${DEPEND}
+ sys-libs/zlib:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4
+ eautoreconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
+ EOF
+ doenvd 99R
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2020-03-25 15:13 Michael Orlitzky
0 siblings, 0 replies; 103+ messages in thread
From: Michael Orlitzky @ 2020-03-25 15:13 UTC (permalink / raw
To: gentoo-commits
commit: e8c9f87bd5ebdcf7ebc5af973abe52c0a9084e97
Author: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
AuthorDate: Wed Mar 25 15:06:10 2020 +0000
Commit: Michael Orlitzky <mjo <AT> gentoo <DOT> org>
CommitDate: Wed Mar 25 15:10:12 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e8c9f87b
dev-lang/R: remove old "unused" versions.
Package-Manager: Portage-2.3.89, Repoman-2.3.20
Signed-off-by: Michael Orlitzky <mjo <AT> gentoo.org>
dev-lang/R/Manifest | 3 -
dev-lang/R/R-3.5.3.ebuild | 204 ---------------------------------------------
dev-lang/R/R-3.6.0.ebuild | 204 ---------------------------------------------
dev-lang/R/R-3.6.2.ebuild | 206 ----------------------------------------------
4 files changed, 617 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 9db20651cde..7fd12a8b015 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,6 +1,3 @@
DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
-DIST R-3.5.3.tar.gz 30205979 BLAKE2B 60dde4c1a7874df0b113630577d943d581d9e0844383a5cb7eda7f62470177d541704a888c33ded216f8b1f088cda493d7716693f5e2451effe3639ce2286dd1 SHA512 077cbd4bc9f19a3a2485afbd4d8e08e0754ddcb9a10164cbc8478f239d5ed0ffaf6796929f154cce1c8aea549c32d460049fc036dc326174d1dbb0a1ddb5f5ef
-DIST R-3.6.0.tar.gz 30449618 BLAKE2B 2fb2f1252f5ead97ab42eb1f71fa0be1e8aec2f6cce182956ec1c35b43b70b58f579faf5f3ca11efb8e9c24a9ed836b5b690cb23858249bc7f575aca4709bc3b SHA512 b2e17b909b6387abb964492e2e9370f913295ca7ac99bab0e965c43ed3c4635e27468c326fb2bca3c529b03c731b0170d9e777a194ad4d6c5a983c050223d8c8
-DIST R-3.6.2.tar.gz 33311930 BLAKE2B 53f344e80e017064a275c271d98be714e210193931a120e7ebc79ee6cf0ebc0c24c090acc25560998f26600c05305147816ab782632d99beaea83b3a9b5e2a21 SHA512 17513e9f4dd27c61c11f7aa45227aeeeefb375bf5d4e193b471724f379a1b2da33e127cbe91aa175cbbbb048b892047e2f610280585c8159242a6c94790b07f9
DIST R-3.6.3.tar.gz 33308185 BLAKE2B f82751e21d3b502132f8f27d4fc47a921fb085a50c3da3b45e08fbbdd1ab3d42e89b4fa6653a570c21176d79f492277b1d0b86c3c9f4da1386d8b6e4771d4d2c SHA512 9b1dc78922e431bd1af81e6e560b10ad04d121718f680fed32db735d561fd40ea6028759976722db11559f1a78fe684119b766f0567128cb2ee5003aa87a0931
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-3.5.3.ebuild b/dev-lang/R/R-3.5.3.ebuild
deleted file mode 100644
index 66c38fbe2f1..00000000000
--- a/dev-lang/R/R-3.5.3.ebuild
+++ /dev/null
@@ -1,204 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- net-libs/libtirpc
- net-misc/curl
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- if ! tc-check-openmp; then
- ewarn "OpenMP is not available in your current selected compiler"
- die "need openmp capable compiler"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4
- eautoreconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-3.6.0.ebuild b/dev-lang/R/R-3.6.0.ebuild
deleted file mode 100644
index 66c38fbe2f1..00000000000
--- a/dev-lang/R/R-3.6.0.ebuild
+++ /dev/null
@@ -1,204 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- net-libs/libtirpc
- net-misc/curl
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- if ! tc-check-openmp; then
- ewarn "OpenMP is not available in your current selected compiler"
- die "need openmp capable compiler"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4
- eautoreconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-3.6.2.ebuild b/dev-lang/R/R-3.6.2.ebuild
deleted file mode 100644
index d9a391d0f87..00000000000
--- a/dev-lang/R/R-3.6.2.ebuild
+++ /dev/null
@@ -1,206 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- dev-libs/libpcre:3=
- net-libs/libtirpc
- net-misc/curl
- virtual/blas:0
- || ( sys-apps/coreutils app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- sys-libs/zlib:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- if ! tc-check-openmp; then
- ewarn "OpenMP is not available in your current selected compiler"
- die "need openmp capable compiler"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4
- eautoreconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2020-01-13 9:49 Mark Wright
0 siblings, 0 replies; 103+ messages in thread
From: Mark Wright @ 2020-01-13 9:49 UTC (permalink / raw
To: gentoo-commits
commit: 18e931904a9ee33e5ee0a0e9bb1fdfff1ca19402
Author: Mark Wright <gienah <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 13 09:36:37 2020 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Mon Jan 13 09:49:36 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=18e93190
dev-lang/R: Add ~arm64 since 3.4.1 has arm64
Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Mark Wright <gienah <AT> gentoo.org>
dev-lang/R/R-3.5.3.ebuild | 2 +-
dev-lang/R/R-3.6.0.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/dev-lang/R/R-3.5.3.ebuild b/dev-lang/R/R-3.5.3.ebuild
index 47ea21402fb..df86d706389 100644
--- a/dev-lang/R/R-3.5.3.ebuild
+++ b/dev-lang/R/R-3.5.3.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
diff --git a/dev-lang/R/R-3.6.0.ebuild b/dev-lang/R/R-3.6.0.ebuild
index 47ea21402fb..df86d706389 100644
--- a/dev-lang/R/R-3.6.0.ebuild
+++ b/dev-lang/R/R-3.6.0.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2020-01-13 9:49 Mark Wright
0 siblings, 0 replies; 103+ messages in thread
From: Mark Wright @ 2020-01-13 9:49 UTC (permalink / raw
To: gentoo-commits
commit: 88c4286ddda1134307f43fbd565492539b0002e6
Author: Mark Wright <gienah <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 13 09:33:37 2020 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Mon Jan 13 09:49:35 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=88c4286d
dev-lang/R: Remove dep sys-freebsd/freebsd-bin
Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Mark Wright <gienah <AT> gentoo.org>
dev-lang/R/R-3.4.1.ebuild | 4 ++--
dev-lang/R/R-3.5.3.ebuild | 4 ++--
dev-lang/R/R-3.6.0.ebuild | 4 ++--
3 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/dev-lang/R/R-3.4.1.ebuild b/dev-lang/R/R-3.4.1.ebuild
index 703845547de..7c3401e2fc9 100644
--- a/dev-lang/R/R-3.4.1.ebuild
+++ b/dev-lang/R/R-3.4.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -27,7 +27,7 @@ CDEPEND="
>=dev-libs/libpcre-8.35:3=
net-misc/curl
virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ || ( >=sys-apps/coreutils-8.15 app-misc/realpath )
cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
icu? ( dev-libs/icu:= )
jpeg? ( virtual/jpeg:0 )
diff --git a/dev-lang/R/R-3.5.3.ebuild b/dev-lang/R/R-3.5.3.ebuild
index 1d09832746b..47ea21402fb 100644
--- a/dev-lang/R/R-3.5.3.ebuild
+++ b/dev-lang/R/R-3.5.3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -28,7 +28,7 @@ CDEPEND="
net-libs/libtirpc
net-misc/curl
virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ || ( >=sys-apps/coreutils-8.15 app-misc/realpath )
cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
icu? ( dev-libs/icu:= )
jpeg? ( virtual/jpeg:0 )
diff --git a/dev-lang/R/R-3.6.0.ebuild b/dev-lang/R/R-3.6.0.ebuild
index 1d09832746b..47ea21402fb 100644
--- a/dev-lang/R/R-3.6.0.ebuild
+++ b/dev-lang/R/R-3.6.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -28,7 +28,7 @@ CDEPEND="
net-libs/libtirpc
net-misc/curl
virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ || ( >=sys-apps/coreutils-8.15 app-misc/realpath )
cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
icu? ( dev-libs/icu:= )
jpeg? ( virtual/jpeg:0 )
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2019-10-16 12:43 Jeroen Roovers
0 siblings, 0 replies; 103+ messages in thread
From: Jeroen Roovers @ 2019-10-16 12:43 UTC (permalink / raw
To: gentoo-commits
commit: b03399b1e18580f7f8303912145a6074afb949d1
Author: Jeroen Roovers <jer <AT> gentoo <DOT> org>
AuthorDate: Wed Oct 16 12:01:02 2019 +0000
Commit: Jeroen Roovers <jer <AT> gentoo <DOT> org>
CommitDate: Wed Oct 16 12:43:18 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b03399b1
dev-lang/R: Mark ~hppa too
Package-Manager: Portage-2.3.77, Repoman-2.3.17
RepoMan-Options: --ignore-arches
Signed-off-by: Jeroen Roovers <jer <AT> gentoo.org>
dev-lang/R/R-3.4.1.ebuild | 2 +-
dev-lang/R/R-3.5.3.ebuild | 2 +-
dev-lang/R/R-3.6.0.ebuild | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/dev-lang/R/R-3.4.1.ebuild b/dev-lang/R/R-3.4.1.ebuild
index 52d611535b4..703845547de 100644
--- a/dev-lang/R/R-3.4.1.ebuild
+++ b/dev-lang/R/R-3.4.1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 arm64 ia64 sparc x86 ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 arm64 ~hppa ia64 sparc x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
diff --git a/dev-lang/R/R-3.5.3.ebuild b/dev-lang/R/R-3.5.3.ebuild
index b9a1b267e51..1d09832746b 100644
--- a/dev-lang/R/R-3.5.3.ebuild
+++ b/dev-lang/R/R-3.5.3.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
diff --git a/dev-lang/R/R-3.6.0.ebuild b/dev-lang/R/R-3.6.0.ebuild
index b9a1b267e51..1d09832746b 100644
--- a/dev-lang/R/R-3.6.0.ebuild
+++ b/dev-lang/R/R-3.6.0.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2019-07-26 20:41 Aaron Bauman
0 siblings, 0 replies; 103+ messages in thread
From: Aaron Bauman @ 2019-07-26 20:41 UTC (permalink / raw
To: gentoo-commits
commit: cc01a76566918b5a02ae9f40d8c88a71fadf57ed
Author: Aaron Bauman <bman <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 26 20:39:54 2019 +0000
Commit: Aaron Bauman <bman <AT> gentoo <DOT> org>
CommitDate: Fri Jul 26 20:41:09 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cc01a765
dev-lang/R: arm64 stable
Signed-off-by: Aaron Bauman <bman <AT> gentoo.org>
Package-Manager: Portage-2.3.69, Repoman-2.3.16
RepoMan-Options: --include-arches="arm64"
dev-lang/R/R-3.4.1.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/dev-lang/R/R-3.4.1.ebuild b/dev-lang/R/R-3.4.1.ebuild
index e273a93fab8..6c503c77a1a 100644
--- a/dev-lang/R/R-3.4.1.ebuild
+++ b/dev-lang/R/R-3.4.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ia64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 arm64 ia64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2019-06-04 17:47 Amy Liffey
0 siblings, 0 replies; 103+ messages in thread
From: Amy Liffey @ 2019-06-04 17:47 UTC (permalink / raw
To: gentoo-commits
commit: cd121187300053974c222d584f34fc99abd5b577
Author: Amy Liffey <amynka <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 4 17:45:46 2019 +0000
Commit: Amy Liffey <amynka <AT> gentoo <DOT> org>
CommitDate: Tue Jun 4 17:45:51 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cd121187
dev-lang/R: remove old 3.2.2, 3.3.2, 3.5.1
Signed-off-by: Amy Liffey <amynka <AT> gentoo.org>
Package-Manager: Portage-2.3.62, Repoman-2.3.11
dev-lang/R/Manifest | 4 -
dev-lang/R/R-3.2.2.ebuild | 205 ----------------------------------------------
dev-lang/R/R-3.3.2.ebuild | 201 ---------------------------------------------
dev-lang/R/R-3.5.1.ebuild | 204 ---------------------------------------------
4 files changed, 614 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index f85c3d58315..32412abdb94 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,8 +1,4 @@
-DIST R-20130129.bash_completion.bz2 4209 BLAKE2B 0afbe9548641cb68a521e4140c48019d21288e32061abba227f8dfcb1398febe7132cc60ebaf9e4e1a226aaca0587d13f982c59e5bd6921fbe932238d6bb96d7 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5
-DIST R-3.2.2.tar.gz 29772864 BLAKE2B f3f7ff9b9bd3cf685712e8997dd5a511a47e56ed261c1039b0540c29e4dd3131cc3052dad2c9a89af04b7bd595d9be7b9c8310206dd5b82244bb274f5a274603 SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138
-DIST R-3.3.2.tar.gz 29440670 BLAKE2B 37308fb0caf19c33196b496d5b6f2f1b5b6f75e3ed985f2f0c4b0633d6191181de7f4cbd1ec986d76089a101d8895493cfe3b8563cfbc36f0b72a1ea14c748c5 SHA512 06a98687c0b180cb0bfd57440ea26088212d9f48948d503136475bf54b42d72cfec5bea7e333c0cedd60733bd614dd0f8c2eced7e24478b6c89f48e8d0c43482
DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
-DIST R-3.5.1.tar.gz 29812849 BLAKE2B 9390934e5da5bd223eee717d4e4c5bd7d47291811318b2fdeac59216081cf9e63119f17bc8fee7235e2426852c50eb5948e6a2a3a632047f41b36460e2584967 SHA512 382cc6e200469dd168799948edcf3a0b869d7ef3b3176fdfc60752f3f37e6ba356323c47d8815a4d9ab6ad3a21cd045d26ef5e75107c8685328e0ffcfd172f7f
DIST R-3.5.3.tar.gz 30205979 BLAKE2B 60dde4c1a7874df0b113630577d943d581d9e0844383a5cb7eda7f62470177d541704a888c33ded216f8b1f088cda493d7716693f5e2451effe3639ce2286dd1 SHA512 077cbd4bc9f19a3a2485afbd4d8e08e0754ddcb9a10164cbc8478f239d5ed0ffaf6796929f154cce1c8aea549c32d460049fc036dc326174d1dbb0a1ddb5f5ef
DIST R-3.6.0.tar.gz 30449618 BLAKE2B 2fb2f1252f5ead97ab42eb1f71fa0be1e8aec2f6cce182956ec1c35b43b70b58f579faf5f3ca11efb8e9c24a9ed836b5b690cb23858249bc7f575aca4709bc3b SHA512 b2e17b909b6387abb964492e2e9370f913295ca7ac99bab0e965c43ed3c4635e27468c326fb2bca3c529b03c731b0170d9e777a194ad4d6c5a983c050223d8c8
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-3.2.2.ebuild b/dev-lang/R/R-3.2.2.ebuild
deleted file mode 100644
index df833c293e4..00000000000
--- a/dev-lang/R/R-3.2.2.ebuild
+++ /dev/null
@@ -1,205 +0,0 @@
-# Copyright 1999-2018 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-BCP=${PN}-20130129.bash_completion
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 ia64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
-
-pkg_setup() {
- if use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -i \
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -i \
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
- src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -i \
- -e 's:\.\./manual/:manual/:g' \
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -i \
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -i \
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4 eaclocal
- eautoconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-system-zlib \
- --with-system-bzlib \
- --with-system-pcre \
- --with-system-xz \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${R_DIR}/lib
- R_HOME=${R_DIR}
- EOF
- doenvd 99R
- newbashcomp "${WORKDIR}"/${BCP} ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/lib/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/NEWS.rds
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-3.3.2.ebuild b/dev-lang/R/R-3.3.2.ebuild
deleted file mode 100644
index 6ca1d812f3e..00000000000
--- a/dev-lang/R/R-3.3.2.ebuild
+++ /dev/null
@@ -1,201 +0,0 @@
-# Copyright 1999-2018 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-BCP=${PN}-20130129.bash_completion
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~ia64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-pkg_setup() {
- if use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch \
- "${FILESDIR}"/${P}-zlib-1.2.10-backport.patch
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -i \
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -i \
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \
- src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -i \
- -e 's:\.\./manual/:manual/:g' \
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -i \
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -i \
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4 eaclocal
- eautoconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${WORKDIR}"/${BCP} ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/lib/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-3.5.1.ebuild b/dev-lang/R/R-3.5.1.ebuild
deleted file mode 100644
index 6c443c1bd29..00000000000
--- a/dev-lang/R/R-3.5.1.ebuild
+++ /dev/null
@@ -1,204 +0,0 @@
-# Copyright 1999-2018 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~ia64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- net-misc/curl
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- if ! tc-check-openmp; then
- ewarn "OpenMP is not available in your current selected compiler"
- die "need openmp capable compiler"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4
- eautoreconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2019-04-07 10:00 Mark Wright
0 siblings, 0 replies; 103+ messages in thread
From: Mark Wright @ 2019-04-07 10:00 UTC (permalink / raw
To: gentoo-commits
commit: 408cbc8406b0ca0f91f46052b3a9e1f6bb4f71f9
Author: Mark Wright <gienah <AT> gentoo <DOT> org>
AuthorDate: Sun Apr 7 09:59:43 2019 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Sun Apr 7 09:59:43 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=408cbc84
sci-mathematics/R: Bump to 3.5.3, thanks Neil for reporting
Add missing dependency net-libs/libtirpc, thanks to Victor Kustov for
reporting.
Change dependency from x11-libs/cairo[X] to x11-libs/cairo[X=],
thanks to Cedric Sodhi for reporting, Felix W for helping.
Closes: https://bugs.gentoo.org/674858
Closes: https://bugs.gentoo.org/661878
Closes: https://bugs.gentoo.org/638778
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Mark Wright <gienah <AT> gentoo.org>
dev-lang/R/Manifest | 1 +
dev-lang/R/R-3.5.3.ebuild | 205 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 206 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index dd164dbdc77..ef092e2cf42 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -3,4 +3,5 @@ DIST R-3.2.2.tar.gz 29772864 BLAKE2B f3f7ff9b9bd3cf685712e8997dd5a511a47e56ed261
DIST R-3.3.2.tar.gz 29440670 BLAKE2B 37308fb0caf19c33196b496d5b6f2f1b5b6f75e3ed985f2f0c4b0633d6191181de7f4cbd1ec986d76089a101d8895493cfe3b8563cfbc36f0b72a1ea14c748c5 SHA512 06a98687c0b180cb0bfd57440ea26088212d9f48948d503136475bf54b42d72cfec5bea7e333c0cedd60733bd614dd0f8c2eced7e24478b6c89f48e8d0c43482
DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
DIST R-3.5.1.tar.gz 29812849 BLAKE2B 9390934e5da5bd223eee717d4e4c5bd7d47291811318b2fdeac59216081cf9e63119f17bc8fee7235e2426852c50eb5948e6a2a3a632047f41b36460e2584967 SHA512 382cc6e200469dd168799948edcf3a0b869d7ef3b3176fdfc60752f3f37e6ba356323c47d8815a4d9ab6ad3a21cd045d26ef5e75107c8685328e0ffcfd172f7f
+DIST R-3.5.3.tar.gz 30205979 BLAKE2B 60dde4c1a7874df0b113630577d943d581d9e0844383a5cb7eda7f62470177d541704a888c33ded216f8b1f088cda493d7716693f5e2451effe3639ce2286dd1 SHA512 077cbd4bc9f19a3a2485afbd4d8e08e0754ddcb9a10164cbc8478f239d5ed0ffaf6796929f154cce1c8aea549c32d460049fc036dc326174d1dbb0a1ddb5f5ef
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-3.5.3.ebuild b/dev-lang/R/R-3.5.3.ebuild
new file mode 100644
index 00000000000..39eee89799d
--- /dev/null
+++ b/dev-lang/R/R-3.5.3.ebuild
@@ -0,0 +1,205 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-3/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~ia64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+CDEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ >=dev-libs/libpcre-8.35:3=
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas:0
+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+DEPEND="${CDEPEND}
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+
+RDEPEND="${CDEPEND}
+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ if ! tc-check-openmp; then
+ ewarn "OpenMP is not available in your current selected compiler"
+ die "need openmp capable compiler"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4
+ eautoreconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
+ EOF
+ doenvd 99R
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2018-10-12 12:43 Mikle Kolyada
0 siblings, 0 replies; 103+ messages in thread
From: Mikle Kolyada @ 2018-10-12 12:43 UTC (permalink / raw
To: gentoo-commits
commit: 94eaf39e89ff0cb86aced3d5bd35c78d6b368a65
Author: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
AuthorDate: Fri Oct 12 12:42:57 2018 +0000
Commit: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
CommitDate: Fri Oct 12 12:42:57 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=94eaf39e
dev-lang/R: Drop hppa keyword
Signed-off-by: Mikle Kolyada <zlogene <AT> gentoo.org>
Package-Manager: Portage-2.3.49, Repoman-2.3.11
dev-lang/R/R-3.2.2.ebuild | 4 ++--
dev-lang/R/R-3.3.2.ebuild | 4 ++--
dev-lang/R/R-3.4.1.ebuild | 4 ++--
dev-lang/R/R-3.5.1.ebuild | 4 ++--
4 files changed, 8 insertions(+), 8 deletions(-)
diff --git a/dev-lang/R/R-3.2.2.ebuild b/dev-lang/R/R-3.2.2.ebuild
index a4ca3845b1e..df833c293e4 100644
--- a/dev-lang/R/R-3.2.2.ebuild
+++ b/dev-lang/R/R-3.2.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -14,7 +14,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 hppa ia64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 ia64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
diff --git a/dev-lang/R/R-3.3.2.ebuild b/dev-lang/R/R-3.3.2.ebuild
index 2a3cb85b5ce..6ca1d812f3e 100644
--- a/dev-lang/R/R-3.3.2.ebuild
+++ b/dev-lang/R/R-3.3.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -14,7 +14,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 ~ia64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
diff --git a/dev-lang/R/R-3.4.1.ebuild b/dev-lang/R/R-3.4.1.ebuild
index 87ba2dd8f31..e273a93fab8 100644
--- a/dev-lang/R/R-3.4.1.ebuild
+++ b/dev-lang/R/R-3.4.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~hppa ia64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 ia64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
diff --git a/dev-lang/R/R-3.5.1.ebuild b/dev-lang/R/R-3.5.1.ebuild
index 23d0c99a327..6c443c1bd29 100644
--- a/dev-lang/R/R-3.5.1.ebuild
+++ b/dev-lang/R/R-3.5.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 ~ia64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2018-09-27 18:33 Sergei Trofimovich
0 siblings, 0 replies; 103+ messages in thread
From: Sergei Trofimovich @ 2018-09-27 18:33 UTC (permalink / raw
To: gentoo-commits
commit: 479544eccd70bd42ceb466d8fb6ae0f3c60c4d5f
Author: Rolf Eike Beer <eike <AT> sf-mail <DOT> de>
AuthorDate: Thu Sep 27 16:15:02 2018 +0000
Commit: Sergei Trofimovich <slyfox <AT> gentoo <DOT> org>
CommitDate: Thu Sep 27 18:33:43 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=479544ec
dev-lang/R: stable 3.4.1 for sparc, bug #641284
Signed-off-by: Rolf Eike Beer <eike <AT> sf-mail.de>
Package-Manager: Portage-2.3.49, Repoman-2.3.10
RepoMan-Options: --include-arches="sparc"
Signed-off-by: Sergei Trofimovich <slyfox <AT> gentoo.org>
dev-lang/R/R-3.4.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-3.4.1.ebuild b/dev-lang/R/R-3.4.1.ebuild
index a3e84cc1fd8..87ba2dd8f31 100644
--- a/dev-lang/R/R-3.4.1.ebuild
+++ b/dev-lang/R/R-3.4.1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~hppa ia64 ~sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 ~hppa ia64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2018-09-18 1:09 Matt Turner
0 siblings, 0 replies; 103+ messages in thread
From: Matt Turner @ 2018-09-18 1:09 UTC (permalink / raw
To: gentoo-commits
commit: e3f170042c4e4b15fc035c39a8c00e03e147f3b0
Author: Matt Turner <mattst88 <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 18 01:08:23 2018 +0000
Commit: Matt Turner <mattst88 <AT> gentoo <DOT> org>
CommitDate: Tue Sep 18 01:09:23 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e3f17004
dev-lang/R: drop ppc/ppc64 keywords, bug 641284
dev-lang/R/R-3.2.2.ebuild | 2 +-
dev-lang/R/R-3.3.2.ebuild | 2 +-
dev-lang/R/R-3.4.1.ebuild | 2 +-
dev-lang/R/R-3.5.1.ebuild | 2 +-
4 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/dev-lang/R/R-3.2.2.ebuild b/dev-lang/R/R-3.2.2.ebuild
index ae27f02d702..a4ca3845b1e 100644
--- a/dev-lang/R/R-3.2.2.ebuild
+++ b/dev-lang/R/R-3.2.2.ebuild
@@ -14,7 +14,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 hppa ia64 ppc ppc64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 hppa ia64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
diff --git a/dev-lang/R/R-3.3.2.ebuild b/dev-lang/R/R-3.3.2.ebuild
index fb9bde8c312..2a3cb85b5ce 100644
--- a/dev-lang/R/R-3.3.2.ebuild
+++ b/dev-lang/R/R-3.3.2.ebuild
@@ -14,7 +14,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 ~hppa ~ia64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
diff --git a/dev-lang/R/R-3.4.1.ebuild b/dev-lang/R/R-3.4.1.ebuild
index 45c84fd3649..a3e84cc1fd8 100644
--- a/dev-lang/R/R-3.4.1.ebuild
+++ b/dev-lang/R/R-3.4.1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~hppa ia64 ~ppc ~ppc64 ~sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 ~hppa ia64 ~sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
diff --git a/dev-lang/R/R-3.5.1.ebuild b/dev-lang/R/R-3.5.1.ebuild
index 96c6fe5ac78..23d0c99a327 100644
--- a/dev-lang/R/R-3.5.1.ebuild
+++ b/dev-lang/R/R-3.5.1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 ~hppa ~ia64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2018-07-04 0:10 Mark Wright
0 siblings, 0 replies; 103+ messages in thread
From: Mark Wright @ 2018-07-04 0:10 UTC (permalink / raw
To: gentoo-commits
commit: a95fb2c43f530843ab8db95718278e2539f77f62
Author: Mark Wright <gienah <AT> gentoo <DOT> org>
AuthorDate: Wed Jul 4 00:09:32 2018 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Wed Jul 4 00:09:32 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a95fb2c4
dev-lang/R: Bump to 3.5.1
Thanks to Neil for reporting, Daniel M. Weeks, John Dough and Marcel Schilling
for commenting.
Closes: https://bugs.gentoo.org/632364
Closes: https://bugs.gentoo.org/660294
Package-Manager: Portage-2.3.41, Repoman-2.3.9
dev-lang/R/Manifest | 2 +-
dev-lang/R/{R-3.5.1_rc.ebuild => R-3.5.1.ebuild} | 5 +----
2 files changed, 2 insertions(+), 5 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index d69ac509af6..dd164dbdc77 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -2,5 +2,5 @@ DIST R-20130129.bash_completion.bz2 4209 BLAKE2B 0afbe9548641cb68a521e4140c48019
DIST R-3.2.2.tar.gz 29772864 BLAKE2B f3f7ff9b9bd3cf685712e8997dd5a511a47e56ed261c1039b0540c29e4dd3131cc3052dad2c9a89af04b7bd595d9be7b9c8310206dd5b82244bb274f5a274603 SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138
DIST R-3.3.2.tar.gz 29440670 BLAKE2B 37308fb0caf19c33196b496d5b6f2f1b5b6f75e3ed985f2f0c4b0633d6191181de7f4cbd1ec986d76089a101d8895493cfe3b8563cfbc36f0b72a1ea14c748c5 SHA512 06a98687c0b180cb0bfd57440ea26088212d9f48948d503136475bf54b42d72cfec5bea7e333c0cedd60733bd614dd0f8c2eced7e24478b6c89f48e8d0c43482
DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
+DIST R-3.5.1.tar.gz 29812849 BLAKE2B 9390934e5da5bd223eee717d4e4c5bd7d47291811318b2fdeac59216081cf9e63119f17bc8fee7235e2426852c50eb5948e6a2a3a632047f41b36460e2584967 SHA512 382cc6e200469dd168799948edcf3a0b869d7ef3b3176fdfc60752f3f37e6ba356323c47d8815a4d9ab6ad3a21cd045d26ef5e75107c8685328e0ffcfd172f7f
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
-DIST R-patched_2018-06-29.tar.gz 29775566 BLAKE2B 905f2cacd01d151f4d35f1dcba5cdc850958f1dae2ecb334932ec652dad5f964ed861c54878dfee2b6c2880d4ea7894e1e71384975d90a2653f9289fa94e6f82 SHA512 2dafcd57e7821f5ccbce44915e312d24f13de35e6c9ece13185c941de1f4c71e52151a44dc0ad801fac90e0955a26d5c6b47d89656c07cddf4959b34a935d0f9
diff --git a/dev-lang/R/R-3.5.1_rc.ebuild b/dev-lang/R/R-3.5.1.ebuild
similarity index 97%
rename from dev-lang/R/R-3.5.1_rc.ebuild
rename to dev-lang/R/R-3.5.1.ebuild
index c77d3ebacb4..96c6fe5ac78 100644
--- a/dev-lang/R/R-3.5.1_rc.ebuild
+++ b/dev-lang/R/R-3.5.1.ebuild
@@ -10,9 +10,8 @@ BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
DESCRIPTION="Language and environment for statistical computing and graphics"
HOMEPAGE="http://www.r-project.org/"
-# This release candidate is not on the CRAN mirrors
SRC_URI="
- https://stat.ethz.ch/R/daily/R-patched_2018-06-29.tar.gz
+ mirror://cran/src/base/R-3/${P}.tar.gz
https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
@@ -58,8 +57,6 @@ PATCHES=(
"${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
)
-S="${WORKDIR}/R-rc"
-
pkg_pretend() {
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2018-07-03 0:48 Mark Wright
0 siblings, 0 replies; 103+ messages in thread
From: Mark Wright @ 2018-07-03 0:48 UTC (permalink / raw
To: gentoo-commits
commit: c13cb5aef5770ba3e947fb4891b955ce1ebd6b71
Author: Mark Wright <gienah <AT> gentoo <DOT> org>
AuthorDate: Mon Jul 2 11:28:58 2018 +0000
Commit: Mark Wright <gienah <AT> gentoo <DOT> org>
CommitDate: Tue Jul 3 00:47:24 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c13cb5ae
dev-lang/R: Bump to 3.5.1 RC
Thanks to Neil for reporting, John Dough and Daniel M. Weeks for commenting.
Bug: https://bugs.gentoo.org/632364
Package-Manager: Portage-2.3.41, Repoman-2.3.9
dev-lang/R/Manifest | 1 +
dev-lang/R/R-3.5.1_rc.ebuild | 207 +++++++++++++++++++++++++++++++++++++++++++
2 files changed, 208 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index bf671c6578e..d69ac509af6 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -3,3 +3,4 @@ DIST R-3.2.2.tar.gz 29772864 BLAKE2B f3f7ff9b9bd3cf685712e8997dd5a511a47e56ed261
DIST R-3.3.2.tar.gz 29440670 BLAKE2B 37308fb0caf19c33196b496d5b6f2f1b5b6f75e3ed985f2f0c4b0633d6191181de7f4cbd1ec986d76089a101d8895493cfe3b8563cfbc36f0b72a1ea14c748c5 SHA512 06a98687c0b180cb0bfd57440ea26088212d9f48948d503136475bf54b42d72cfec5bea7e333c0cedd60733bd614dd0f8c2eced7e24478b6c89f48e8d0c43482
DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
+DIST R-patched_2018-06-29.tar.gz 29775566 BLAKE2B 905f2cacd01d151f4d35f1dcba5cdc850958f1dae2ecb334932ec652dad5f964ed861c54878dfee2b6c2880d4ea7894e1e71384975d90a2653f9289fa94e6f82 SHA512 2dafcd57e7821f5ccbce44915e312d24f13de35e6c9ece13185c941de1f4c71e52151a44dc0ad801fac90e0955a26d5c6b47d89656c07cddf4959b34a935d0f9
diff --git a/dev-lang/R/R-3.5.1_rc.ebuild b/dev-lang/R/R-3.5.1_rc.ebuild
new file mode 100644
index 00000000000..c77d3ebacb4
--- /dev/null
+++ b/dev-lang/R/R-3.5.1_rc.ebuild
@@ -0,0 +1,207 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+# This release candidate is not on the CRAN mirrors
+SRC_URI="
+ https://stat.ethz.ch/R/daily/R-patched_2018-06-29.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+CDEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ >=dev-libs/libpcre-8.35:3=
+ net-misc/curl
+ virtual/blas:0
+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+DEPEND="${CDEPEND}
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+
+RDEPEND="${CDEPEND}
+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+)
+
+S="${WORKDIR}/R-rc"
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ if ! tc-check-openmp; then
+ ewarn "OpenMP is not available in your current selected compiler"
+ die "need openmp capable compiler"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4
+ eautoreconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
+ EOF
+ doenvd 99R
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2018-04-19 20:19 Mikle Kolyada
0 siblings, 0 replies; 103+ messages in thread
From: Mikle Kolyada @ 2018-04-19 20:19 UTC (permalink / raw
To: gentoo-commits
commit: f119e75354336d3ebce8a8d9e400b36a9c11f635
Author: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 19 20:19:00 2018 +0000
Commit: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
CommitDate: Thu Apr 19 20:19:00 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f119e753
dev-lang/R: amd64 stable wrt bug #641284
Package-Manager: Portage-2.3.24, Repoman-2.3.6
dev-lang/R/R-3.4.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-3.4.1.ebuild b/dev-lang/R/R-3.4.1.ebuild
index 38fe2e291be..3334adcbe8d 100644
--- a/dev-lang/R/R-3.4.1.ebuild
+++ b/dev-lang/R/R-3.4.1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~hppa ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 ~hppa ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2018-04-18 21:04 Sergei Trofimovich
0 siblings, 0 replies; 103+ messages in thread
From: Sergei Trofimovich @ 2018-04-18 21:04 UTC (permalink / raw
To: gentoo-commits
commit: 387b672826ddb3b0b272f52b1b03d8fb37a43c80
Author: Sergei Trofimovich <slyfox <AT> gentoo <DOT> org>
AuthorDate: Wed Apr 18 21:02:08 2018 +0000
Commit: Sergei Trofimovich <slyfox <AT> gentoo <DOT> org>
CommitDate: Wed Apr 18 21:04:08 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=387b6728
dev-lang/R: stable 3.4.1 for ia64, bug #641284
Bug: https://bugs.gentoo.org/641284
Package-Manager: Portage-2.3.28, Repoman-2.3.9
RepoMan-Options: --include-arches="ia64"
dev-lang/R/R-3.4.1.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/dev-lang/R/R-3.4.1.ebuild b/dev-lang/R/R-3.4.1.ebuild
index 85556b03670..38fe2e291be 100644
--- a/dev-lang/R/R-3.4.1.ebuild
+++ b/dev-lang/R/R-3.4.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 ~hppa ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2017-07-27 21:19 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2017-07-27 21:19 UTC (permalink / raw
To: gentoo-commits
commit: 7a407ebe8625949ede4b7532b95363b2061f7904
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Thu Jul 27 21:19:02 2017 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Thu Jul 27 21:19:47 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7a407ebe
dev-lang/R: remove calchan from maintainer list
dev-lang/R/metadata.xml | 4 ----
1 file changed, 4 deletions(-)
diff --git a/dev-lang/R/metadata.xml b/dev-lang/R/metadata.xml
index 30cef9895e3..8972d9ed88c 100644
--- a/dev-lang/R/metadata.xml
+++ b/dev-lang/R/metadata.xml
@@ -1,10 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer type="person">
- <email>calchan@gentoo.org</email>
- <name>Denis Dupeyron</name>
- </maintainer>
<maintainer type="project">
<email>sci-mathematics@gentoo.org</email>
<name>Gentoo Mathematics Project</name>
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2017-07-11 19:30 Justin Lecher
0 siblings, 0 replies; 103+ messages in thread
From: Justin Lecher @ 2017-07-11 19:30 UTC (permalink / raw
To: gentoo-commits
commit: 4b6dbfc8fecf27837182a473fb5635df3ba977e6
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jul 11 19:29:09 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jul 11 19:30:21 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4b6dbfc8
dev-lang/R: Drop version failing with only zlib in tree
Package-Manager: Portage-2.3.6-prefix, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
dev-lang/R/Manifest | 1 -
dev-lang/R/R-3.3.1.ebuild | 200 ----------------------------------------------
2 files changed, 201 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 9403f0b02c9..075c16f710d 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,6 +1,5 @@
DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc
DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
-DIST R-3.3.1.tar.gz 29848329 SHA256 3dc59ae5831f5380f83c169bac2103ad052efe0ecec4ffa74bde4d85a0fda9e2 SHA512 d0ff85e99b9ec9cac672aa30d7d1a854778c6a610bcc5336e8c60c8c74f20856f2bfeae085af793fad646ff45cb4677d9d6dcbaa18212591f72f00a02339f4cd WHIRLPOOL 6e2edb60173a54c8b25d16201c24176b3ea837287e6d306c9d2e2c4578764b0d469d9c17228b6be67dda646a4272f30b331dbbc6238a6e851eb5320f04c7f151
DIST R-3.3.2.tar.gz 29440670 SHA256 d294ad21e9f574fb4828ebb3a94b8cb34f4f304a41687a994be00dd41a4e514c SHA512 06a98687c0b180cb0bfd57440ea26088212d9f48948d503136475bf54b42d72cfec5bea7e333c0cedd60733bd614dd0f8c2eced7e24478b6c89f48e8d0c43482 WHIRLPOOL a68112df87552cc6ca8cd6b78b99dda2a22b8f4cfcd87a4512d541d25ef21358ede1ba71b4d7e9f274bf4e4340de18355a777d9af2ed41c0a498fa11d91cf0d8
DIST R-3.4.1.tar.gz 30200109 SHA256 02b1135d15ea969a3582caeb95594a05e830a6debcdb5b85ed2d5836a6a3fc78 SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651 WHIRLPOOL 1396303a7ef7a0e8920af867e6b68e171152578231c9a7ad5020b494124922aae634c1ce6d0f2b2f8441481736b93c3abffe142f2af78dbb0dbc754c4faec3f1
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 SHA256 7e452a23e0bd96b1076280448d130adab229b8ea37cd4531db77391868a31e97 SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06 WHIRLPOOL 49fd55e6a52d55f0aa15d3a117394793b6fba6f1b69a26911a2b2d7c40a65c8ec2246851edc3abb52849930c48e817ee62319ae8bc1db0a9b802c95fcb1554e0
diff --git a/dev-lang/R/R-3.3.1.ebuild b/dev-lang/R/R-3.3.1.ebuild
deleted file mode 100644
index 05155cdb3ca..00000000000
--- a/dev-lang/R/R-3.3.1.ebuild
+++ /dev/null
@@ -1,200 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-BCP=${PN}-20130129.bash_completion
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-pkg_setup() {
- if use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -i \
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -i \
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \
- src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -i \
- -e 's:\.\./manual/:manual/:g' \
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -i \
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -i \
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4 eaclocal
- eautoconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${WORKDIR}"/${BCP} ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/lib/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2016-12-08 16:35 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2016-12-08 16:35 UTC (permalink / raw
To: gentoo-commits
commit: bda3e8cccb530a8f31303bd14a9b8cef8a58832d
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Thu Dec 8 16:34:25 2016 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Thu Dec 8 16:34:25 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bda3e8cc
dev-lang/R: bump to 3.3.2, thanks to Neil Shephard (bug #598834)
Package-Manager: portage-2.3.3
dev-lang/R/Manifest | 1 +
dev-lang/R/R-3.3.2.ebuild | 201 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 202 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 39b08f5..9ee4c15 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,4 @@
DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc
DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
DIST R-3.3.1.tar.gz 29848329 SHA256 3dc59ae5831f5380f83c169bac2103ad052efe0ecec4ffa74bde4d85a0fda9e2 SHA512 d0ff85e99b9ec9cac672aa30d7d1a854778c6a610bcc5336e8c60c8c74f20856f2bfeae085af793fad646ff45cb4677d9d6dcbaa18212591f72f00a02339f4cd WHIRLPOOL 6e2edb60173a54c8b25d16201c24176b3ea837287e6d306c9d2e2c4578764b0d469d9c17228b6be67dda646a4272f30b331dbbc6238a6e851eb5320f04c7f151
+DIST R-3.3.2.tar.gz 29440670 SHA256 d294ad21e9f574fb4828ebb3a94b8cb34f4f304a41687a994be00dd41a4e514c SHA512 06a98687c0b180cb0bfd57440ea26088212d9f48948d503136475bf54b42d72cfec5bea7e333c0cedd60733bd614dd0f8c2eced7e24478b6c89f48e8d0c43482 WHIRLPOOL a68112df87552cc6ca8cd6b78b99dda2a22b8f4cfcd87a4512d541d25ef21358ede1ba71b4d7e9f274bf4e4340de18355a777d9af2ed41c0a498fa11d91cf0d8
diff --git a/dev-lang/R/R-3.3.2.ebuild b/dev-lang/R/R-3.3.2.ebuild
new file mode 100644
index 00000000..ceeeaf9
--- /dev/null
+++ b/dev-lang/R/R-3.3.2.ebuild
@@ -0,0 +1,201 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
+
+BCP=${PN}-20130129.bash_completion
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-3/${P}.tar.gz
+ https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+CDEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ >=dev-libs/libpcre-8.35:3=
+ virtual/blas:0
+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+DEPEND="${CDEPEND}
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+
+RDEPEND="${CDEPEND}
+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+pkg_setup() {
+ if use openmp; then
+ if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
+ ewarn "OpenMP is not available in your current selected gcc"
+ die "need openmp capable gcc"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
+ "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
+ "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -i \
+ -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -i \
+ -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \
+ src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -i \
+ -e 's:\.\./manual/:manual/:g' \
+ $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -i \
+ -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -i \
+ -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
+ src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4 eaclocal
+ eautoconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
+ EOF
+ doenvd 99R
+ newbashcomp "${WORKDIR}"/${BCP} ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/lib/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2016-09-12 20:24 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2016-09-12 20:24 UTC (permalink / raw
To: gentoo-commits
commit: 5810a1457dce4349179f2169a4e2bf22a8a7a3ad
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 12 20:23:17 2016 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Mon Sep 12 20:23:49 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5810a145
dev-lang/R: fix manifest
dev-lang/R/Manifest | 2 --
1 file changed, 2 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 4ee64de..39b08f5 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,5 +1,3 @@
DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc
DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
-DIST R-3.2.5.tar.gz 29876312 SHA256 60745672dce5ddc201806fa59f6d4e0ba6554d8ed78d0f9f0d79a629978f80b5 SHA512 aff7efa84188dfdd486d48095fadb9fbe1ab5897f9f924b9956d21d955d7cba9e50c1d21af6cca8327af8d1465b10761526a3a3be357c08a536831e7f5fc290b WHIRLPOOL 48b232bac4df9d562253fac3527c5786a6b45b3adeb5e91ad586549254ae1a2b53f0d39bc746cfd6d86094201f9d8e29617a9678780c7c58365f484f679fc7e0
-DIST R-3.3.0.tar.gz 29820067 SHA256 9256b154b1a5993d844bee7b1955cd49c99ad72cef03cce3cd1bdca1310311e4 SHA512 81e9ef761bee4d9322ca785fbed843ab13c2f5b55be769d982a81a7e7694e03980cbc7ee067fc850bd7a17ab65d93be81f27db50d428665773174c690383d4cc WHIRLPOOL bbc694374c778d0bb6e8e6ed6b5ef7b2e5c3dca19507ce58f3a544019f9b4aaf55ebbd4759ac0b880c571ca66826bfd8e88f71d164fd07be13c2797930daab07
DIST R-3.3.1.tar.gz 29848329 SHA256 3dc59ae5831f5380f83c169bac2103ad052efe0ecec4ffa74bde4d85a0fda9e2 SHA512 d0ff85e99b9ec9cac672aa30d7d1a854778c6a610bcc5336e8c60c8c74f20856f2bfeae085af793fad646ff45cb4677d9d6dcbaa18212591f72f00a02339f4cd WHIRLPOOL 6e2edb60173a54c8b25d16201c24176b3ea837287e6d306c9d2e2c4578764b0d469d9c17228b6be67dda646a4272f30b331dbbc6238a6e851eb5320f04c7f151
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2016-09-12 19:47 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2016-09-12 19:47 UTC (permalink / raw
To: gentoo-commits
commit: 8b1e2a2a81492a97874b0b86f301aeda2af1df66
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 12 19:46:49 2016 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Mon Sep 12 19:46:49 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8b1e2a2a
dev-lang/R: remove 3.2.5 and 3.3.0
dev-lang/R/R-3.2.5.ebuild | 206 ----------------------------------------------
dev-lang/R/R-3.3.0.ebuild | 203 ---------------------------------------------
2 files changed, 409 deletions(-)
diff --git a/dev-lang/R/R-3.2.5.ebuild b/dev-lang/R/R-3.2.5.ebuild
deleted file mode 100644
index c8227c9..00000000
--- a/dev-lang/R/R-3.2.5.ebuild
+++ /dev/null
@@ -1,206 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-BCP=${PN}-20130129.bash_completion
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
-
-pkg_setup() {
- if use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -i \
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -i \
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
- src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -i \
- -e 's:\.\./manual/:manual/:g' \
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -i \
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -i \
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4 eaclocal
- eautoconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-system-zlib \
- --with-system-bzlib \
- --with-system-pcre \
- --with-system-xz \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${R_DIR}/lib
- R_HOME=${R_DIR}
- EOF
- doenvd 99R
- newbashcomp "${WORKDIR}"/${BCP} ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/lib/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/NEWS.rds
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-3.3.0.ebuild b/dev-lang/R/R-3.3.0.ebuild
deleted file mode 100644
index c7a578a..00000000
--- a/dev-lang/R/R-3.3.0.ebuild
+++ /dev/null
@@ -1,203 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-BCP=${PN}-20130129.bash_completion
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
-
-pkg_setup() {
- if use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -i \
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -i \
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
- src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -i \
- -e 's:\.\./manual/:manual/:g' \
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -i \
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -i \
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4 eaclocal
- eautoconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${R_DIR}/lib
- R_HOME=${R_DIR}
- EOF
- doenvd 99R
- newbashcomp "${WORKDIR}"/${BCP} ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/lib/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2016-09-12 19:38 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2016-09-12 19:38 UTC (permalink / raw
To: gentoo-commits
commit: 49f4aa6a4b60cfd02acd8ac85aa239a38434d560
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 12 19:37:22 2016 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Mon Sep 12 19:37:22 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=49f4aa6a
dev-lang/R: 593420
dev-lang/R/R-3.3.1.ebuild | 8 +++-----
1 file changed, 3 insertions(+), 5 deletions(-)
diff --git a/dev-lang/R/R-3.3.1.ebuild b/dev-lang/R/R-3.3.1.ebuild
index c7a578a..ceeeaf9 100644
--- a/dev-lang/R/R-3.3.1.ebuild
+++ b/dev-lang/R/R-3.3.1.ebuild
@@ -50,8 +50,6 @@ RDEPEND="${CDEPEND}
RESTRICT="minimal? ( test )"
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
-
pkg_setup() {
if use openmp; then
if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
@@ -83,7 +81,7 @@ src_prepare() {
# fix Rscript path when installed (gentoo bug #221061)
sed -i \
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
+ -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \
src/unix/Makefile.in || die "sed unix Makefile failed"
# fix HTML links to manual (gentoo bug #273957)
@@ -173,8 +171,8 @@ src_install() {
fi
cat > 99R <<-EOF
- LDPATH=${R_DIR}/lib
- R_HOME=${R_DIR}
+ LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
EOF
doenvd 99R
newbashcomp "${WORKDIR}"/${BCP} ${PN}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2016-06-24 2:58 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2016-06-24 2:58 UTC (permalink / raw
To: gentoo-commits
commit: 8344d8b7fc5587c14d4446d9afdd9296ca44f82d
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 24 02:57:42 2016 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Fri Jun 24 02:57:42 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8344d8b7
dev-lang/R: bump to 3.3.1
dev-lang/R/Manifest | 1 +
dev-lang/R/R-3.3.1.ebuild | 203 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 204 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 46a4673..4ee64de 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -2,3 +2,4 @@ DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9
DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
DIST R-3.2.5.tar.gz 29876312 SHA256 60745672dce5ddc201806fa59f6d4e0ba6554d8ed78d0f9f0d79a629978f80b5 SHA512 aff7efa84188dfdd486d48095fadb9fbe1ab5897f9f924b9956d21d955d7cba9e50c1d21af6cca8327af8d1465b10761526a3a3be357c08a536831e7f5fc290b WHIRLPOOL 48b232bac4df9d562253fac3527c5786a6b45b3adeb5e91ad586549254ae1a2b53f0d39bc746cfd6d86094201f9d8e29617a9678780c7c58365f484f679fc7e0
DIST R-3.3.0.tar.gz 29820067 SHA256 9256b154b1a5993d844bee7b1955cd49c99ad72cef03cce3cd1bdca1310311e4 SHA512 81e9ef761bee4d9322ca785fbed843ab13c2f5b55be769d982a81a7e7694e03980cbc7ee067fc850bd7a17ab65d93be81f27db50d428665773174c690383d4cc WHIRLPOOL bbc694374c778d0bb6e8e6ed6b5ef7b2e5c3dca19507ce58f3a544019f9b4aaf55ebbd4759ac0b880c571ca66826bfd8e88f71d164fd07be13c2797930daab07
+DIST R-3.3.1.tar.gz 29848329 SHA256 3dc59ae5831f5380f83c169bac2103ad052efe0ecec4ffa74bde4d85a0fda9e2 SHA512 d0ff85e99b9ec9cac672aa30d7d1a854778c6a610bcc5336e8c60c8c74f20856f2bfeae085af793fad646ff45cb4677d9d6dcbaa18212591f72f00a02339f4cd WHIRLPOOL 6e2edb60173a54c8b25d16201c24176b3ea837287e6d306c9d2e2c4578764b0d469d9c17228b6be67dda646a4272f30b331dbbc6238a6e851eb5320f04c7f151
diff --git a/dev-lang/R/R-3.3.1.ebuild b/dev-lang/R/R-3.3.1.ebuild
new file mode 100644
index 0000000..c7a578a
--- /dev/null
+++ b/dev-lang/R/R-3.3.1.ebuild
@@ -0,0 +1,203 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
+
+BCP=${PN}-20130129.bash_completion
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-3/${P}.tar.gz
+ https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+CDEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ >=dev-libs/libpcre-8.35:3=
+ virtual/blas:0
+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+DEPEND="${CDEPEND}
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+
+RDEPEND="${CDEPEND}
+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
+
+pkg_setup() {
+ if use openmp; then
+ if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
+ ewarn "OpenMP is not available in your current selected gcc"
+ die "need openmp capable gcc"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
+ "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
+ "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -i \
+ -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -i \
+ -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
+ src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -i \
+ -e 's:\.\./manual/:manual/:g' \
+ $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -i \
+ -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -i \
+ -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
+ src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4 eaclocal
+ eautoconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${R_DIR}/lib
+ R_HOME=${R_DIR}
+ EOF
+ doenvd 99R
+ newbashcomp "${WORKDIR}"/${BCP} ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/lib/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2016-05-08 16:08 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2016-05-08 16:08 UTC (permalink / raw
To: gentoo-commits
commit: f3695a1babd2e020051752a94af11afee59a3b59
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Sun May 8 16:07:11 2016 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Sun May 8 16:08:05 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f3695a1b
dev-lang/R: bump to 3.3.0, fix bug #567488
dev-lang/R/Manifest | 3 +-
dev-lang/R/R-3.3.0.ebuild | 203 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 204 insertions(+), 2 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 78ef083..46a4673 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,5 +1,4 @@
DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc
DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
-DIST R-3.2.3.tar.gz 29816176 SHA256 b93b7d878138279234160f007cb9b7f81b8a72c012a15566e9ec5395cfd9b6c1 SHA512 9d7294af860204f4d84e25eb503111c9607beedbc42f01de073c915945a6342c3e24e25a9cc038a2e58442036bee931975d93dc327081ed02afe5ffa365170ea WHIRLPOOL 31ecbaa5c4340e02551eefe17f7f2e9ae075778e7b568a2c477b9f31f1b9598380edb8cb53c713df6643d2cba62ea97c6f225490ade2fc8a9e2b4d88426c7883
-DIST R-3.2.4.tar.gz 29879523 SHA256 bafd405fe9c2fe3bbe47a8a7730ad120f03b7df9fb0f61674fca19cf061dd350 SHA512 a74f01a9b47437feb81520c10936a6f2bc7700900730ec87b7f1442ee90bcf1d7aac9ef3345aa046c0566f1920f114da0a616c5f355b1e8480dc01e311476cbf WHIRLPOOL 0277c372baaf6c50c403c03b8fef04e80e8690efad875c26a03283a4f4d32e53610091695922a57a2f8bee4ac1a568b36f1fbf929bf61d11298b81907a3aaac6
DIST R-3.2.5.tar.gz 29876312 SHA256 60745672dce5ddc201806fa59f6d4e0ba6554d8ed78d0f9f0d79a629978f80b5 SHA512 aff7efa84188dfdd486d48095fadb9fbe1ab5897f9f924b9956d21d955d7cba9e50c1d21af6cca8327af8d1465b10761526a3a3be357c08a536831e7f5fc290b WHIRLPOOL 48b232bac4df9d562253fac3527c5786a6b45b3adeb5e91ad586549254ae1a2b53f0d39bc746cfd6d86094201f9d8e29617a9678780c7c58365f484f679fc7e0
+DIST R-3.3.0.tar.gz 29820067 SHA256 9256b154b1a5993d844bee7b1955cd49c99ad72cef03cce3cd1bdca1310311e4 SHA512 81e9ef761bee4d9322ca785fbed843ab13c2f5b55be769d982a81a7e7694e03980cbc7ee067fc850bd7a17ab65d93be81f27db50d428665773174c690383d4cc WHIRLPOOL bbc694374c778d0bb6e8e6ed6b5ef7b2e5c3dca19507ce58f3a544019f9b4aaf55ebbd4759ac0b880c571ca66826bfd8e88f71d164fd07be13c2797930daab07
diff --git a/dev-lang/R/R-3.3.0.ebuild b/dev-lang/R/R-3.3.0.ebuild
new file mode 100644
index 0000000..c7a578a
--- /dev/null
+++ b/dev-lang/R/R-3.3.0.ebuild
@@ -0,0 +1,203 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
+
+BCP=${PN}-20130129.bash_completion
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-3/${P}.tar.gz
+ https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+CDEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ >=dev-libs/libpcre-8.35:3=
+ virtual/blas:0
+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+DEPEND="${CDEPEND}
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+
+RDEPEND="${CDEPEND}
+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
+
+pkg_setup() {
+ if use openmp; then
+ if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
+ ewarn "OpenMP is not available in your current selected gcc"
+ die "need openmp capable gcc"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
+ "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
+ "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -i \
+ -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -i \
+ -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
+ src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -i \
+ -e 's:\.\./manual/:manual/:g' \
+ $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -i \
+ -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -i \
+ -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
+ src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4 eaclocal
+ eautoconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${R_DIR}/lib
+ R_HOME=${R_DIR}
+ EOF
+ doenvd 99R
+ newbashcomp "${WORKDIR}"/${BCP} ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/lib/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2016-05-08 15:03 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2016-05-08 15:03 UTC (permalink / raw
To: gentoo-commits
commit: f351d29f7b1a0b6b6de2f34f213e6d4ea28617a1
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Sun May 8 15:02:55 2016 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Sun May 8 15:02:55 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f351d29f
dev-lang/R: remove 3.2.3 and 3.2.4
dev-lang/R/R-3.2.3.ebuild | 206 ----------------------------------------------
dev-lang/R/R-3.2.4.ebuild | 206 ----------------------------------------------
2 files changed, 412 deletions(-)
diff --git a/dev-lang/R/R-3.2.3.ebuild b/dev-lang/R/R-3.2.3.ebuild
deleted file mode 100644
index c8227c9..0000000
--- a/dev-lang/R/R-3.2.3.ebuild
+++ /dev/null
@@ -1,206 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-BCP=${PN}-20130129.bash_completion
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
-
-pkg_setup() {
- if use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -i \
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -i \
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
- src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -i \
- -e 's:\.\./manual/:manual/:g' \
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -i \
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -i \
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4 eaclocal
- eautoconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-system-zlib \
- --with-system-bzlib \
- --with-system-pcre \
- --with-system-xz \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${R_DIR}/lib
- R_HOME=${R_DIR}
- EOF
- doenvd 99R
- newbashcomp "${WORKDIR}"/${BCP} ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/lib/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/NEWS.rds
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-3.2.4.ebuild b/dev-lang/R/R-3.2.4.ebuild
deleted file mode 100644
index c8227c9..0000000
--- a/dev-lang/R/R-3.2.4.ebuild
+++ /dev/null
@@ -1,206 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-BCP=${PN}-20130129.bash_completion
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
-
-pkg_setup() {
- if use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -i \
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -i \
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
- src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -i \
- -e 's:\.\./manual/:manual/:g' \
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -i \
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -i \
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4 eaclocal
- eautoconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-system-zlib \
- --with-system-bzlib \
- --with-system-pcre \
- --with-system-xz \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${R_DIR}/lib
- R_HOME=${R_DIR}
- EOF
- doenvd 99R
- newbashcomp "${WORKDIR}"/${BCP} ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/lib/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/NEWS.rds
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2016-04-20 18:05 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2016-04-20 18:05 UTC (permalink / raw
To: gentoo-commits
commit: c7a27b7b33e4111bf2c295f791fca67ae69706a5
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Wed Apr 20 17:37:11 2016 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Wed Apr 20 18:04:55 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c7a27b7b
dev-lang/R: bump to 3.2.5
dev-lang/R/Manifest | 1 +
dev-lang/R/R-3.2.5.ebuild | 206 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 207 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 47cf3ef..78ef083 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -2,3 +2,4 @@ DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9
DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
DIST R-3.2.3.tar.gz 29816176 SHA256 b93b7d878138279234160f007cb9b7f81b8a72c012a15566e9ec5395cfd9b6c1 SHA512 9d7294af860204f4d84e25eb503111c9607beedbc42f01de073c915945a6342c3e24e25a9cc038a2e58442036bee931975d93dc327081ed02afe5ffa365170ea WHIRLPOOL 31ecbaa5c4340e02551eefe17f7f2e9ae075778e7b568a2c477b9f31f1b9598380edb8cb53c713df6643d2cba62ea97c6f225490ade2fc8a9e2b4d88426c7883
DIST R-3.2.4.tar.gz 29879523 SHA256 bafd405fe9c2fe3bbe47a8a7730ad120f03b7df9fb0f61674fca19cf061dd350 SHA512 a74f01a9b47437feb81520c10936a6f2bc7700900730ec87b7f1442ee90bcf1d7aac9ef3345aa046c0566f1920f114da0a616c5f355b1e8480dc01e311476cbf WHIRLPOOL 0277c372baaf6c50c403c03b8fef04e80e8690efad875c26a03283a4f4d32e53610091695922a57a2f8bee4ac1a568b36f1fbf929bf61d11298b81907a3aaac6
+DIST R-3.2.5.tar.gz 29876312 SHA256 60745672dce5ddc201806fa59f6d4e0ba6554d8ed78d0f9f0d79a629978f80b5 SHA512 aff7efa84188dfdd486d48095fadb9fbe1ab5897f9f924b9956d21d955d7cba9e50c1d21af6cca8327af8d1465b10761526a3a3be357c08a536831e7f5fc290b WHIRLPOOL 48b232bac4df9d562253fac3527c5786a6b45b3adeb5e91ad586549254ae1a2b53f0d39bc746cfd6d86094201f9d8e29617a9678780c7c58365f484f679fc7e0
diff --git a/dev-lang/R/R-3.2.5.ebuild b/dev-lang/R/R-3.2.5.ebuild
new file mode 100644
index 0000000..c8227c9
--- /dev/null
+++ b/dev-lang/R/R-3.2.5.ebuild
@@ -0,0 +1,206 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
+
+BCP=${PN}-20130129.bash_completion
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-3/${P}.tar.gz
+ https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+CDEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ >=dev-libs/libpcre-8.35:3=
+ virtual/blas:0
+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+DEPEND="${CDEPEND}
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+
+RDEPEND="${CDEPEND}
+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
+
+pkg_setup() {
+ if use openmp; then
+ if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
+ ewarn "OpenMP is not available in your current selected gcc"
+ die "need openmp capable gcc"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
+ "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
+ "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -i \
+ -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -i \
+ -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
+ src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -i \
+ -e 's:\.\./manual/:manual/:g' \
+ $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -i \
+ -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -i \
+ -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
+ src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4 eaclocal
+ eautoconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-system-zlib \
+ --with-system-bzlib \
+ --with-system-pcre \
+ --with-system-xz \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${R_DIR}/lib
+ R_HOME=${R_DIR}
+ EOF
+ doenvd 99R
+ newbashcomp "${WORKDIR}"/${BCP} ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/lib/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/NEWS.rds
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2016-03-15 19:59 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2016-03-15 19:59 UTC (permalink / raw
To: gentoo-commits
commit: ca161a07ae9f4f5d49a908c9cbd5d9f12794b15e
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Tue Mar 15 19:58:30 2016 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Tue Mar 15 19:58:56 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ca161a07
dev-lang/R: bump to 3.2.4
dev-lang/R/Manifest | 1 +
dev-lang/R/R-3.2.4.ebuild | 206 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 207 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 95f848f..47cf3ef 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,4 @@
DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc
DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
DIST R-3.2.3.tar.gz 29816176 SHA256 b93b7d878138279234160f007cb9b7f81b8a72c012a15566e9ec5395cfd9b6c1 SHA512 9d7294af860204f4d84e25eb503111c9607beedbc42f01de073c915945a6342c3e24e25a9cc038a2e58442036bee931975d93dc327081ed02afe5ffa365170ea WHIRLPOOL 31ecbaa5c4340e02551eefe17f7f2e9ae075778e7b568a2c477b9f31f1b9598380edb8cb53c713df6643d2cba62ea97c6f225490ade2fc8a9e2b4d88426c7883
+DIST R-3.2.4.tar.gz 29879523 SHA256 bafd405fe9c2fe3bbe47a8a7730ad120f03b7df9fb0f61674fca19cf061dd350 SHA512 a74f01a9b47437feb81520c10936a6f2bc7700900730ec87b7f1442ee90bcf1d7aac9ef3345aa046c0566f1920f114da0a616c5f355b1e8480dc01e311476cbf WHIRLPOOL 0277c372baaf6c50c403c03b8fef04e80e8690efad875c26a03283a4f4d32e53610091695922a57a2f8bee4ac1a568b36f1fbf929bf61d11298b81907a3aaac6
diff --git a/dev-lang/R/R-3.2.4.ebuild b/dev-lang/R/R-3.2.4.ebuild
new file mode 100644
index 0000000..c8227c9
--- /dev/null
+++ b/dev-lang/R/R-3.2.4.ebuild
@@ -0,0 +1,206 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
+
+BCP=${PN}-20130129.bash_completion
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-3/${P}.tar.gz
+ https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+CDEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ >=dev-libs/libpcre-8.35:3=
+ virtual/blas:0
+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+DEPEND="${CDEPEND}
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+
+RDEPEND="${CDEPEND}
+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
+
+pkg_setup() {
+ if use openmp; then
+ if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
+ ewarn "OpenMP is not available in your current selected gcc"
+ die "need openmp capable gcc"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
+ "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
+ "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -i \
+ -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -i \
+ -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
+ src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -i \
+ -e 's:\.\./manual/:manual/:g' \
+ $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -i \
+ -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -i \
+ -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
+ src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4 eaclocal
+ eautoconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-system-zlib \
+ --with-system-bzlib \
+ --with-system-pcre \
+ --with-system-xz \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${R_DIR}/lib
+ R_HOME=${R_DIR}
+ EOF
+ doenvd 99R
+ newbashcomp "${WORKDIR}"/${BCP} ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/lib/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/NEWS.rds
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2016-01-04 18:24 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2016-01-04 18:24 UTC (permalink / raw
To: gentoo-commits
commit: 702ba2aaa8e9bff70c76a39c0e28c5934f63adcb
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 4 18:23:36 2016 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Mon Jan 4 18:24:41 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=702ba2aa
dev-lang/R: bump to 3.2.3
dev-lang/R/Manifest | 1 +
dev-lang/R/R-3.2.3.ebuild | 206 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 207 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index a60e55e..95f848f 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,2 +1,3 @@
DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc
DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
+DIST R-3.2.3.tar.gz 29816176 SHA256 b93b7d878138279234160f007cb9b7f81b8a72c012a15566e9ec5395cfd9b6c1 SHA512 9d7294af860204f4d84e25eb503111c9607beedbc42f01de073c915945a6342c3e24e25a9cc038a2e58442036bee931975d93dc327081ed02afe5ffa365170ea WHIRLPOOL 31ecbaa5c4340e02551eefe17f7f2e9ae075778e7b568a2c477b9f31f1b9598380edb8cb53c713df6643d2cba62ea97c6f225490ade2fc8a9e2b4d88426c7883
diff --git a/dev-lang/R/R-3.2.3.ebuild b/dev-lang/R/R-3.2.3.ebuild
new file mode 100644
index 0000000..c8227c9
--- /dev/null
+++ b/dev-lang/R/R-3.2.3.ebuild
@@ -0,0 +1,206 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
+
+BCP=${PN}-20130129.bash_completion
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-3/${P}.tar.gz
+ https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+CDEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ >=dev-libs/libpcre-8.35:3=
+ virtual/blas:0
+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+DEPEND="${CDEPEND}
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+
+RDEPEND="${CDEPEND}
+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
+
+pkg_setup() {
+ if use openmp; then
+ if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
+ ewarn "OpenMP is not available in your current selected gcc"
+ die "need openmp capable gcc"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
+ "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
+ "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -i \
+ -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -i \
+ -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
+ src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -i \
+ -e 's:\.\./manual/:manual/:g' \
+ $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -i \
+ -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -i \
+ -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
+ src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4 eaclocal
+ eautoconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-system-zlib \
+ --with-system-bzlib \
+ --with-system-pcre \
+ --with-system-xz \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${R_DIR}/lib
+ R_HOME=${R_DIR}
+ EOF
+ doenvd 99R
+ newbashcomp "${WORKDIR}"/${BCP} ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/lib/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/NEWS.rds
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2015-10-16 11:04 Mikle Kolyada
0 siblings, 0 replies; 103+ messages in thread
From: Mikle Kolyada @ 2015-10-16 11:04 UTC (permalink / raw
To: gentoo-commits
commit: 6e1c709df3180cf4ef59c151fd297df05697665e
Author: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
AuthorDate: Fri Oct 16 11:01:50 2015 +0000
Commit: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
CommitDate: Fri Oct 16 11:01:50 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6e1c709d
dev-lang/R: sparc stable wrt bug #556422
Package-Manager: portage-2.2.20.1
dev-lang/R/R-3.2.2.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-3.2.2.ebuild b/dev-lang/R/R-3.2.2.ebuild
index 2aba25e..9ad8572 100644
--- a/dev-lang/R/R-3.2.2.ebuild
+++ b/dev-lang/R/R-3.2.2.ebuild
@@ -15,7 +15,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 hppa ia64 ~ppc ppc64 ~sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 hppa ia64 ~ppc ppc64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2015-09-27 7:27 Jeroen Roovers
0 siblings, 0 replies; 103+ messages in thread
From: Jeroen Roovers @ 2015-09-27 7:27 UTC (permalink / raw
To: gentoo-commits
commit: f1012b3339465e4d9b047422516f1d3b481ff622
Author: Jeroen Roovers <jer <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 27 07:27:44 2015 +0000
Commit: Jeroen Roovers <jer <AT> gentoo <DOT> org>
CommitDate: Sun Sep 27 07:27:44 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f1012b33
dev-lang/R: Stable for HPPA PPC64 (bug #556422).
Package-Manager: portage-2.2.20.1
RepoMan-Options: --ignore-arches
dev-lang/R/R-3.2.2.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-3.2.2.ebuild b/dev-lang/R/R-3.2.2.ebuild
index b38b37b..2aba25e 100644
--- a/dev-lang/R/R-3.2.2.ebuild
+++ b/dev-lang/R/R-3.2.2.ebuild
@@ -15,7 +15,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~hppa ia64 ~ppc ~ppc64 ~sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 hppa ia64 ~ppc ppc64 ~sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2015-09-26 17:22 Mikle Kolyada
0 siblings, 0 replies; 103+ messages in thread
From: Mikle Kolyada @ 2015-09-26 17:22 UTC (permalink / raw
To: gentoo-commits
commit: 1a42d38f3f3897412d67da5f03de417317e363b5
Author: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
AuthorDate: Sat Sep 26 17:17:08 2015 +0000
Commit: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
CommitDate: Sat Sep 26 17:17:08 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1a42d38f
dev-lang/R: ia64 stable wrt bug #556422
Package-Manager: portage-2.2.20.1
dev-lang/R/R-3.2.2.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-3.2.2.ebuild b/dev-lang/R/R-3.2.2.ebuild
index c3aa035..b38b37b 100644
--- a/dev-lang/R/R-3.2.2.ebuild
+++ b/dev-lang/R/R-3.2.2.ebuild
@@ -15,7 +15,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 ~hppa ia64 ~ppc ~ppc64 ~sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2015-09-25 14:13 Agostino Sarubbo
0 siblings, 0 replies; 103+ messages in thread
From: Agostino Sarubbo @ 2015-09-25 14:13 UTC (permalink / raw
To: gentoo-commits
commit: a4d52b76258c134fa6a3e99b5804457e878c82a0
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Fri Sep 25 14:12:10 2015 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Fri Sep 25 14:12:10 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a4d52b76
dev-lang/R: x86 stable wrt bug #556422
Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="x86"
dev-lang/R/R-3.2.2.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-3.2.2.ebuild b/dev-lang/R/R-3.2.2.ebuild
index 9a460e7..c3aa035 100644
--- a/dev-lang/R/R-3.2.2.ebuild
+++ b/dev-lang/R/R-3.2.2.ebuild
@@ -15,7 +15,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2015-09-24 14:00 Agostino Sarubbo
0 siblings, 0 replies; 103+ messages in thread
From: Agostino Sarubbo @ 2015-09-24 14:00 UTC (permalink / raw
To: gentoo-commits
commit: b47f304859a7678a002ec17141f702cab521e7f6
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 24 14:00:46 2015 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Thu Sep 24 14:00:46 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b47f3048
dev-lang/R: amd64 stable wrt bug #556422
Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="amd64"
dev-lang/R/R-3.2.2.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-lang/R/R-3.2.2.ebuild b/dev-lang/R/R-3.2.2.ebuild
index a0087cb..9a460e7 100644
--- a/dev-lang/R/R-3.2.2.ebuild
+++ b/dev-lang/R/R-3.2.2.ebuild
@@ -15,7 +15,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
^ permalink raw reply related [flat|nested] 103+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
@ 2015-08-20 14:31 Denis Dupeyron
0 siblings, 0 replies; 103+ messages in thread
From: Denis Dupeyron @ 2015-08-20 14:31 UTC (permalink / raw
To: gentoo-commits
commit: 62c5566932d9ac00b42ed1c3aef4a1a032f9c34a
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Thu Aug 20 14:30:40 2015 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Thu Aug 20 14:30:40 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=62c55669
dev-lang/R: bump to 3.2.2
Gentoo-Bug: 557600
Package-Manager: portage-2.2.20.1
dev-lang/R/Manifest | 1 +
dev-lang/R/R-3.2.2.ebuild | 206 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 207 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index d6134ee..be5008e 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -5,3 +5,4 @@ DIST R-3.1.0.tar.gz 28469975 SHA256 8a680390f84c58c01dcdefd682eaa0e90389f09e6d2f
DIST R-3.1.1.tar.gz 28606569 SHA256 ce5c4d5e34414ce8f1ec2d5642861435fa1ddc4cd89bd336172bbe25a62c7a19 SHA512 a75d8b82645bd9486873669b802924448d591013076e3d7dc958502dc6f0dac7d7fb78f3921d34a1eac1383f141b6e800f4293f7fac09651e0176cf84c431af9 WHIRLPOOL ec05c70193a229cbaf15f3432853070c6666c3963a4e2719a6d8ff188bfc2cada0d1f2fe90a9dd6b43f46913138afed0be387ba73b7f9c4d87abc362cc8a5393
DIST R-3.1.2.tar.gz 28655941 SHA256 bcd150afcae0e02f6efb5f35a6ab72432be82e849ec52ce0bb89d8c342a8fa7a SHA512 fee20cd94d14bd46cc36fb265ed4d64f44eaa3929dd13c62d29a5883fde607aba63e28a4b0f265ede63f78788996deaee36acf6a70cc0bc90a705c9782be01a1 WHIRLPOOL f02d543c0fd7e89e63aba844b7c0f651a9a6bb5dbfcd58bdb64b49d08335c3270383eb62291b9f2f20ef6ec9f39eef5cf77ae1af3109296f8b1898227cca99d1
DIST R-3.2.0.tar.gz 29124927 SHA256 f5ae953f18ba6f3d55b46556bbbf73441350f9fd22625402b723a2b81ff64f35 SHA512 c6041c854251d51dd936d3a3632c2958a0437c58488f93e5ba810e957fb7f2276e3fe4f615fb4705f2fc5a66aa50a828b54b5e4e7b4358c7fd465c71531b9828 WHIRLPOOL e21a65b9197a202691dbe903b441caf7d8b92efdffb86dcccdbf09d080177cfd472a54d381df1cca749937434ffb9c08ac74198457e320353207cd00837e1086
+DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
diff --git a/dev-lang/R/R-3.2.2.ebuild b/dev-lang/R/R-3.2.2.ebuild
new file mode 100644
index 0000000..12ad83e
--- /dev/null
+++ b/dev-lang/R/R-3.2.2.ebuild
@@ -0,0 +1,206 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
+
+BCP=${PN}-20130129.bash_completion
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-3/${P}.tar.gz
+ http://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+CDEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ >=dev-libs/libpcre-8.35:3=
+ virtual/blas:0
+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+DEPEND="${CDEPEND}
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+
+RDEPEND="${CDEPEND}
+ ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) )
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
+
+pkg_setup() {
+ if use openmp; then
+ if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
+ ewarn "OpenMP is not available in your current selected gcc"
+ die "need openmp capable gcc"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
+ "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
+ "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -i \
+ -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -i \
+ -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
+ src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -i \
+ -e 's:\.\./manual/:manual/:g' \
+ $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -i \
+ -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -i \
+ -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
+ src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4 eaclocal
+ eautoconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-system-zlib \
+ --with-system-bzlib \
+ --with-system-pcre \
+ --with-system-xz \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${R_DIR}/lib
+ R_HOME=${R_DIR}
+ EOF
+ doenvd 99R
+ newbashcomp "${WORKDIR}"/${BCP} ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/lib/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/NEWS.rds
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
^ permalink raw reply related [flat|nested] 103+ messages in thread
end of thread, other threads:[~2024-11-14 9:53 UTC | newest]
Thread overview: 103+ messages (download: mbox.gz follow: Atom feed
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